TCONS_00047480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047480
Unique NameTCONS_00047480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047480 ID=TCONS_00047480|Name=TCONS_00047480|organism=Clytia hemisphaerica|type=transcript|length=2149bp
AAAtatatcatttttatttttttagtaaaataacaaaattttcgaGGAAA
TCCAAAGAAGGCAAAGAAAAGATACAATTTTACAAACACACAAACAGACA
TATACAAAACTGAAAAATGGATTTGACAATATGTTACATGGTTACCATGG
CCACCATTTTGGTCTCGATCATTGATGCACAAAAAGGAAACTACTCTCGT
GGACTAAGCGGAGAATTTAGattaaagaaatttctaatGGATGAATACAA
CCCTGAAGTGAGACCAGTCGTCAATGATCGAGATATTGTTAATCTGACTT
TCGAAATTGCTTTGCAACAAATTGTTGAAGTGAACGAAAAAGAAGAATCA
CTATCAATCAGTGTGTTCTTTCGACAATATTGGCATGATCCAAACCTCAT
GTGGGATCCTTTAGATTACGGCAACGTCACATCAACGAATTTCAACCCTG
AGATGTTATGGAAACCGGATGTTGCTCTGTATAATAATGTGGAAAAAGAC
GTTGAATTTGGAGGTCAATTAGATTTATTAAAAAATCGTATCATTGTATA
TCACGATGGTAATGTCGTGTGGTATTCACTTGGTATCTTAAATGGGAAAT
GCCCTATGAACATCCGGTATTTCCCTTTCGACACGCAGATttgtgatttc
aaatttggaccatgGACTTATCATGGGCATTTAGTGGATATATATCCGAA
ACGTCAAGTTGTAGACACAGCGGCTTATACAATCCATTCGGAGTGGCATT
TGAAGAGCGCCGAACATATACGTAACGTTGCGTATTACGGTTGTTGCGTA
GAGCCGTACCCTGACGTCACCGTTAAAATTGTTTTGGAGAGAAGGCCGTT
ATTTTAcgtattgaatctattgttacCAATGATTTTGATCGGCGTTTTAA
CGTTATTGGCGTTTTATTTACCGGCACAATCAGGAGAACGTGTTTCATTT
GCTGTCACGCTACTATTGGCTATGACGGTTTTTATGTTGATCGTGGCTGA
CATGGTTCCCGCCAGCTCTGAAACCATACCTCTGCTAGGGATTTTTTTCA
CAGCTGTTATGGTGGAAATGGTTCTAATGGTTTTCTCAATGTGTTACGTT
TTAAAGCTACATCTTATACAGCCGGATGACGGGGAAGAAATAGGGCCGTT
CATGCGACGTTTTGTATACGATTTCCTATCATACAAATTTGGAACACGTA
AACGGAGGACGGATTTCGCTCGCGATGAATACAAATTTCATTTACAAGAT
TCAAAAACATGGGACAAAAATGGTAGCactaaaagtcataatggcGGTCA
TAGTTATGGTCAAGTGATTAATAATGGTCAAGATGACGGCAGCCGAAATA
TCGGAGCCGGTGATGTTGATGATTCATCGACGGCAGCCCTTATGGAGAAA
AATTTAAGAGTTATGACTGATAAGATgaaggaagaagaaaatgagAAACG
CATTAAGCAGGAATTTGAGATCTGTGCAACGACATTGGATATTCTAGCAC
TTATTTGTTTTGTGGCGCTCTTCATTTTGATAACAACGGTATATTTTGTG
GCAACTACTTGAAAGAAAATGATGCTGAGAGGCGCGAtggattttatata
ttttcgaTTTCGGAACGAGTTGAGTTTAGATCAGTATTAACCTACAAAAG
CAAATGTAAAACGAAAATGATGTTCGAAGCCTTCAAATCATGAGAAACTC
GTAATCAACAACAATAATATTCCAAAAGGAAAATTAATGAGAATTAACGA
GAATTATGCTGAATGTACAAGGTATCTCTGACTAGATATATCCCCCGAAA
GGAGCAAGTTataagttgtataaaatttagatgtattttttattaagaaa
tcgattttttagaaaaaacctttttttttcgaatgaTCTTGTAAAAGGAA
CAGTGTTATAGTCTTTAGTTATGACATATTGTTAACGTATTCTGATAATT
AGTAGCAGAAGGTCTAATAAGCTTATCAAAGAGTAAGAGTTAACAGCTCG
TCAATTTTAAAATACCTATAAAATCAAGTGCGGCGGAAAGGGTTGGTTAT
TTCACCTTCCCAAGTCTCTGAAGGttaaaaaacaagttcaaaTAGTCTTT
CAAAGAGTCGGAATTTCCCCTATTTCGCACTTTTAAGGGCTACGAGAac
Run BLAST on NCBI

protein sequence of TCONS_00047480-protein

>TCONS_00047480-protein ID=TCONS_00047480-protein|Name=TCONS_00047480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
MDLTICYMVTMATILVSIIDAQKGNYSRGLSGEFRLKKFLMDEYNPEVRP
VVNDRDIVNLTFEIALQQIVEVNEKEESLSISVFFRQYWHDPNLMWDPLD
YGNVTSTNFNPEMLWKPDVALYNNVEKDVEFGGQLDLLKNRIIVYHDGNV
