TCONS_00047489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047489
Unique NameTCONS_00047489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047489 ID=TCONS_00047489|Name=TCONS_00047489|organism=Clytia hemisphaerica|type=transcript|length=1438bp
caaaatggcggctGCAGCAGGGGTCACGAGGAAATTGCCCCTGAATGGCA
TCAAGGTTTTGGAGCTTGCCGGGCTTGCCCCTGTACCATTTACAGGAATG
ATCCTTGCAGATTTTGGAGCTAAAGTATGCCGAGTTAATCGAACCAATGA
GAATTTTACTTTGGACTCTCTTTCTCGTGGAAAACAATCAATTTGTTTGG
acttaaaatcttcaaaaggacagaatgtttttaaaagattggCATCTTCA
TCTGATGTTATTATCGAGCCTTTCAGACCAGGCATCATGGAAAAGCTTGG
ACTTGGACCAAATACATTACTGGAATCAAATGAGAGGCTTATCTATACAC
GTTTAAATGGGTATGGTACAAAACCAACACCTCTTTCACAGAAAGCTGGA
CACGATATCAACTATTTAGCAATGACAGGTGTCTTGTCCATGTTGGGTca
gaaagGTAACAAACCTGAGCCACCGATCAATTTGCTTGGTGATTTTGCTG
GAGGAAGTATGATGGCTGTTATGGGAATAATGATGGCTTTGTTTGAAAGA
AGTGTTTCAGGAAAAGGCCAGGTTGTCGATGCGTCAATTACAGCGGGCGC
GTCTTACGTATCATCTTTTCTACACCGATCACGTGACATTGGTATTTGGT
TGGGTGAGCGAGGCACGAACGTCTTGGACGGAGGGGCTCCTTTTTATCAA
GTGTACCAAACGAAAGATGGAAAATATATGACAGTTGGGGCGATCGAACC
ACAATTTTATCAAGAACTTTTAAAAGGTCTTGATGCAGAGGATGATGAAA
CGTTATCTGTTCAAATGAACGTATTAGAGTGGCCTAAAATGAAAACCAAA
ATGGAAGACATTTTTGCTTCGAAGACGCAAGAAGAATGGTGCCAAGTCTT
TGAAGACAAAGATGCTTGCGTCACACCGGTGCTAGATTTTCTTGACGCTC
ACGAACACGCCCACAACAAGGCAGCTGGTTCGTTTATGTATAATCAAGAG
CACGGGCGTTATGAACCAACGCCCGCCCCTGAACTTTCTCGAACGCCCGC
GCGTGAGGAAATTTTGCCGGAACCGAATATAGGAGAACATACTGTCGAAT
ATTtgagaaatgagaattttacgAAAGCCGAGATTAACAAGTTATTAGAT
GAGGGTATTATCGAACAGTTTACACCAAAGGCATCTTTGTAATGGTCTCA
ACGAACGCTTTTCAAGAATTGTTGCTGAGACTTCATCACTAAGTATGCTG
GAGCAATTTGGGATACAATATTATGTTTTTAGCATTCTCTTTCgattgtt
atttttgattttgatttaattGTGCCGTCTCTAGAAGACTGGTGACttct
taaccctttccggacgcatgatttcacggctatatgacgcaaacaaaaat
tcgatttttgactGACTTTAcgaaaattgcaatagaaa
Run BLAST on NCBI

transcript from alignment at scaffold_13:106065..116782-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047489 ID=TCONS_00047489|Name=TCONS_00047489|organism=Clytia hemisphaerica|type=transcript|length=10718bp|location=Sequence derived from alignment at scaffold_13:106065..116782- (Clytia hemisphaerica)
CAAAATGGCGGCTGCAGCAGGGGTCACGAGGAAATTGCCCCTGAATGGCA
TCAAGGTTTTGGAGCTTGCCGGGCTTGCCCCTGTACCATTTACAGGAATG
ATCCTTGCAGATTTTGGAGCTAAAGTATGCCGAGTTAATCGAACCAATGA
