|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047484 ID=TCONS_00047484|Name=TCONS_00047484|organism=Clytia hemisphaerica|type=transcript|length=2224bp
TCCTCTTAGTCTCATGGAACCTGAACCAAATGGAGAACAATAATCACCGA
ATGTTGTTTCAAacaattccaaaaatgaattcCTGAAAAACCTTGCGAAA
CATCCAATACACCCATATCGATTGCGCAATACTCATCCACGGTAAATTCA
ACATGAAAGCGaggcaaaaaaaacaacaaataaaaaGATCCCTCACCAAC
GGCTTTGAAGATGACCAAATTGATTATTTTTCATCACAAAAAAAACGCCA
GAAATCGAACCAATCTTCAAACTAAAACAACAACGTTAACCCACACTACA
AAATACCAACCAAGAAAACGAACAAACAGACTCTCCACGGTCAATTTATA
AGGCCTCCtcactgaaaaatgctcttaatcatgtaaaggctattgtgatt
gccaattttaaaataaagatttgataggtcgatttttaacgatttcgagc
actttctgaaagtaactttttcattttttaattgagcataacttttgatc
taatgaatcaaatttaatatgtgacccatcaaaatttaagtttatctttc
ctcTTTTCAGTAAAAtgggaatggttcttttaaaatttttagatttcgaa
aaaattagtttcaaagagagaaacttttttgtggcgcaccagGTACTTCT
TCTACGTCAGCTTTTGGACGTCAGTCTTTGTCGCTTAAAGTTTCCAGAAA
CATTCAAAACCAACGTCGTCTTTTTTCGACTTTCATTAAATGACTCCGCA
CCCATTGAGTCATCCACAACACCCACTGTGCCacccacaacaacaacaaa
aaaagaaaagaaaatgaattaaCCACCTTTCCTTTCTGCCACTATACTGA
TGAGACGTTCAGCTACcaaactgaaaaaatactattttaaaAACTATAGA
GATCCTCTTAGTCTCATGGAACCTGAACCAAATGGAGAACAATAATCACC
GAATGTTGTTTCAAacaattccaaaaatgaattcCTGAAAAACCTTGCGA
AACATCCAATACACCCATATCGATTGCGCAATACTCATCCACGGTAAATT
CAACATGAAAGCGaggcaaaaaaaacaacaaataaaaaGATCCCTCACCA
ACGGCTTTGAAGATGACCAAATTGATTATTTTTCATCACAAAAAAAACGC
CAGAAATCGAACCAATCTTCAAACTAAAACAACAACGTTAACCCACACTA
CAAAATACCAACCAAGAAAACGAACAAACAGACTCTCCACGGTCAATTTA
TAAGGCCTCCtcactgaaaaatgctcttaatcatgtaaaggctattgtga
ttgccaattttaaaataaagatttgataggtcgatttttaacgatttcga
gcactttctgaaagtaactttttcattttttaattgagcataacttttga
tctaatgaatcaaatttaatatgtgacccatcaaaatttaagtttatctt
tcctcTTTTCAGTAAAAtgggaatggttcttttaaaatttttagatttcg
aaaaaattagtttcaaagagagaaacttttttgtggcgcaccagGTACTT
CTTCTACGTCAGCTTTTGGACGTCAGTCTTTGTCGCTTAAAGTTTCCAGA
AACATTCAAAACCAACGTCGTCTTTtgtctccagtggtgcatatcatgaa
tacaccgATATCGATTGCGCAATACTCATCCATGGTAAATTCAACATGAA
AGCGaggcaaaaaaaacaacaaataaaagATCTCTCACCAACGGCTTTGA
AAatgaccaatttgattagttttCATCACAAAAAAACGCCAGAAATCGAA
CCAATCTTCAAACTAAAACAACAACGTTAATCCACACTACAAAATACCAA
TCAAGAAAACGAACAAACAGACTCTCCACGGTCAATTTATAAGATGTAGG
TACAAAAGACGATTTTTTAATCAATGACCATTTTGTAAGAATTGAAAATT
AGTATTTTCCACAACACTAACGTATATATGCAATTGAATTCAGAAGGCTT
CAGGTATCCCATCCCTTTTCTACAGTTTTCTAGTGTCATGTCTTCCGTGG
ACAATATCTTGAAAGCAGAAATCAACTCTCCATCCTTCTATGAAGAGGAA
GTCAGAACTGACTTATATTCTTCAGATTTTGAAATCAATTCCATTCTTAC
ATTACTATCCTATTCTAGCAATCTTATGCCTATTTCAGTGATTTGAGTTT
TGCGTTCTCTTTTGCTATTTTAAG Run BLAST on NCBI transcript from alignment at scaffold_13:183782..186005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047484 ID=TCONS_00047484|Name=TCONS_00047484|organism=Clytia hemisphaerica|type=transcript|length=2224bp|location=Sequence derived from alignment at scaffold_13:183782..186005+ (Clytia hemisphaerica)
TCCTCTTAGTCTCATGGAACCTGAACCAAATGGAGAACAATAATCACCGA