VWYSLGILNGKCPMNIRYFPFDTQICDFKFGPWTYHGHLVDIYPKRQVVD
TAAYTIHSEWHLKSAEHIRNVAYYGCCVEPYPDVTVKIVLERRPLFYVLN
LLLPMILIGVLTLLAFYLPAQSGERVSFAVTLLLAMTVFMLIVADMVPAS
SETIPLLGIFFTAVMVEMVLMVFSMCYVLKLHLIQPDDGEEIGPFMRRFV
YDFLSYKFGTRKRRTDFARDEYKFHLQDSKTWDKNGSTKSHNGGHSYGQV
INNGQDDGSRNIGAGDVDDSSTAALMEKNLRVMTDKMKEEENEKRIKQEF
EICATTLDILALICFVALFILITTVYFVATT
Run BLAST on NCBI

transcript from alignment at scaffold_13:97888..103037+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047480 ID=TCONS_00047480|Name=TCONS_00047480|organism=Clytia hemisphaerica|type=transcript|length=5150bp|location=Sequence derived from alignment at scaffold_13:97888..103037+ (Clytia hemisphaerica)
AAAtatatcatttttatttttttagtaaaataacaaaattttcgaGGAAA
TCCAAAGAAGGCAAAGAAAAGATACAATTTTACAAACACACAAACAGACA
TATACAAAACTGAAAAATGGATTTGACAATATGTTACATGGTTACCATGG
CCACCATTTTGGTCTCGATCATTGATGCACAAAAAGGTAGCAAAAGAGTT
TTCTTAAATCTAGATCTAGTTCCCCCATCATTATTTTAGGTcactttttg
ccaaaatttattgTAACAATTTCCAATTTATTAACTCACTTGactaaaaa
gttctatttcTACCAAATCTTATCTtaatataattttctttttattaatg
AGCCCTTTTGAAATTGAGCCATATTAATTGATATTTAGCCGAAACTTTCT
TGCTAGAAAAAAGGCCACTCTAGAGTACATTACAGGCACAGATTCtctca
tttatttttctaatttgaaaatctcctttttgttaaatttgaaaaaCCTC
TGGAATTTAGGTCCGCCTTGTCTATTGGAAAAGCTGgccatcccttgttt
atttTGAACCTTGGTCTAGAGAAAAtccaatctcgtacccagagccccTT
GCACCACTTTTAGATTTCACTGATGGTCGTGatataatacacccctgtct
cacagtcccggtgTGAAACTTTTcccacagcggggataaaattttccatt
taaatcccaatggggataaaaattctattgttcctaagTCGAAAAATACA
GttggaatggttttggagtgtaattttttacaatgaattttgaatgaagG
GTGAAATTGGGGAAATTGGGGGAAATTGTAGgcatttttcccaccgggga
cgaaattttggccaaattttccagtggggctgtgacacaggggtgttata
atTTCTCTTGGAATTACTGTCGCAAGTTTGACGAGTATTATCAGAATTCT
TTAGAAAGTTAACTAAGGTTTGGAGAATCTTGAGAAAACACACATCTATC
ATCCATACTTTCATCTCATAGGAAACTACTCTCGTGGACTAAGCGGAGAA
TTTAGattaaagaaatttctaatGGATGAATACAACCCTGAAGTGAGACC
AGTCGTCAATGATCGAGATATTGTTAATCTGACTTTCGAAATTGCTTTGC
AACAAATTGTTGAAGTGGTGAgtaaacttttcaaattcaaatcatcaaga
aaaatttcttgttgaTAAACCCGAAGCACTATACTTGCTTAAGGACCTGT
CAGGGTTCAGAAAAATAGACTTTAAAAGGGACTACTTCAGTCATACTTAA
TATCGAAAAAAACCGCCCGTAAGATGTATACTAACTTGACATATTCAGTT
ATTGCGTAATAGTGTGTAATAAGAAACTTGAGAGCTTGTGACTAGTTTGA
TAGTAGATAGTATGTGACAAACAGGCTTTCTATCACACACTATCACACGT
TAGCACACAGTGGAAACCGACCTCACAAAAAGTCGACTTTACTCACCTAT
ATCTCTCGTAGAACGAAAAAGAAGAATCACTATCAATCAGTGTGTTCTTT
CGACAATATTGGCATGATCCAAACCTCATGTGGGATCCTTTAGATTACGG
CAACGTCACATCAACGAATTTCAACCCTGAGATGTTATGGAAACCGGATG
TTGCTCTGTATAATAAGTAAGTGTCCGAAAATTACCTAATTGTCCGGAAT
TGAATCGTTTTGGATTTTTGCTTTGATACAAATTTTGGCAAACTGATTta
cattttgtaaattttgtagttCAAACTTCCTTGTAGACAAATTCCAAAGA
CTttttgaggtttgaaaaatttgaagtaaTTTGTCCCCATAATCGTATTC
AAAGTCATTTGTCGcaaatttcgcaaaaaaatcAATGTAAGAATTCCACG
TAGGGTTGATTTATCGAGCCTCAGTGCCTCACTCGTGTCGATCGGAGAGG
GTACTGAACTTGGAACTACCACTTCTTTCTTTATCTTTCGTTagcttaaa
tcaaatttgaaCTTTTCTTAAAACTCGAAAGTAACTGACGATCTCTCACT
GTTTTCTTTAGTGTGGAAAAAGACGTTGAATTTGGAGGTCAATTAGATTT
ATTAAAAAATCGTATCATTGTATATCACGATGGTAATGTCGTGTGGTATT