GAATTTTACTTTGGACTCTCTTTCTCGTGGAAAACAATCAATTTGTTTGG
ACTTAAAATCTTCAAAAGGACAGAATGTTTTTAAAAGATTGGCATCTTCA
TCTGATGTTATTATCGAGCCTTTCAGACCAGGCATCATGGAAAAGCTTGG
ACTTGGACCAAATACATTACTGGAATCAAATGAGAGGCTTATCTATACAC
GTTTAAATGGTAAGAACTTCAATAAGTTGTTTGGAGAACGCGACAGCCTA
TTGAATAAGTTTGAATAAGGGGTCACTCACATATCGATTCTTCCCACGAC
TAACGTCAAATTGACGCGAAGGGGTGGGTGGGTTAGAGTCTTTGACGCTA
AGAAATTTCCCCAGAAATATCGATTTTTAATACGTTTATTCCGTGACAAA
TGTTACTTTCCACATTTCTTTTCCTATTTTTACATACCTAAATATTCGTT
CGCTTGCTATTTTACAAAAATTTTAACCGAAACAAACGGCCCGATGTTTA
CGTCTCGAGTTTCTTTGTTCAGACGGTCTGCACGGCCCTTGAATTTCGCC
GACGGTCGGTCTATTTTTTGTGAAATGCGGCTTTTCTGTTGATTTTGATT
ATGGAGATAATTAATTCCGGCAACTTTCTGAAAAAAGTTTGGAAATTATC
TCCATTATTTTTTAAATGTAAACTGCGTGAGCAAGCCGTAGCGAATTTAA
AGATGGCTGACGAAACAACGATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATAATGACAC
GTCTAATGTAAAACAGGCTTTAAGATAGATCTTCGTGTGAAGCAAGCCTT
CTAATTTTCGTGACTTCGTGATTCTTTTACACTGAACCATAACAAACAAA
ATGGCGGCTGCAGCAGGGGTCACGAGGAAATTGCCCCTGAATGGCATCAA
GGTTTTGGAGCTTGCCGGGCTTGCCCCTGTACCATTTACAGGAATGATCC
TTGCAGATTTTGGAGCTAAAGTATGCCGAGTTAATCGAACCAATGAGAAT
TTTACTTTGGACTCTCTTTCTCGTGGAAAACAATCAATTTGTTTGGACTT
AAAATCTTCAAAAGGACAGAATGTTTTTAAAAGATTGGCATCTTCATCTG
ATGTTATTATCGAGCCTTTCAGACCAGGCATCATGGAAAAGCTTGGACTT
GGACCAAATACATTACTGGAATCAAATGAGAGGCTTATCTATACACGTTT
AAATGGTAGGAACTAAGTTGTTTGGAGAACGCGACACAGCCTATTGAATA
AGTTTGAATAACAAAGAAATTACTCCAAATAAATTACTTTCCCTCAGCCA
ATATAAAAATGTGATAAATTATTTTGTCTCTAGGCAGTTAGTCACACTAC
TAGCATCCCGCCAAGATGTGTATCAAAGATTAATGCTGCGAAAGCACTTT
ATCGTTTACTTCACTAGCAACCAAACAAAAGTTGTTATATAATTCTGTAT
AATTGTTCGACCTGGAGAAAAGTCAGTTTAAAAAAAAAAGCTTTCGAACT
GCTTTTTCAAATTTAATGTACCATTAGTTGGTCTAATATCGACATCCCTC
GTCCAATTCTGACACCCTTCTTTAGAGACAGGAATAATATGAAAGCTTGA
ATCACTGATTGAAAAAGGATTAATCCTCTGTGACCACTAAGCAAAGACAA
ACAGTTTCAACTTTTCTATCAATTTCAGCTGTTAAAAAGGGTGCCGGAAT
TAAAGGAGGGATGTCAACATTAGACCAAGTTACGGCACGGTACGATAGCT
CAAAATTCAAGTTAGGCGGCGGTCGAAAAATTGTTCTGTTCGCGTCGCAA
CAGGTGTTAAAAATGCATGCGGGCGGACGGCTGGTCGGAAAAATTCCCGT
TTTTTTTTAAATTGCTTCTGTAAGTCAGGGGCAGGTGGTGACACAAACAG
AACAATTTTCTGATGGTGGCCAGAGCGATCAAGAAAAAAGCTATACGTCA
AAAGAACAATTTGCCAGAAAATCAGGGGAAAATATGATGCGGGCGGGTGA
TGCGAATAGAACAATTTTTCGATGGCCGCCTTAGATCATCCTCTATACGA
TTAATAAAGAATGAACAAAAAATTTAAATCTTGAAGCTCACAATATTTCG
ACAAACCTGTAAACTTTTTTTTGGATGCACTCGGTACCGTCAACTGCTCT
AACTTGGGTTGATTGGTCAAAACATGGGACTGGTTGATATCTGGTCTGTA
