TCONS_00047475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047475
Unique NameTCONS_00047475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047475 ID=TCONS_00047475|Name=TCONS_00047475|organism=Clytia hemisphaerica|type=transcript|length=1558bp
GAATTGCAAGAGCGCATGCACGTTCGAATACGACCCACGTTGCGCTTCCA
ACGGTCGAACATACGATAACAACTGTCTTCTATCCATTGCACATTGTCAT
GATTCAAACGTCAAATTCAAACATTGGGGACGTTGCGGTACTTGTTCTGA
AAAGTGTCCAAGAAATATTGATTACGTTTGTGGTTCAGACGGGAAGACTT
ATGCCAACGAATGTGAATTGAATAAACAAAGATGTTACCATGATCGAAAC
CTTCGCAAACAATCTCCTGGTCGATGTGTCGTTGAGATGGAATTCATCGT
CAAAGGTCAACTGGCTTTACCATATCAATTCAGAGGGAATCTTCCTGAAG
AAAGTTGCATGAAAGTGTTTGTAACCAAGGAAGTGTGTGGCTCCACTACT
TCTTGCTTGGCATCAGTCAAAGGAGTCTTGACAACCAAACAACCAAATAT
AAGATACAACCAGATTGATTATCAACTGACGGTCAACGAACAACCTGGAA
TGTATTATCTTAATGCACGCTTGTATCGAGGGTGGTGTCCGTCTTCGAGA
AACTATCAATTACGTGATGGAGATTTGTATAATCGAGACAAGGAGATTGT
TTACTTTCACCATAACGACAAGACGAAGAAAGTTCCGGTTATTAAAATGA
CTTATTTCGGAAATCCTGATCAAAACCAATGTGTAAAGCACTGTCGATTA
GTGGAGGATTTTGTTTGTGGTACGGACAAAGTAACCTACACAAATCCTTG
TCTGTTGGCCATCAAAACATGTACATCCAATGGAGTGGTCAAGAAAGCTC
ATAACGGAAAGTGTGAAGCCTAAAGGAGATTGTGAACGCACCAGTTATCC
ATACTCATGTTTACGCAGAGGATTTTATTGGTATTTTGATTACTACCTCA
ACCGCTGTATGCGCCGCTACGGCTGTCCTGGCTCCGCCAACAATTTCGTG
AATGAAGAAACATGCCAAGCTACCTGTGCGAAGAATAAATGTGACATCCA
GTGCAATGATTCACTCAATTACCCAGTCTGTGGAACAAATAATCTCACTT
ATTCAAACCGTTGTCAGTTGAAGAAAGCGGAATGCGAAATGAATGGGCGA
GTCAAATTGGCTTACAATGGAAAGTGTAATGGACACCAAATCAATCGCCA
TGGTTAATCACACGACCGAAATATGACGTGATCGAatgatgatgacgtca
cttCGAGCTGTTCCAACATTCTAAGTATTTTaagggttatgattttttta
tgattccAATTTTCTATGCGACCTTTTTAACCGTTATCGCCGGCGATATA
TACTCAGTGAGATATAGAAGATGGCTACAGTTCTATGTAGGATTTGAAGT
CAACTTTTTTCCTGCCTAGGTTTGCCGGGCCGCGTGGTTTTCATAAATCC
AAAAACTGAGTAAAAAAGCTGCTAGTCTATATCTCATTGTGTACGCTTGC
CATCGAGTAACTGTTCcgacttttttataaaaaattatacgATTACAATC
TTTTAGAGATGAGgaacattattatttttttaaacattttatacCCATAT
TATTTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_13:39847..46607+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047475 ID=TCONS_00047475|Name=TCONS_00047475|organism=Clytia hemisphaerica|type=transcript|length=6761bp|location=Sequence derived from alignment at scaffold_13:39847..46607+ (Clytia hemisphaerica)
GAATTGCAAGAGCGCATGCACGTTCGAATACGACCCACGTTGCGCTTCCA
ACGGTCGAACATACGATAACAACTGTCTTCTATCCATTGCACATTGTCAT
GATTCAAACGTCAAATTCAAACATTGGGGACGTTGCGGTAAGTAGTGTCT
GTAAACGTGCATGTGGATTATTTTATGGTTcaatggagtctctttaactc
gaacctctataactcgaatgtcacattaactcaaattttctggtcccttc
agttacaATGCCTCATATAAAACTTACTCCAAAACTCGAATTTCcttatt