CACTTGGTATCTTAAATGGGAAATGCCCTATGAACATCCGGTATTTCCCT
TTCGACACGCAGATttgtgatttcaaatttggaccatgGACTTATCATGG
GCATTTAGTGGATATATATCCGAAACGTCAAGTTGTAGACACAGGTATTT
AAGAATTTCTATCAACATTTTCCTCAAGCATAatgcttataagcatatcc
agACTGAGATTTgggcttgaaaacaatagatctactgttataaaaaaaat
tctcaaatgaACCCTTTGCTTTATGACAAAAACGCACAGTTACAATACGA
ATCGAATACATCTGTAATCTTTACGCAAAACTATTTCCAAAATTAGCAAG
TAGCAAATTGATATTAATgtaggataagaacaatttaagacaTTTTGTAC
TAGCCAATAAACCTTTGTTAAGGCTCGGctggtcttatttttttaacact
cATCTTAAGTGCAAAATCACCACCTAATTTTAACAACTTTGACCCTCTTG
CTTAAGATTCGGGTATCTCaagtttgttcttttttggcGTTTTTGAGCCT
TATTGTTCTTATGATATTGTTCtaatagaaaaagtgtattgtcTTTTCAA
ATTGTCTTTACAGCGGCTTATACAATCCATTCGGAGTGGCATTTGAAGAG
CGCCGAACATATACGTAACGTTGCGTATTACGGTTGTTGCGTAGAGCCGT
ACCCTGACGTCACCGTTAAAATTGTTTTGGAGAGAAGGCCGTTATTTTAc
gtattgaatctattgttacCAATGATTTTGATCGGCGTTTTAACGTTATT
GGCGTTTTATTTACCGGCACAATCAGGTAGAgtgaaattcatgatattca
tgatgtacaCCCCCTTCTagacccggtagaattttttcagccagtggggt
aaAATTAACGGAcaaaaactcaatggggattattgatattctcatatttC
TTATGGCTGaggatttaaattccattgttttcaagccagaaaattcagaa
gggatagaaaaatagcacaatattttgcagtgaggatttgtttatcaGGT
TATTTTCAACAGGACAAAAAATAAAGCATAATTTCTAATTAAGGACGATA
TTTAGGCCAAATTTTTcattgggtctgtgagaagggggtgttgtaCGAAA
CAAGGAACTCAGTAAAAATATATAGTTATTTTTATCAAAGTACagaaaaa
catgtttaaaaagCCTTCTTTANTCAGtaaaaagagttatttttattAAA
GTACAGAAAACATGTTTAAAAAGCCTTCTTTAAACAATAACGTGGCTACT
AGCTAACATCCGGAGCTTTTTGGATGTTTCAGTATAAAATATTAGATATT
GTTGCGATTGTTTGTTTGAATCAATAAGATTATGACCCAACAAACGGCCC
aacaaaatataacaaaatgttttgaaaggCAATGTTGGATGATTAATATA
AGAACCGAAAACAGGGCAGGACAGATATTGTTTTTAATACTTTTCaatca
ggcaaaaataaaaaattgtagtagccctgaatactaatgtatcaactact
aacgagcaaaacttgatatttaggcgggaatatctaaccaaacgacgttt
gatagcttgaacggtcaacttgattttctttatgatgaaccatatagatg
aacccatagtctgcggccgggtcagaaaatgttcttttttcacCCTGCCG
TTTtctggaaacactacatttatttatttttgcctcATATAGAAATTACT
AAATAATTAATaaccttttttttacaaatttcagGAGAACGTGTTTCATT
TGCTGTCACGCTACTATTGGCTATGACGGTTTTTATGTTGATCGTGGCTG
ACATGGTTCCCGCCAGCTCTGAAACCATACCTCTGCTAGGGATTTTTTTC
ACAGCTGTTATGGTGGAAATGGTTCTAATGGTTTTCTCAATGTGTTACGT
TTTAAAGCTACATCTTATACAGCCGGATGACGGGGAAGAAATAGGGCCGT
TCATGCGACGTTTTGTATACGATTTCCTATCATACAAATTTGGAACACGT
AAACGGAGGACGGATTTCGCTCGCGATGAATACAAATTTCATTTACAAGA
TTCAAAAACATGGGACAAAAATGGTAGCactaaaagtcataatggcGGTC
ATAGTTATGGTCAAGTGATTAATAATGGTCAAGATGACGGCAGCCGAAAT
ATCGGAGCCGGTGATGTTGATGATTCATCGACGGCAGCCCTTATGGAGAA
AAATTTAAGAGTTATGACTGATAAGATgaaggaagaagaaaatgagAAAC
GCATTAAGCAGGAATTTGAGATCTGTGCAACGACATTGGATATTCTAGCA
CTTATTTGTTTTGTGGCGCTCTTCATTTTGATAACAACGGTATATTTTGT
GGCAACTACTTGAAAGAAAATGATGCTGAGAGGCGCGAtggattttatat
attttcgaTTTCGGAACGAGTTGAGTTTAGATCAGTATTAACCTACAAAA
GCAAATGTAAAACGAAAATGATGTTCGAAGCCTTCAAATCATGAGAAACT
CGTAATCAACAACAATAATATTCCAAAAGGAAAATTAATGAGAATTAACG
AGAATTATGCTGAATGTACAAGGTATCTCTGACTAGATATATCCCCCGAA
AGGAGCAAGTTataagttgtataaaatttagatgtattttttattaagaa
atcgattttttagaaaaaacctttttttttcgaatgaTCTTGTAAAAGGA