TTTTCACTAACTCTTAAATCTCTTTGACGACAAATTTGTTTTCGTTTGAC
CAATTTAAGATATATTACATATTTTTACCAAAAAGTTGTTATCCCCCTTT
TTTTTATTTAATACCCCCTAAAAACTCAAAAGAAAATCTCTTATCCCCCC
TATGAACCCTTTCTTGAGAAGTTGGATCCCCTTAAAGAAGGGGGGGTTCA
CACTTATGGCTAAATAAAAAACTAAATCCTGGAATATCGAAGTTCCAGCC
GCACTGTTCTGCTAGCTTTCTCAGCTCAATCCTCAACCCGCGCAAAACTT
AGCAGCAGCAGATCATTCCAATGGAAGTTGTTAGAATGTTAGTTAACACC
AGCAGAGTAAACGCATGTTTGGACTATGTACCCTATGCTGCACAAAGCAC
TTAATCTAAAGTCCCCCAAAGCATGGCTTGGCAGCAGGTTTTAGGTGCCC
CCTAAGAATTCAGGTGACCCCTAAGATTTAGGTAACCCCTGGTTGCCAAA
TATTTTAGGTGCCCCCTAAGAATTCAGGTGACCCCTAAGATTTAGGTAAC
CCCTGGTTGCCAAATATTTTAGGTGACCCCTAAGTCAACACAGATTGCTT
GAAAATGCACTCAAAACATGCACTTATAAGACAATTATGACAAATTAAAA
AAGAAAAAACTTTGCATTTTGCAAAATAACCATTTTCGAAAAAATTATTG
GGGGCATAGCCCCCCTTGCCTCCCCCCCAGTTGCTACGGCACTGCAGATA
ATATATTAGATACCAAATTGTCAGTTTTTGAGCATTGCTTAGATTAAAAT
ATAAGATGAGAAAGTGCCAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TTTGCAAAAGTTCTAGGAATGAAAATAAAGGGATAATGATAATTGAATAC
TATCCACTGATGATCCGCGGCACTATTGTAAAGCTAGAATCGCTTTGCGA
GCGTACTCATCGCTTGAGAAAATGATTGACAGATTAAATTTTTTCACCCC
CGCGGGTGTTCTGCGAGCGTTCTCAGCTCAATCCTTGGACCGCGCTAAAA
TGGTAGACTTTGACAGGTCATTTCGATGGAAGTTTTTTGAATGTTTACAA
GGCTCTTGACAGAAAATCCTTTGTTTTATTGTCAATGATGACAGTGCTGT
TATTAATTTTGTTAAATCTGACACATTGATGTTTGTAAGTGCACTTTGTA
GTTTTGATTGAAGAATCATATTCTGGTTTTCATGTTATTATTAGATGCTG
TTTTAGAGCTTTAGAGCTAGGCTGACCGGACGGTCGTAATCGATCGATTA
GTCAACGATGGGTATCGATGAGCAAGCGATTAATTTTGATTACCTTGTGG
TTCGACTATTATCAATTATTCATCGATTGTCTATCGATGAGTTATCGATT
GTTTGTTATCAATGAGCTATCGATCAATATCGATTACCTTAAAGCATCGA
TCTTATCGATCTTATCGATTTTACATTGATTATTATCGATTAGATTTTAA
AAAAGTAGACTTTTTCGATTCTTCCTTTTTGAACTTTTCTTGTTGATAGG
GACTTTTAATTTTATCGTATCGATGAATAGCAGAATGATGAATTAGAGAG
CATCAACTCAGTAACGTGGCCTGGCTCGACCTGCGTGGTTTTCACACAAA
CGCAATAATGAAAAATTTACCGCCAGATTTAGAAAAAATTATCACTCGAA
AAGAAAGAAATGGTGCACTAAGGCTTCACTTTTTCTTGCCGGAGCAAAAT
TGTCTATAATTAGCCCGCCATGCGATTTTTCTAACACTTTGCTGGTCTAT
TACTTCGTAATTGTATATTACGAAGTGACGTCAATCTTCCGACACGAAAT
CATGAGGGTAGGGATATAACGTTACTTACTCCAACAGGGCAAATTCAGGA
AAGTTAATGCTCGCGAAAATTTCTTAATCTTAAAAATCTATAAATCAATA
AATCAAATATATTTCAAGTTAAAAATTTTCCAAACATTAATAATAGTTTC
ATGCTGCTTACAGCAACAATCGTCAGATGTGAATGAAAATCAAAAACATA
CTCTTTCTTATCTACAGAAATTAAAAATTTAAAAAAATAGATTTAAGTGT
TAAAAAGTGATAAAATGATGCGTGCCTATTAAAAATAATTATCGAGTGTG