ttgaacaaatttgtgctcCCCGTGTGTGCTCGATTTGTGTTCAGCCGTTT
CTGTATCTGAGAAGCTATATCGATAATATAAAGATTGCTATGGAAAGTTT
TGCTTGATTTGCATTGAAACCAACACATTCCAACATTGATTTTGAATATC
CACGAGGCCTTCGGGTCAAAAGGTTGTTATACCCTCTAATGATTTGTCTG
TAATTGTTACAATCTTTCCAAAATACTTAGGTACTTGTTCTGAAAAGTGT
CCAAGAAATATTGATTACGTTTGTGGTTCAGACGGGAAGACTTATGCCAA
CGAATGTGAATTGAATAAACAAAGATGTTACCATGATCGAAACCTTCGCA
AACAATCTCCTGGTCGATGTGGTAAGTTCCGTTGCAATGAAGATATTGAC
AGTGTTGACTTTTCCATCTCAAAATTCTGCACAATTCACCGAAATTTAAG
AATATGTataatttgctgtgtaaaatgcattttccgtctcagttgaaaaa
ccttgctttgaccacaGTATTACACCCCCTTCCCTTAGCCTTTTTAGGGA
GATCAGTCTTTTGATTCAGCCACAGCTATGCATAAGATTTGAAGAAGCGA
TGAGTTAAATCGGGAATCCCTGGTTTGCCGTGGATTAAGTGTTATAAACC
AGTCGGCCAAAACCATCATCCCTTGATAATTTTTTGGATAAGCTAATATT
ACCGTCCATACTTAGATTTTTAATTTGTCcctgaaaaataatatttgcag
aCGCTACTTcgatttttgtttgcttttattctTTGTGAATAAAAATTCGT
TTAAATTCTTCCGAATACAGTGTCCCGAAAAAGAGggcaaatttgaatat
aaagtaaaatcctgaAAACTCATTATCAAGTGTCCGagtcatgaaatttg
gcataaatTATAAGGACTTTGCTTTATATAAAAGTTTGTccacttttttc
gggacacactgtattttttatttaaccagcaTAACTATTGTATTTCAGTC
GTTGAGATGGAATTCATCGTCAAAGGTCAACTGGCTTTACCATATCAATT
CAGAGGGAATCTTCCTGAAGAAAGTTGCATGAAAGTGTTTGTAACCAAGG
AAGTGTGTGGCTCCACTACTTCTTGCTTGGCATCAGTCAAAGGAGTCTTG
ACAACCAAACAACCAAATATAAGATACAACCAGATTGATTATCAACTGAC
GGTCAACGAACAACCTGGAATGTATTATCTTAAGTgggtgtttttttatt
ttggttataCTGTTTTATTTTTCGGGGATTTTTTATCTGGTCCAAACCAG
TCAGGACGATGACACGTTTTTAACACTAAACTATTACGACCACAACTCAA
AACCGGTAAAGAGGGTAGAGGTAAAACTCTagctagaaaaaaaattgcag
tGGTAGTGTCTCGAGGAAACAACCGCCAAACTTGATCGGCTGTGAACATG
CTTCGTTAGAGAAACCAAATCACGATACACCAAATTTTCTTGAATATTTG
TTTATCTTAAACTATAGCATAGTGTTCTATATTTCTAAAACCTATTTTAG
TGCACGCTTGTATCGAGGGTGGTGTCCGTCTTCGAGAAACTATCAATTAC
GTGATGGAGATTTGTATAATCGAGACAAGGAGATTGTTTACTTTCACCAT
AACGACAAGACGAAGAAAGTTCCGGTTATTAAAATGACTTATTTCGGAAA
TCCTGGTAAGATGGACAGAAAGTGTACCTGAACCTGAAAtttaaataaat
gtttttaacaAGTATCATTGCTCTCTACATCGCCGATCCTCGTCCCCATG
TaacccaggctttatttactttAATGATGGACGGCAGAGAATCTAGTGCT
ATCGATAACCATAAAAAAGCTGACAGTACGCAGGAAACGAGGTTGTACAT
CGCCCCTTTTTTGTTACTTTAGCACAAAAATAAATCGAGTGCAACTTCGA
TCAAAAATAGCGGAAAAAGTTTAGTTCAGGAGCTCTAAGtctcttttctt
tctttaatattttttatcagATCAAAACCAATGTGTAAAGCACTGTCGAT
TAGTGGAGGATTTTGTTTGTGGTACGGACAAAGTAACCTACACAAATCCT
TGTCTGTTGGCCATCAAAACATGTACATCCAATGGAGTGGTCAAGAAAGC
TCATAACGGAAAGTGTGGTATGTTAACAGTGTTTTAGAGTTCTTCTTTTA
TAGATTACGGAAAAATAAGTCGTTTCAGGTCTGGAGTTGATATATATTTT
CAGCTACCTCATCAGGTAGGTTTGAAATTGTTTTAAGTTTTTAGCTAGTC
TGAATCGTAGACCGCTGGTAGTATAAGGAGCATGAATCTTTCCAAGCTAC
AAGGTTTTTGCCTTGTAGCAAATAAGACAATATGTATGATGTAACCGTGC
AAAGACCCATTTTTAGAAGAtttcgactttggaaaatagttaagATGTGT