ACAGTGTTATAGTCTTTAGTTATGACATATTGTTAACGTATTCTGATAAT
TAGTAGCAGAAGGTCTAATAAGCTTATCAAAGAGTAAGAGTTAACAGCTC
GTCAATTTTAAAATACCTATAAAATCAAGTGCGGCGGAAAGGGTTGGTTA
TTTCACCTTCCCAAGTCTCTGAAGGttaaaaaacaagttcaaaTAGTCTT
TCAAAGAGTCGGAATTTCCCCTATTTCGCACTTTTAAGGGCTACGAGAac

Coding sequence (CDS) from alignment at scaffold_13:97888..103037+

>TCONS_00047480 ID=TCONS_00047480|Name=TCONS_00047480|organism=Clytia hemisphaerica|type=CDS|length=8676bp|location=Sequence derived from alignment at scaffold_13:97888..103037+ (Clytia hemisphaerica)
ATGGATTTGACAATATGTTACATGGTTACCATGGCCACCATTTTGGTCTC
GATCATTGATGCACAAAAAGGAAACTACTCTCGTGGACTAAGCGGAGAAT
TTAGattaaagaaatttctaatGGATGAATACAACCCTGAAGTGAGACCA
GTCGTCAATGATCGAGATATTGTTAATCTGACTTTCGAAATTGCTTTGCA
ACAAATTGTTGAAGTGAACGAAAAAGAAGAATCACTATCAATCAGTGTGT
TCTTTCGACAATATTGGCATGATCCAAACCTCATGTGGGATCCTTTAGAT
TACGGCAACGTCACATCAACGAATTTCAACCCTGAGATGTTATGGAAACC
GGATGTTGCTCTGTATAATAATGTGGAAAAAGACGTTGAATTTGGAGGTC
AATTAGATTTATTAAAAAATCGTATCATTGTATATCACGATGGTAATGTC
GTGTGGTATTCACTTGGTATCTTAAATGGGAAATGCCCTATGAACATCCG
GTATTTCCCTTTCGACACGCAGATttgtgatttcaaatttggaccatgGA
CTTATCATGGGCATTTAGTGGATATATATCCGAAACGTCAAGTTGTAGAC
ACAGCGGCTTATACAATCCATTCGGAGTGGCATTTGAAGAGCGCCGAACA
TATACGTAACGTTGCGTATTACGGTTGTTGCGTAGAGCCGTACCCTGACG
TCACCGTTAAAATTGTTTTGGAGAGAAGGCCGTTATTTTAcgtattgaat
ctattgttacCAATGATTTTGATCGGCGTTTTAACGTTATTGGCGTTTTA
TTTACCGGCACAATCAGGAGAACGTGTTTCATTTGCTGTCACGCTACTAT
TGGCTATGACGGTTTTTATGTTGATCGTGGCTGACATGGTTCCCGCCAGC
TCTGAAACCATACCTCTGCTAGGGATTTTTTTCACAGCTGTTATGGTGGA
AATGGTTCTAATGGTTTTCTCAATGTGTTACGTTTTAAAGCTACATCTTA
TACAGCCGGATGACGGGGAAGAAATAGGGCCGTTCATGCGACGTTTTGTA
TACGATTTCCTATCATACAAATTTGGAACACGTAAACGGAGGACGGATTT
CGCTCGCGATGAATACAAATTTCATTTACAAGATTCAAAAACATGGGACA
AAAATGGTAGCactaaaagtcataatggcGGTCATAGTTATGGTCAAGTG
ATTAATAATGGTCAAGATGACGGCAGCCGAAATATCGGAGCCGGTGATGT
TGATGATTCATCGACGGCAGCCCTTATGGAGAAAAATTTAAGAGTTATGA
CTGATAAGATgaaggaagaagaaaatgagAAACGCATTAAGCAGGAATTT
GAGATCTGTGCAACGACATTGGATATTCTAGCACTTATTTGTTTTGTGGC
GCTCTTCATTTTGATAACAACGGTATATTTTGTGGCAACTACTTGAATGG
ATTTGACAATATGTTACATGGTTACCATGGCCACCATTTTGGTCTCGATC
ATTGATGCACAAAAAGGAAACTACTCTCGTGGACTAAGCGGAGAATTTAG
attaaagaaatttctaatGGATGAATACAACCCTGAAGTGAGACCAGTCG
TCAATGATCGAGATATTGTTAATCTGACTTTCGAAATTGCTTTGCAACAA
ATTGTTGAAGTGAACGAAAAAGAAGAATCACTATCAATCAGTGTGTTCTT
TCGACAATATTGGCATGATCCAAACCTCATGTGGGATCCTTTAGATTACG
GCAACGTCACATCAACGAATTTCAACCCTGAGATGTTATGGAAACCGGAT
GTTGCTCTGTATAATAATGTGGAAAAAGACGTTGAATTTGGAGGTCAATT
AGATTTATTAAAAAATCGTATCATTGTATATCACGATGGTAATGTCGTGT
GGTATTCACTTGGTATCTTAAATGGGAAATGCCCTATGAACATCCGGTAT
TTCCCTTTCGACACGCAGATttgtgatttcaaatttggaccatgGACTTA
TCATGGGCATTTAGTGGATATATATCCGAAACGTCAAGTTGTAGACACAG
CGGCTTATACAATCCATTCGGAGTGGCATTTGAAGAGCGCCGAACATATA
CGTAACGTTGCGTATTACGGTTGTTGCGTAGAGCCGTACCCTGACGTCAC
CGTTAAAATTGTTTTGGAGAGAAGGCCGTTATTTTAcgtattgaatctat
tgttacCAATGATTTTGATCGGCGTTTTAACGTTATTGGCGTTTTATTTA