TTAAAAAAACAAAAGGAGTAAAATACTATTATTTGTCCGGTGGGACCTCT
TTAGAATCTGTAAAACTCCAAAATGGTAGTCGAAATCGCCAATCTCGGAG
TGTTAAAGAGTCTCTCTCTCTCAAAGGAAAACATCAGTTGGGAAAATTGC
ATGCATTTCAATATAAGAAACGCCGAATCTAAGATCATCGCAGCACCTTC
CGGGAATTGCGGTATGGACGAAATACTTTAGGCGTACAAATTTTCGCGAG
CAGAAACTTTCGCGAGGTCGAACAATTTCGTCATTGGGTTTGTTGCTTGA
GTCATTATGTAATGGTTTCCCTACTAATTTTTCGAGTCAAAATGGTACTG
ATCAGGAGAGGTAAATTGAAGATTTTATAAAAATCAGCTGTCATAAAAGT
ATTAAATAACGAGAATCTCATTTCTTTAAAGTATTGAAATAAAATTTTAA
AGAATTCGATAAAACCAATTTTTTTATGAAATGAAAACCGCCCCAAAAGT
ACTTTAACAAACAAAATTTTTCATTTCTTCATAATAGGGTATGGTACAAA
ACCAACACCTCTTTCACAGAAAGCTGGACACGATATCAACTATTTAGCAA
TGACAGGTGTCTTGTCCATGTTGGGTCAGAAAGGTTTGTTTTTGAAAAAT
TTTCACTTTTTTGATTTATATGCCCCAGTAAATCAGTCTTGAAACCTGAA
ATCTTTCTTATATTCCATCAACTATCTCTATCATTTAAGGCTTGGGGACA
CGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCCATCTCACCAA
CCTGAAGCGCTTTCTCGTGTCTAGTCGACAAAACTTTTAATAACATTTAT
GTGTTTCTCACTTTTGTCCCATGGACAAAATCAGCGTGTCTTTTGGGTAT
TTCCCTCACTTTTTGTCCCATAAAACCATAAAAGAAACCATGAGACATGC
ACTGTTTTCTTGTGTTGGTGAGATGGAGCATGTTGCATTGCGCCAATGCG
AAAAAAACTTCTTGTGTGCCCAAGCCTTTACTCTCGCGGAACTTTCATTT
CAAAGTTGGAAGGTTTGTTACAGTTGTTCCTATGACACACCTGATAAAGA
TTTATCATGGTTGGTGATAAGGGACGGGCTATAAAATCAATTTGTTTCTT
GATCTGATGGTTAAAACAGACTTCTGTGTTCCTATTTGGATTCTTTTAAA
ATTTGTAGCGAAAACTACTGTGATCCGCACGGCTTTAATTAACCTTTTTC
ATGGTTCTATTAATTCCATGCAATTTCTGTATTGCCTAATAAATCAATAA
GCTTTTTGGATACTTATAGCCTTATCGGCGACGTTCTTAAATACAAATGC
TAGAAAAAGCCAATNATTTCTCACTTTTGTCCCATGGACAAAATCAGCGT
GTCTTTTGGGTATTTCCCTCACTTTTTGTCCAATAAAACCATAAAAGAAA
CCATGAGACATGCACTGTTTTCTTGTGTTGGTGAGATGGAGCATGTTGCA
TTGCACCAATGCGAAAAAAACTTCTTGTGTGCCCAAGCCTTTACTCTCGC
GGAACTTTCATTTCAAAGTTGGAAGGTTTGTTACAGTTGTTCCGATGACA
CACCTGATAAAGATTTATCATGGTTGGTGATAAGGGACGGGCTATAAAAT
CAATTTGTTTCTTGATCTGATGGTTAAAACAGACTTCTGTGTTCCTATTT
GGATTCTTTTAAAATTTGTAGCGAAAACTACTGTGATCCGCACGGCTTTA
ATTAACCTTTTTCATGGTTCTATTAATTCCATGCAATTTCTGTATTGCCT
AATAAATCAATAAGCTTTTTGGATACTTATAGCCTTATCGGCGACGTTCT
TAAATACAAATGCTAGAAAAAGCCAATTTTATATTTTATTTATATCATGA
TATTTTTAGGTAACAAACCTGAGCCACCGATCAATTTGCTTGGTGATTTT
GCTGGAGGAAGTATGATGGCTGTTATGGGAATAATGATGGCTTTGTTTGA
AAGAAGTGTTTCAGGAAAAGGCCAGGTTGTCGATGCGTCAATTGTAAGTA
CCTTGATTGATTTTTCGACCTACCTTGGAGGTCCTTTAAATTAACCTTTC
TTCGTTCGTTCGTTCGTTCATCCGTCCTTTTGTTCGTCTGATGTGAACTT