AATTTacctctagtttagacggcggactttctgccctgcctattctaatt
attagagtaggcagaaagtggGCGCCAAGTCgacagttaaaatctttgct
tagaaaagattaaaataagtcattgcattgacgccAAAAGAGAGCAatac
attgactttagacagcccactttatgtccactctaattcacaattagaat
atgcagggcgaaaagtgggccatCTAAACTAGAGTTTACCCTCTTTCAGG
AAAGAAGCCTAAAGGAGATTGTGAACGCACCAGTTATCCATACTCATGTT
TACGCAGAGGATTTTATTGGTATTTTGATTACTACCTCAACCGCTGTATG
CGCCGCTACGGCTGTCCTGGCTCCGCCAACAATTTCGTGAATGAAGAAAC
ATGCCAAGCTACCTGTGGTAAGTGAAAATCGCTTTGGTTGATAACCCCTA
TCAGATTCTATTTTTATGGTTAAAAAAAAGTGATAATGATtagtttatta
ttcgttttattcTGGCCGAATATATGGTAAAATCTAATTCGACGTTCCCA
CTCATTCATTTGAAAGGCGGTCTTTTAATACAGTTGTGGTTTGTACTTGC
GTGACGCGGTCCGAAAATACTTTTGACGGAAATCGAGCTTACAAGTTTAG
CTTGGAGAAAGATTTGAGgctatataaatattttttagtcgctcaatttc
aaaatcttttggtCAATTGACCCGAAATTACTCGGAGAAGATAGACTTTT
TTTGTTGCTAAGtgctgaaaattttttattaaaaaaagattgGTAAGAAC
TACCCTTAATCGAGGGGCCAAAGTCCCATACATTCCTAAAGTCAATTCGC
TTTAAGTGTCACCCTTAAGCtttctattaaaaaatgaaatttagtgGAGN
CTAAAGTCAATTCGCTTTAAGTGTCACCCTTAagctttcttttaaaaaat
gaaaattagtgGAACACATACCATACAGGAGCAGTACAGGCTAAATATAA
TTTGTTGTGTTGTCATTTTCAGCGAAGAATAAATGTGACATCCAGTGCAA
TGATTCACTCAATTACCCAGTCTGTGGAACAAATAATCTCACTTATTCAA
ACCGTTGTCAGTTGAAGAAAGCGGAATGCGAAATGAATGGGCGAGTCAAA
TTGGCTTACAATGGAAAGTGTAGtaagtatttttattttctttgagtGTG
TTTTTGTTTTGGTACAGTAAACCTGACATATTTGTTCGAGTTTGTGAAGg
gttgaaaatttaaaagaaacatttgatttttagaataataataatagtat
ctaaaaaataagaaaataagattATGAAACTGAAGCGTGGTttcctttgt
ttacatttgggtGCTGGTTACCATAGCGACTCAAAAAGGAGTGGTTATAA
AGAGCTCTGTGACCAAGCTATCAAAATCGGCGTCGAATTGTTGAACCAGA
GTAAATCATGTATTGAAGTTGCTACAGCTGTCACCTCGCACCTTGAAAAT
AGTCCATTGACAAATGCGGGATTTGGTTCCAATTTAACTCAAGATGGTAG
CGTCGAGTGCGaggccgccattatggaatctAACGAAAATAAATTTGCAG
CTGTCGGGTGTGTAAAAGAAATTTGGAATCCAATTCAAGCTGCTGAAATC
GTTTTAAGAGAGCAAAAGAGACATGATTTAGGGCTAGTTCCGCCCATGGT
ATTAGTGGGCGACCACGTTGCTAAAAAAGCTAAGGAGATGAACTTGAAGA
CGATAGAAAATAAAGTGCTCGTTTCAACAAAGGCTCAAAAggattttgtg
aaatttcaaaACCGTTTAAACGCGAGAAGTAGTGGAGGAAAAACTCTCAA
AAGAACAAGAGAAGGATCAAAAACAACCTTTGACGAATCTTCATcggtca
aacaatcaaaatttgacCCTTTGTCTAGTTATTCTGAATGCTCAACTATT
AGAGCTGTTGATGTATTGGAATCACCGATTAACTCGAATGAAAGCCTACT
CTCCAAAGAAGATGCCATTTCAAATGAGTTAAGTGAGACTTGTGAAGATT
TGAGGAAGCACTCTGGATTGTTTGTGAATGACCAAAGTCGAAACTCCACC
TTACAAACAGAGCTTAAACCACCAATAAGCTCTGCGCATTTTTCGGACAT
TGATGTCTATTTTTCGGACACTGAAGACTTAATCAGTGACACTATCGGAG
TCATTTGTGTCGACCATGATTTCAATGTCGCTTCTGCAATCTCAAGCGGT
GGACTTGCAATGAAGCAACCTGGTCGTTTGGGGCCGTGCACGAGCTTCGG
AGCCGGATGTTGGTCCTTTACATATGATGAAAACACAACGATTTCCGCAT
GTTGTTCTGGTACGGGAGAGGCGATAATACGGACACACCTTGCTCAGAAC
GCGTGTGATTTCTTGTACCGTGATCCTGGGAATATACTGAAATTAGATTC