CCGGCACAATCAGGAGAACGTGTTTCATTTGCTGTCACGCTACTATTGGC
TATGACGGTTTTTATGTTGATCGTGGCTGACATGGTTCCCGCCAGCTCTG
AAACCATACCTCTGCTAGGGATTTTTTTCACAGCTGTTATGGTGGAAATG
GTTCTAATGGTTTTCTCAATGTGTTACGTTTTAAAGCTACATCTTATACA
GCCGGATGACGGGGAAGAAATAGGGCCGTTCATGCGACGTTTTGTATACG
ATTTCCTATCATACAAATTTGGAACACGTAAACGGAGGACGGATTTCGCT
CGCGATGAATACAAATTTCATTTACAAGATTCAAAAACATGGGACAAAAA
TGGTAGCactaaaagtcataatggcGGTCATAGTTATGGTCAAGTGATTA
ATAATGGTCAAGATGACGGCAGCCGAAATATCGGAGCCGGTGATGTTGAT
GATTCATCGACGGCAGCCCTTATGGAGAAAAATTTAAGAGTTATGACTGA
TAAGATgaaggaagaagaaaatgagAAACGCATTAAGCAGGAATTTGAGA
TCTGTGCAACGACATTGGATATTCTAGCACTTATTTGTTTTGTGGCGCTC
TTCATTTTGATAACAACGGTATATTTTGTGGCAACTACTTGAATGGATTT
GACAATATGTTACATGGTTACCATGGCCACCATTTTGGTCTCGATCATTG
ATGCACAAAAAGGAAACTACTCTCGTGGACTAAGCGGAGAATTTAGatta
aagaaatttctaatGGATGAATACAACCCTGAAGTGAGACCAGTCGTCAA
TGATCGAGATATTGTTAATCTGACTTTCGAAATTGCTTTGCAACAAATTG
TTGAAGTGAACGAAAAAGAAGAATCACTATCAATCAGTGTGTTCTTTCGA
CAATATTGGCATGATCCAAACCTCATGTGGGATCCTTTAGATTACGGCAA
CGTCACATCAACGAATTTCAACCCTGAGATGTTATGGAAACCGGATGTTG
CTCTGTATAATAATGTGGAAAAAGACGTTGAATTTGGAGGTCAATTAGAT
TTATTAAAAAATCGTATCATTGTATATCACGATGGTAATGTCGTGTGGTA
TTCACTTGGTATCTTAAATGGGAAATGCCCTATGAACATCCGGTATTTCC
CTTTCGACACGCAGATttgtgatttcaaatttggaccatgGACTTATCAT
GGGCATTTAGTGGATATATATCCGAAACGTCAAGTTGTAGACACAGCGGC
TTATACAATCCATTCGGAGTGGCATTTGAAGAGCGCCGAACATATACGTA
ACGTTGCGTATTACGGTTGTTGCGTAGAGCCGTACCCTGACGTCACCGTT
AAAATTGTTTTGGAGAGAAGGCCGTTATTTTAcgtattgaatctattgtt
acCAATGATTTTGATCGGCGTTTTAACGTTATTGGCGTTTTATTTACCGG
CACAATCAGGAGAACGTGTTTCATTTGCTGTCACGCTACTATTGGCTATG
ACGGTTTTTATGTTGATCGTGGCTGACATGGTTCCCGCCAGCTCTGAAAC
CATACCTCTGCTAGGGATTTTTTTCACAGCTGTTATGGTGGAAATGGTTC
TAATGGTTTTCTCAATGTGTTACGTTTTAAAGCTACATCTTATACAGCCG
GATGACGGGGAAGAAATAGGGCCGTTCATGCGACGTTTTGTATACGATTT
CCTATCATACAAATTTGGAACACGTAAACGGAGGACGGATTTCGCTCGCG
ATGAATACAAATTTCATTTACAAGATTCAAAAACATGGGACAAAAATGGT
AGCactaaaagtcataatggcGGTCATAGTTATGGTCAAGTGATTAATAA
TGGTCAAGATGACGGCAGCCGAAATATCGGAGCCGGTGATGTTGATGATT
CATCGACGGCAGCCCTTATGGAGAAAAATTTAAGAGTTATGACTGATAAG
ATgaaggaagaagaaaatgagAAACGCATTAAGCAGGAATTTGAGATCTG
TGCAACGACATTGGATATTCTAGCACTTATTTGTTTTGTGGCGCTCTTCA
TTTTGATAACAACGGTATATTTTGTGGCAACTACTTGAATGGATTTGACA
ATATGTTACATGGTTACCATGGCCACCATTTTGGTCTCGATCATTGATGC
ACAAAAAGGAAACTACTCTCGTGGACTAAGCGGAGAATTTAGattaaaga
aatttctaatGGATGAATACAACCCTGAAGTGAGACCAGTCGTCAATGAT
CGAGATATTGTTAATCTGACTTTCGAAATTGCTTTGCAACAAATTGTTGA
AGTGAACGAAAAAGAAGAATCACTATCAATCAGTGTGTTCTTTCGACAAT
ATTGGCATGATCCAAACCTCATGTGGGATCCTTTAGATTACGGCAACGTC
ACATCAACGAATTTCAACCCTGAGATGTTATGGAAACCGGATGTTGCTCT
GTATAATAATGTGGAAAAAGACGTTGAATTTGGAGGTCAATTAGATTTAT
TAAAAAATCGTATCATTGTATATCACGATGGTAATGTCGTGTGGTATTCA
CTTGGTATCTTAAATGGGAAATGCCCTATGAACATCCGGTATTTCCCTTT
CGACACGCAGATttgtgatttcaaatttggaccatgGACTTATCATGGGC
ATTTAGTGGATATATATCCGAAACGTCAAGTTGTAGACACAGCGGCTTAT
ACAATCCATTCGGAGTGGCATTTGAAGAGCGCCGAACATATACGTAACGT