TTCTCAGGATTGGCTTATTAGCTTTTCTGTTTTTTTTCATCATGATGTAA
AATGGTAATGTCGAAAATGTGAAAGAGCCCGATTTTCGAAAAAAGATTCC
CCTCCGGGAAAACCGGTTTTTAAGCATTTTCTCGAGATTTTATCATTAGT
TTTTTCTGAGTTTTTTCACTTTTCAATGAAATCTTGGTAGCCGGAACTTT
CTAAGAACCGCAACAGTCGAGAATCGCCGGAAAAATGGTTTTTCTTTAAT
TTCTCGAGTTGTATTTGTTGAGTTGGCATTTTCTTACTTTTGCTCCCATT
TTTTCTATTTTTTTATTACATCAGCCTTCAGGTAGGTCCATTCAACATGA
AACTTGTTCTAATTGATCTTAAAATTTATTCATGATAAGTATGGACCCCT
CTTAACCTCTCTATAATAACATTTGTAGAAACAAATCTTTAGGAATTTAC
TCTAACCCAATTACTGTATTACTTCAAATAAACGCCCCTCCTAAAAATCA
AAAAAATTGATAAACACCCGAGCGTTTATTCGAATTAATACGGTACACTG
ACATGATTTCCATTTTAAAGCCTTAAGAGACCCTAAGTACAGTGGAGTCT
CTTCAACTTGAACGTCTATGACGTCTCGAATGTCCCCTTAACTCGAAGTT
TTATTGACGGCCCTATCAGACGGCCTTATAAACCTCACTCCAAACTCCAA
ACATCGAACAAATTTGTGTTCCCCTTGTGTGTTCGAGTTATGGAGACTCA
ACTCGGATTGATTCTCCCAGATGAATTTGTAAGATTTATTAGCGTATAGC
TTCCTTTATCTGGAGAGAATTTTATTTTTCCACTTTATTACTGTGCAATT
ATTGCGAACGTAGCCTTCGTGAAGAGCATTTTTATTTATCTCAATGAGAC
TGTTCATCTAACATTTCCAGACCATCTAAAAAGAACGACAAATAACTATA
AAAAAGCGACAAAAAGAACGACAAATATTTAAAGAAAGACAAATTTCATA
TTTCGCCGTCCACAACCCCGACCGAAATTGACTGTACCACAGATTCATTC
CTCTTTCTTTATCACGGGAATTAACTGCATGTGGTTTAAAAGAACGGCAA
ATTACGCTTGCGTGTAGTTCTCTATTTGGGTGAACTGGAAACATTACATG
AACTAACTCCAATAACACCTTTTTGTAGACAGCGGGCGCGTCTTACGTAT
CATCTTTTCTACACCGATCACGTGACATTGGTATTTGGTTGGGTGAGCGA
GGCACGAACGTCTTGGACGGAGGGGCTCCTTTTTATCAAGTGTACCAAAC
GAAAGATGGAAAATATATGACAGTTGGGGCGATCGAACCACAATTTTATC
AAGAACTTTTAAAAGGTTTGTTAAATGTTTTTTGTATGTATGCGTGTTTT
TTATAAGCATTGCATTTATAAGCATATCAAGGCTCAAATAGGACAAAATT
TAAAACATATGCTTCATTACCCTTACCTTTATTTAGCTTGTCTTTTCAGG
ATTTTCGGAATTTCCCTAAAATTTAGCTTAGGATATAAACATCCTTCAGG
CATTTTTCAGCCTTTCCAACCTCTCGATCTAAGCATGCTTACGTGAGATT
ATAAAAAAAAATCATAATTATGATTTCTTTTTTTCAATTCTTAACTGCAC
TTTTCCTATAAAGTAAAAAAAATAAAAAAACATCTCTAGAAGGAAAAATA
TATATATATTAGAGCTATGTAGGAAGATAATCAAACTAAAATAAGGCACC
ACTAAACCGTTCAGAGTCAAGAATAAATTCAATGACAAGATTAAACATGA
CAAAAAGGAATCGATTTTATCCGTCAATATCTTTATTTTCTTATTACATT
TGGTAGGTCTTGATGCAGAGGATGATGAAACGTTATCTGTTCAAATGAAC
GTATTAGAGTGGCCTAAAATGAAAACCAAAATGGAAGACATTTTTGCTTC
GAAGACGCAAGAAGAATGGTGCCAAGTCTTTGAAGACAAAGATGCTTGCG
TCACACCGGTGCTAGATTTTCTTGACGCTCACGAACACGCCCACAACAAG
GCAGCTGGTTCGTTTATGTATAATCAAGAGCACGGGCGTTATGAACCAAC
GCCCGCCCCTGAACTTTCTCGAACGCCCGCGCGTGAGGAAATTTTGCCGG
AACCGAATATAGGAGAACATACTGTCGAATATTTGAGAAATGAGAATTTT