CTTTATTAACGATTATTTCACTTCTTCAAGACTTGTACCTGATCACTTGG
AACCGAGGCTGTGTGGGTTGCTATTGGTAACGCTCAgtaaaaacaaagat
ggtagaAAAGCTATGATTGACTTTCAATTGGTTCACACGGCTGATTCTTT
TTGTGTGAGCTGTATTTCTGCCGGTGAGAAGGAGGCAAATTTTATGATTT
CTCGTTTGAAATCTGAAGAAAGGGTTGTAACAAAAgcctttcatttttca
atttgatCTTAAGATTGATCACCAATGTTTAAATTGATAGCCAAGCAAGC
TCAAAGATTCAGTAATACTTTTCTTCTTCCTAAATGTTTCTATAAAAAGA
GAGCTTGCTTGGCTACATGGTGAAAATTGTACATCTTTTTTTATAAcgca
aacattttttttgaaaaaattatgtggtattataattataattataatCA
TCTTCCCCGTTTATTTAATGGAGTATTAAATATGATGGCTTTTAATATCT
TCTAtgcccgggggtactaggtttgcgaggtaacgggtatgtccgagcca
aaaatcgaaaatcgaccctttagAGAGAGGACAAATTGGCGTTTTttgga
cccttagagagacttttctgaaaattcttatcgatttttgtccaaatttt
ggaaaatcacaaccttttgagagaggaaattttgaattttgtgatttttg
gacccttacagagactcaatttcttttttcccattttgcctaagtacccc
ccccccctgggcttCTATGTTTGCACAAAGAGAGGCAATGAGCTGTTCCA
TTAAGAATCAATACAGGTGTTGGTCATTTTCAggtcaaaaagaaattctt
ggAATTCAGGGATACCTCCTGGAGAACTCCTGGAGAAAGGCAAAATTCTC
AATAAAGCTcttggacccccccccccccctatatgGATACACAATTAAta
ataatttgaatttaaaatttttaactaTTACATGTAGCCgatagaatttt
gaaaaattgcaagtGCTTAAAAGAAAATCTGTTTGAACTGATTTGGTATA
GGCGCTTGCAATTTGTAGCCGCCTGTAGCTTAAGTGTCTCGTCTATTCTA
CAagttttttgtatatatttttccaTAACAGATGGACACCAAATCAATCG
CCATGGTTAATCACACGACCGAAATATGACGTGATCGAatgatgatgacg
tcacttCGAGCTGTTCCAACATTCTAAGTATTTTaagggttatgattttt
ttatgattccAATTTTCTATGCGACCTTTTTAACCGTTATCGCCGGCGAT
ATATACTCAGTGAGATATAGAAGATGGCTACAGTTCTATGTAGGATTTGA
AGTCAACTTTTTTCCTGCCTAGGTTTGCCGGGCCGCGTGGTTTTCATAAA
TCCAAAAACTGAGTAAAAAAGCTGCTAGTCTATATCTCATTGTGTACGCT
TGCCATCGAGTAACTGTTCcgacttttttataaaaaattatacgATTACA
ATCTTTTAGAGATGAGgaacattattatttttttaaacattttatacCCA
TATTATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030240XLOC_030240Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047475-exon-scaffold_13-1491911889:39847..39983TCONS_00047475-exon-scaffold_13-1491911889:39847..39983Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:39847..39983TCONS_00047475-exon-scaffold_13-1510915933:39847..39983Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:39847..39983TCONS_00047475-exon-scaffold_13-1575043694:39847..39983Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:40377..40517TCONS_00047475-exon-scaffold_13-1491911889:40377..40517Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:40377..40517TCONS_00047475-exon-scaffold_13-1510915933:40377..40517Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:40377..40517TCONS_00047475-exon-scaffold_13-1575043694:40377..40517Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