TGCGTATTACGGTTGTTGCGTAGAGCCGTACCCTGACGTCACCGTTAAAA
TTGTTTTGGAGAGAAGGCCGTTATTTTAcgtattgaatctattgttacCA
ATGATTTTGATCGGCGTTTTAACGTTATTGGCGTTTTATTTACCGGCACA
ATCAGGAGAACGTGTTTCATTTGCTGTCACGCTACTATTGGCTATGACGG
TTTTTATGTTGATCGTGGCTGACATGGTTCCCGCCAGCTCTGAAACCATA
CCTCTGCTAGGGATTTTTTTCACAGCTGTTATGGTGGAAATGGTTCTAAT
GGTTTTCTCAATGTGTTACGTTTTAAAGCTACATCTTATACAGCCGGATG
ACGGGGAAGAAATAGGGCCGTTCATGCGACGTTTTGTATACGATTTCCTA
TCATACAAATTTGGAACACGTAAACGGAGGACGGATTTCGCTCGCGATGA
ATACAAATTTCATTTACAAGATTCAAAAACATGGGACAAAAATGGTAGCa
ctaaaagtcataatggcGGTCATAGTTATGGTCAAGTGATTAATAATGGT
CAAGATGACGGCAGCCGAAATATCGGAGCCGGTGATGTTGATGATTCATC
GACGGCAGCCCTTATGGAGAAAAATTTAAGAGTTATGACTGATAAGATga
aggaagaagaaaatgagAAACGCATTAAGCAGGAATTTGAGATCTGTGCA
ACGACATTGGATATTCTAGCACTTATTTGTTTTGTGGCGCTCTTCATTTT
GATAACAACGGTATATTTTGTGGCAACTACTTGAATGGATTTGACAATAT
GTTACATGGTTACCATGGCCACCATTTTGGTCTCGATCATTGATGCACAA
AAAGGAAACTACTCTCGTGGACTAAGCGGAGAATTTAGattaaagaaatt
tctaatGGATGAATACAACCCTGAAGTGAGACCAGTCGTCAATGATCGAG
ATATTGTTAATCTGACTTTCGAAATTGCTTTGCAACAAATTGTTGAAGTG
AACGAAAAAGAAGAATCACTATCAATCAGTGTGTTCTTTCGACAATATTG
GCATGATCCAAACCTCATGTGGGATCCTTTAGATTACGGCAACGTCACAT
CAACGAATTTCAACCCTGAGATGTTATGGAAACCGGATGTTGCTCTGTAT
AATAATGTGGAAAAAGACGTTGAATTTGGAGGTCAATTAGATTTATTAAA
AAATCGTATCATTGTATATCACGATGGTAATGTCGTGTGGTATTCACTTG
GTATCTTAAATGGGAAATGCCCTATGAACATCCGGTATTTCCCTTTCGAC
ACGCAGATttgtgatttcaaatttggaccatgGACTTATCATGGGCATTT
AGTGGATATATATCCGAAACGTCAAGTTGTAGACACAGCGGCTTATACAA
TCCATTCGGAGTGGCATTTGAAGAGCGCCGAACATATACGTAACGTTGCG
TATTACGGTTGTTGCGTAGAGCCGTACCCTGACGTCACCGTTAAAATTGT
TTTGGAGAGAAGGCCGTTATTTTAcgtattgaatctattgttacCAATGA
TTTTGATCGGCGTTTTAACGTTATTGGCGTTTTATTTACCGGCACAATCA
GGAGAACGTGTTTCATTTGCTGTCACGCTACTATTGGCTATGACGGTTTT
TATGTTGATCGTGGCTGACATGGTTCCCGCCAGCTCTGAAACCATACCTC
TGCTAGGGATTTTTTTCACAGCTGTTATGGTGGAAATGGTTCTAATGGTT
TTCTCAATGTGTTACGTTTTAAAGCTACATCTTATACAGCCGGATGACGG
GGAAGAAATAGGGCCGTTCATGCGACGTTTTGTATACGATTTCCTATCAT
ACAAATTTGGAACACGTAAACGGAGGACGGATTTCGCTCGCGATGAATAC
AAATTTCATTTACAAGATTCAAAAACATGGGACAAAAATGGTAGCactaa
aagtcataatggcGGTCATAGTTATGGTCAAGTGATTAATAATGGTCAAG
ATGACGGCAGCCGAAATATCGGAGCCGGTGATGTTGATGATTCATCGACG
GCAGCCCTTATGGAGAAAAATTTAAGAGTTATGACTGATAAGATgaagga
agaagaaaatgagAAACGCATTAAGCAGGAATTTGAGATCTGTGCAACGA
CATTGGATATTCTAGCACTTATTTGTTTTGTGGCGCTCTTCATTTTGATA
ACAACGGTATATTTTGTGGCAACTACTTGAATGGATTTGACAATATGTTA
CATGGTTACCATGGCCACCATTTTGGTCTCGATCATTGATGCACAAAAAG
GAAACTACTCTCGTGGACTAAGCGGAGAATTTAGattaaagaaatttcta
atGGATGAATACAACCCTGAAGTGAGACCAGTCGTCAATGATCGAGATAT
TGTTAATCTGACTTTCGAAATTGCTTTGCAACAAATTGTTGAAGTGAACG
AAAAAGAAGAATCACTATCAATCAGTGTGTTCTTTCGACAATATTGGCAT
GATCCAAACCTCATGTGGGATCCTTTAGATTACGGCAACGTCACATCAAC
GAATTTCAACCCTGAGATGTTATGGAAACCGGATGTTGCTCTGTATAATA
ATGTGGAAAAAGACGTTGAATTTGGAGGTCAATTAGATTTATTAAAAAAT
CGTATCATTGTATATCACGATGGTAATGTCGTGTGGTATTCACTTGGTAT
CTTAAATGGGAAATGCCCTATGAACATCCGGTATTTCCCTTTCGACACGC