ACGAAAGCCGAGATTAACAAGTTATTAGATGAGGGTATTATCGAACAGTT
TACACCAAAGGCATCTTTGTAATGGTCTCAACGAACGCTTTTCAAGAATT
GTTGCTGAGACTTCATCACTAAGTATGCTGGAGCAATTTGGGATACAATA
TTATGTTTTTAGCATTCTCTTTCGATTGTTATTTTTGATTTTGATTTAAT
TGTGCCGTCTCTAGAAGACTGGTGACTTCTTAACCCTTTCCGGACGCATG
ATTTCACGGCTATATGACGCAAACAAAAATTCGATTTTTGACTGACTTTA
CGAAAATTGCAATAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030247XLOC_030247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047489-exon-scaffold_13-1575043694:116424..116782TCONS_00047489-exon-scaffold_13-1575043694:116424..116782Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1575043694:110100..110195TCONS_00047489-exon-scaffold_13-1575043694:110100..110195Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1575043694:108690..108823TCONS_00047489-exon-scaffold_13-1575043694:108690..108823Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1575043694:107218..107404TCONS_00047489-exon-scaffold_13-1575043694:107218..107404Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1575043694:106065..106726TCONS_00047489-exon-scaffold_13-1575043694:106065..106726Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1510915933:116424..116782TCONS_00047489-exon-scaffold_13-1510915933:116424..116782Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1510915933:110100..110195TCONS_00047489-exon-scaffold_13-1510915933:110100..110195Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1510915933:108690..108823TCONS_00047489-exon-scaffold_13-1510915933:108690..108823Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1510915933:107218..107404TCONS_00047489-exon-scaffold_13-1510915933:107218..107404Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1510915933:106065..106726TCONS_00047489-exon-scaffold_13-1510915933:106065..106726Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1491911889:116424..116782TCONS_00047489-exon-scaffold_13-1491911889:116424..116782Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1491911889:110100..110195TCONS_00047489-exon-scaffold_13-1491911889:110100..110195Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1491911889:108690..108823TCONS_00047489-exon-scaffold_13-1491911889:108690..108823Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1491911889:107218..107404TCONS_00047489-exon-scaffold_13-1491911889:107218..107404Clytia hemisphaericaexon