:41145..41379TCONS_00047475-exon-scaffold_13-1491911889:41145..41379Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:41145..41379TCONS_00047475-exon-scaffold_13-1510915933:41145..41379Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:41145..41379TCONS_00047475-exon-scaffold_13-1575043694:41145..41379Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:41697..41851TCONS_00047475-exon-scaffold_13-1491911889:41697..41851Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:41697..41851TCONS_00047475-exon-scaffold_13-1510915933:41697..41851Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:41697..41851TCONS_00047475-exon-scaffold_13-1575043694:41697..41851Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:42167..42313TCONS_00047475-exon-scaffold_13-1491911889:42167..42313Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:42167..42313TCONS_00047475-exon-scaffold_13-1510915933:42167..42313Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:42167..42313TCONS_00047475-exon-scaffold_13-1575043694:42167..42313Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:42851..43013TCONS_00047475-exon-scaffold_13-1491911889:42851..43013Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:42851..43013TCONS_00047475-exon-scaffold_13-1510915933:42851..43013Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:42851..43013TCONS_00047475-exon-scaffold_13-1575043694:42851..43013Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:43619..43768TCONS_00047475-exon-scaffold_13-1491911889:43619..43768Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:43619..43768TCONS_00047475-exon-scaffold_13-1510915933:43619..43768Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:43619..43768TCONS_00047475-exon-scaffold_13-1575043694:43619..43768Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1491911889:46178..46607TCONS_00047475-exon-scaffold_13-1491911889:46178..46607Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1510915933:46178..46607TCONS_00047475-exon-scaffold_13-1510915933:46178..46607Clytia hemisphaericaexon
TCONS_00047475-exon-scaffold_13-1575043694:46178..46607TCONS_00047475-exon-scaffold_13-1575043694:46178..46607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:39847..46607 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.172894	0.76252	0	0.726872	0	0	0	0	0	0	0	0	0.514206	0	0	0.884774	0	0	5.2337e-07	0	0	0.363572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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