AGATttgtgatttcaaatttggaccatgGACTTATCATGGGCATTTAGTG
GATATATATCCGAAACGTCAAGTTGTAGACACAGCGGCTTATACAATCCA
TTCGGAGTGGCATTTGAAGAGCGCCGAACATATACGTAACGTTGCGTATT
ACGGTTGTTGCGTAGAGCCGTACCCTGACGTCACCGTTAAAATTGTTTTG
GAGAGAAGGCCGTTATTTTAcgtattgaatctattgttacCAATGATTTT
GATCGGCGTTTTAACGTTATTGGCGTTTTATTTACCGGCACAATCAGGAG
AACGTGTTTCATTTGCTGTCACGCTACTATTGGCTATGACGGTTTTTATG
TTGATCGTGGCTGACATGGTTCCCGCCAGCTCTGAAACCATACCTCTGCT
AGGGATTTTTTTCACAGCTGTTATGGTGGAAATGGTTCTAATGGTTTTCT
CAATGTGTTACGTTTTAAAGCTACATCTTATACAGCCGGATGACGGGGAA
GAAATAGGGCCGTTCATGCGACGTTTTGTATACGATTTCCTATCATACAA
ATTTGGAACACGTAAACGGAGGACGGATTTCGCTCGCGATGAATACAAAT
TTCATTTACAAGATTCAAAAACATGGGACAAAAATGGTAGCactaaaagt
cataatggcGGTCATAGTTATGGTCAAGTGATTAATAATGGTCAAGATGA
CGGCAGCCGAAATATCGGAGCCGGTGATGTTGATGATTCATCGACGGCAG
CCCTTATGGAGAAAAATTTAAGAGTTATGACTGATAAGATgaaggaagaa
gaaaatgagAAACGCATTAAGCAGGAATTTGAGATCTGTGCAACGACATT
GGATATTCTAGCACTTATTTGTTTTGTGGCGCTCTTCATTTTGATAACAA
CGGTATATTTTGTGGCAACTACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030243XLOC_030243Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047480-proteinTCONS_00047480-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047480-exon-scaffold_13-1491911889:97888..98073TCONS_00047480-exon-scaffold_13-1491911889:97888..98073Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1510915933:97888..98073TCONS_00047480-exon-scaffold_13-1510915933:97888..98073Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1575043694:97888..98073TCONS_00047480-exon-scaffold_13-1575043694:97888..98073Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1491911889:98909..99054TCONS_00047480-exon-scaffold_13-1491911889:98909..99054Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1510915933:98909..99054TCONS_00047480-exon-scaffold_13-1510915933:98909..99054Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1575043694:98909..99054TCONS_00047480-exon-scaffold_13-1575043694:98909..99054Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1491911889:99399..99553TCONS_00047480-exon-scaffold_13-1491911889:99399..99553Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1510915933:99399..99553TCONS_00047480-exon-scaffold_13-1510915933:99399..99553Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1575043694:99399..99553TCONS_00047480-exon-scaffold_13-1575043694:99399..99553Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1491911889:99949..100181TCONS_00047480-exon-scaffold_13-1491911889:99949..100181Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1510915933:99949..100181TCONS_00047480-exon-scaffold_13-1510915933:99949..100181Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1575043694:99949..100181TCONS_00047480-exon-scaffold_13-1575043694:99949..100181Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1491911889:100651..100863TCONS_00047480-exon-scaffold_13-1491911889