TCONS_00047489-exon-scaffold_13-1491911889:106065..106726TCONS_00047489-exon-scaffold_13-1491911889:106065..106726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:106065..116782 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0022301	5.94358	12.7171	14.0124	15.8741	12.951	14.3629	7.38818	17.8403	16.7603	16.1063	4.06272	13.7075	0.00563506	20.3935	23.2091	20.4067	4.62599	0.0132279	8.85803	5.73265	8.32981	0.0189693	6.18102	0.0203266	0.0210644	0.00157547	8.16915	17.7118	0.0535933
Blast
[Close]
BLAST of TCONS_00047489 vs. Swiss-Prot (Human)
Match: AMACR (Alpha-methylacyl-CoA racemase OS=Homo sapiens GN=AMACR PE=1 SV=2)

HSP 1 Score: 410.223 bits (1053), Expect = 1.771e-139
Identity = 201/385 (52.21%), Postives = 265/385 (68.83%), Query Frame = 2 
Query:   35 LPLNGIKVLELAGLAPVPFTGMILADFGAKVCRVNRTNENFTLDSLSRGKQSICLDLKSSKGQNVFKRLASSSDVIIEPFRPGIMEKLGLGPNTLLESNERLIYTRLNGYGTKPTPLSQKAGHDINYLAMTGVLSMLGQKGNKPEPPINLLGDFAGGSMMAVMGIMMALFERSVSGKGQVVDASITAGASYVSSFLHRSRDIGIWLGERGTNVLDGGAPFYQVYQTKDGKYMTVGAIEPQFYQELLKGLDAEDDETLSVQMNVLEWPKMKTKMEDIFASKTQEEWCQVFEDKDACVTPVLDFLDAHEHAHNKAAGSFMYNQEHGRYEPTPAPELSRTPAREEILPEPNIGEHTVEYLRNENFTKAEINKLLDEGIIEQFTPKASL 1189
            + L GI V+EL+GLAP PF  M+LADFGA+V RV+R    + +  L RGK+S+ LDLK  +G  V +RL   SDV++EPFR G+MEKL LGP  L   N RLIY RL+G+G   +   + AGHDINYLA++GVLS +G+ G  P  P+NLL DFAGG +M  +GI+MALF+R+ +GKGQV+DA++  G +Y+SSFL +++ + +W   RG N+LDGGAPFY  Y+T DG++M VGAIEPQFY+ L+KGL  + DE L  QM++ +WP+MK K  D+FA KT+ EWCQ+F+  DACVTPVL F +   H HNK  GSF+ ++E     P PAP L  TPA      +P IGEHT E L    F++ EI +L  + IIE    KASL
Sbjct:    1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGS-FCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQFYELLIKGLGLKSDE-LPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTFEEVVHHDHNKERGSFITSEEQD-VSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEIYQLNSDKIIESNKVKASL 382
The following BLAST results are available for this feature:
BLAST of TCONS_00047489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMACR1.771e-13952.21Alpha-methylacyl-CoA racemase OS=Homo sapiens GN=A... [more]
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