ATGTTGTTTCAAacaattccaaaaatgaattcCTGAAAAACCTTGCGAAA
CATCCAATACACCCATATCGATTGCGCAATACTCATCCACGGTAAATTCA
ACATGAAAGCGaggcaaaaaaaacaacaaataaaaaGATCCCTCACCAAC
GGCTTTGAAGATGACCAAATTGATTATTTTTCATCACAAAAAAAACGCCA
GAAATCGAACCAATCTTCAAACTAAAACAACAACGTTAACCCACACTACA
AAATACCAACCAAGAAAACGAACAAACAGACTCTCCACGGTCAATTTATA
AGGCCTCCtcactgaaaaatgctcttaatcatgtaaaggctattgtgatt
gccaattttaaaataaagatttgataggtcgatttttaacgatttcgagc
actttctgaaagtaactttttcattttttaattgagcataacttttgatc
taatgaatcaaatttaatatgtgacccatcaaaatttaagtttatctttc
ctcTTTTCAGTAAAAtgggaatggttcttttaaaatttttagatttcgaa
aaaattagtttcaaagagagaaacttttttgtggcgcaccagGTACTTCT
TCTACGTCAGCTTTTGGACGTCAGTCTTTGTCGCTTAAAGTTTCCAGAAA
CATTCAAAACCAACGTCGTCTTTTTTCGACTTTCATTAAATGACTCCGCA
CCCATTGAGTCATCCACAACACCCACTGTGCCacccacaacaacaacaaa
aaaagaaaagaaaatgaattaaCCACCTTTCCTTTCTGCCACTATACTGA
TGAGACGTTCAGCTACcaaactgaaaaaatactattttaaaAACTATAGA
GATCCTCTTAGTCTCATGGAACCTGAACCAAATGGAGAACAATAATCACC
GAATGTTGTTTCAAacaattccaaaaatgaattcCTGAAAAACCTTGCGA
AACATCCAATACACCCATATCGATTGCGCAATACTCATCCACGGTAAATT
CAACATGAAAGCGaggcaaaaaaaacaacaaataaaaaGATCCCTCACCA
ACGGCTTTGAAGATGACCAAATTGATTATTTTTCATCACAAAAAAAACGC
CAGAAATCGAACCAATCTTCAAACTAAAACAACAACGTTAACCCACACTA
CAAAATACCAACCAAGAAAACGAACAAACAGACTCTCCACGGTCAATTTA
TAAGGCCTCCtcactgaaaaatgctcttaatcatgtaaaggctattgtga
ttgccaattttaaaataaagatttgataggtcgatttttaacgatttcga
gcactttctgaaagtaactttttcattttttaattgagcataacttttga
tctaatgaatcaaatttaatatgtgacccatcaaaatttaagtttatctt
tcctcTTTTCAGTAAAAtgggaatggttcttttaaaatttttagatttcg
aaaaaattagtttcaaagagagaaacttttttgtggcgcaccagGTACTT
CTTCTACGTCAGCTTTTGGACGTCAGTCTTTGTCGCTTAAAGTTTCCAGA
AACATTCAAAACCAACGTCGTCTTTtgtctccagtggtgcatatcatgaa
tacaccgATATCGATTGCGCAATACTCATCCATGGTAAATTCAACATGAA
AGCGaggcaaaaaaaacaacaaataaaagATCTCTCACCAACGGCTTTGA
AAatgaccaatttgattagttttCATCACAAAAAAACGCCAGAAATCGAA
CCAATCTTCAAACTAAAACAACAACGTTAATCCACACTACAAAATACCAA
TCAAGAAAACGAACAAACAGACTCTCCACGGTCAATTTATAAGATGTAGG
TACAAAAGACGATTTTTTAATCAATGACCATTTTGTAAGAATTGAAAATT
AGTATTTTCCACAACACTAACGTATATATGCAATTGAATTCAGAAGGCTT
CAGGTATCCCATCCCTTTTCTACAGTTTTCTAGTGTCATGTCTTCCGTGG
ACAATATCTTGAAAGCAGAAATCAACTCTCCATCCTTCTATGAAGAGGAA
GTCAGAACTGACTTATATTCTTCAGATTTTGAAATCAATTCCATTCTTAC
ATTACTATCCTATTCTAGCAATCTTATGCCTATTTCAGTGATTTGAGTTT
TGCGTTCTCTTTTGCTATTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047484-exon-scaffold_13-1491911889:183782..186005 | TCONS_00047484-exon-scaffold_13-1491911889:183782..186005 | Clytia hemisphaerica | exon |
| TCONS_00047484-exon-scaffold_13-1510915933:183782..186005 | TCONS_00047484-exon-scaffold_13-1510915933:183782..186005 | Clytia hemisphaerica | exon |
| TCONS_00047484-exon-scaffold_13-1575043694:183782..186005 | TCONS_00047484-exon-scaffold_13-1575043694:183782..186005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:183782..186005 + |
Blast
The following BLAST results are available for this feature:
|