:100651..100863Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1510915933:100651..100863TCONS_00047480-exon-scaffold_13-1510915933:100651..100863Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1575043694:100651..100863TCONS_00047480-exon-scaffold_13-1575043694:100651..100863Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1491911889:101822..103037TCONS_00047480-exon-scaffold_13-1491911889:101822..103037Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1510915933:101822..103037TCONS_00047480-exon-scaffold_13-1510915933:101822..103037Clytia hemisphaericaexon
TCONS_00047480-exon-scaffold_13-1575043694:101822..103037TCONS_00047480-exon-scaffold_13-1575043694:101822..103037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:97888..103037 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0182875	0.0178332	0.0414121	0.0405153	0	0.19488	0.728855	0.96849	1.0325	0.458122	0.389081	0.816018	2.4933	2.22302	5.36865	4.35726	8.20956	10.0186	4.2768	4.06851	13.5616	12.9883	1.69841	2.55445	4.00543	3.41704	43.0551	22.6938	2.53721	2.06801
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00047480 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 242.662 bits (618), Expect = 6.869e-71
Identity = 143/475 (30.11%), Postives = 244/475 (51.37%), Query Frame = 3 
Query:  204 LSGEF--RLKKFLMDEYNPEVRPVVNDRDIVNLTFEIALQQIVEVNEKEESLSISVFFRQYWHDPNLMWDPLDYGNVTSTNFNPEMLWKPDVALYNNVEK--DVEFGGQLDLLKNRIIVYHDGNVVWYSLGILNGKCPMNIRYFPFDTQICDFKFGPWTYHGHLVDIYPKRQVVDTAAYTIHSEWHLKSAEHIRNVAYYGCCVEPYPDVTVKIVLERRPLFYVLNLLLPMILIGVLTLLAFYLPAQSGERVSFAVTLLLAMTVFMLIVADMVPASSETIPLLGIFFTAVMVEMVLMVFSMCYVLKLHLIQPDDGEEIGPFMRRFVYDFLSY-----KFGTRKRRTDFARDEYKFHLQDS--------------------KTWDKNGSTKSHNGGHSYGQVINNGQDDGSRNIGAGDVDDSSTAALMEKNLRVMTDKMKEEENEKRIKQEFEICATTLDILALICFVALFILITTV 1541
            L GEF  +L K L+  YNP  RPV ND   + + F ++L QI++V+EK + L+ +++ +  W D  L W+  +Y  V +  F    +WKPD+ LYN+ ++  D  F          ++V   G+  +   GI    C +++R+FPFD Q C  KFG W+Y G  +D+  + Q  D + Y  + EW L      R+  +Y CC EPYPDVT  + + RR L+Y LNLL+P +LI  L LL F LPA SGE++S  +T+LL++TVFML+VA+++PA+S+++PL+  +F + M+ + L V     VL+ H   PD G ++  + R  + ++ ++     + G  K R      + +  L                       +  D      + + G   G++  +   D     G    +     A + + +R + ++ + ++  + +  E++  A  +D L L+ F ++F +I T+
Sbjct:   21 LQGEFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADERFDATF-------HTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDL--QMQEADISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGG-KMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDRLCLMAF-SVFTIICTI 484
The following BLAST results are available for this feature:
BLAST of TCONS_00047480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA76.869e-7130.11Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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