TCONS_00047531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047531
Unique NameTCONS_00047531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047531 ID=TCONS_00047531|Name=TCONS_00047531|organism=Clytia hemisphaerica|type=transcript|length=402bp
ttaatcATTTTATAGTGTTGTGTCAATTTGATTGATCGATATTCGTTGAC
TACTATCGGAAGTGTCTATCCTTTTGGGACAATAGGTTGAAACTTTATAA
TAAGGGATAAGAAGACAAGTTTGACTGGCAGGTTCACTGCTCCAATTTGC
AGCCAAATGTTTTGTGACTAAATgctaaacaggttttttggaaataCTTG
ATAAGTCAAATTATTTTCGCCATATAGGAGTTGACGTAGAAAAGGGCTTC
ACAAAATGACTTAGTCATCCAGTATCTTAAATGGAATCACAACCTAACTG
TAATGGTATGGAgtactttgaaattttagtgCTGTCCTTTCGAGACAAAT
ACTTGCAGAATTTGTATTAAATGCTTGTGGCTCCTGAGTAGCTCAACAAT
GA
Run BLAST on NCBI

transcript from alignment at scaffold_131:69011..69412-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047531 ID=TCONS_00047531|Name=TCONS_00047531|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at scaffold_131:69011..69412- (Clytia hemisphaerica)
TTAATCATTTTATAGTGTTGTGTCAATTTGATTGATCGATATTCGTTGAC
TACTATCGGAAGTGTCTATCCTTTTGGGACAATAGGTTGAAACTTTATAA
TAAGGGATAAGAAGACAAGTTTGACTGGCAGGTTCACTGCTCCAATTTGC
AGCCAAATGTTTTGTGACTAAATGCTAAACAGGTTTTTTGGAAATACTTG
ATAAGTCAAATTATTTTCGCCATATAGGAGTTGACGTAGAAAAGGGCTTC
ACAAAATGACTTAGTCATCCAGTATCTTAAATGGAATCACAACCTAACTG
TAATGGTATGGAGTACTTTGAAATTTTAGTGCTGTCCTTTCGAGACAAAT
ACTTGCAGAATTTGTATTAAATGCTTGTGGCTCCTGAGTAGCTCAACAAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030276XLOC_030276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047531-exon-scaffold_131-1575043694:69011..69412TCONS_00047531-exon-scaffold_131-1575043694:69011..69412Clytia hemisphaericaexon
TCONS_00047531-exon-scaffold_131-1510915933:69011..69412TCONS_00047531-exon-scaffold_131-1510915933:69011..69412Clytia hemisphaericaexon
TCONS_00047531-exon-scaffold_131-1491911889:69011..69412TCONS_00047531-exon-scaffold_131-1491911889:69011..69412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:69011..69412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94244	2.52928	0.68034	2.79839	0.967468	0	1.47656	3.12077	2.69248	2.58489	4.22763	2.95253	3.9488	1.28288	0.257317	1.24679	0	0.686677	0.804183	1.22606	0.447346	2.37633e-08	0	0.0323872	2.48597	3.93471	0	0.594381	0.534678	0.849112
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top