TCONS_00047464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047464
Unique NameTCONS_00047464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047464 ID=TCONS_00047464|Name=TCONS_00047464|organism=Clytia hemisphaerica|type=transcript|length=423bp
AAATGGGCCTTTTTTGAAGCCGGGAAATTTTCGAACATCCGCCATCTTTG
GGACccctttgtttacatttttgctTAGTAGCGCGGAGGTATGGGGATag
catttttgtaaacaaaccaaaaaaaaatcaaaacaaaccaaaaaccaaaa
caaacttgaaacgaaaacgaaagtcaAGCAATtgtaagcaaagaaaaaat
aatgggAAAGAAGAGTGGTGCTCCTTGTACTGCAATTGGGTgtaggaaaa
gaaaaaacaacaagactCAAGATCTCAGAAGTGACAGTGAAGGGTCTTCG
GACGAAGAGAGCagagaaaaaagaaagtatCCAAGAACTTTTCACTCGTA
AGTAATTTAACTTAGGTCTTCCTTCTTTCTCAGTCTTTTGCTTGACAAAG
GATAAATATAGGATTGGTCAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_128:186858..187280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047464 ID=TCONS_00047464|Name=TCONS_00047464|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at scaffold_128:186858..187280 (Clytia hemisphaerica)
CTCTGACCAATCCTATATTTATCCTTTGTCAAGCAAAAGACTGAGAAAGA
AGGAAGACCTAAGTTAAATTACTTACGAGTGAAAAGTTCTTGGatacttt
cttttttctctGCTCTCTTCGTCCGAAGACCCTTCACTGTCACTTCTGAG
ATCTTGagtcttgttgttttttcttttcctacACCCAATTGCAGTACAAG
GAGCACCACTCTTCTTTcccattattttttctttgcttacaATTGCTtga
ctttcgttttcgtttcaagtttgttttggtttttggtttgttttgatttt
tttttggtttgtttacaaaaatgctATCCCCATACCTCCGCGCTACTAag
caaaaatgtaaacaaagggGTCCCAAAGATGGCGGATGTTCGAAAATTTC
CCGGCTTCAAAAAAGGCCCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030232XLOC_030232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047464-exon-scaffold_128-1491911889:186858..187280TCONS_00047464-exon-scaffold_128-1491911889:186858..187280Clytia hemisphaericaexon
TCONS_00047464-exon-scaffold_128-1510915933:186858..187280TCONS_00047464-exon-scaffold_128-1510915933:186858..187280Clytia hemisphaericaexon
TCONS_00047464-exon-scaffold_128-1575043694:186858..187280TCONS_00047464-exon-scaffold_128-1575043694:186858..187280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:186858..187280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165784	0.323331	0	0.183644	0.894275	0.176667	0.426283	0.19954	0.139703	0.692178	0	0.331233	0.771803	0	0.188275	0.202048	0.871173	0.510243	0	0.184414	0.801446	0.23455	0.190084	0	0.177995	0.476568	0	0.242605	0.368014	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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