TCONS_00047453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047453
Unique NameTCONS_00047453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047453 ID=TCONS_00047453|Name=TCONS_00047453|organism=Clytia hemisphaerica|type=transcript|length=505bp
AGCAGTTTTTGAGGTTACGGATGGATTGTGGGAGGGCATTAAATAGTCTG
GGACCTTCTTCTGACAGGGAGTCTCTCCATATGTTTTTTTGCCTTATGTT
CACTTTTTTTAGATAACATTTTCTACCCAGTCTCTGGTTATTGTAACTGA
AGATGCCACCTTTGTTTTCagcatagttaaaatttggtacAAGCTGTTCT
AGGATGCTCCAGGTGTAGATAATCCTGTATCTTTCTCTGCGCCGCTCCAG
GCTGTATAGTTTAAGTTCtttgagcttctcccaataGTTGAGATGTTGAA
GTGTAGGGATTCTATTTAGGTAAGATTTTTGAAGTGATTCCAGTTGTTGG
ATCAGATATCTTTTTGAAGGTGACCACAGCTGGGAGCAATAGTCAATGAA
TGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTACTTGACAATCTCTTG
TTTTGAACGTTCGATGGATCCAAGCAATGATACTTTTGACTTTCTCGATC
TGGTT
Run BLAST on NCBI

protein sequence of TCONS_00047453-protein

>TCONS_00047453-protein ID=TCONS_00047453-protein|Name=TCONS_00047453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
NQIEKVKSIIAWIHRTFKTRDCQVMLTLWKSLVLPFIDYCSQLWSPSKRY
LIQQLESLQKSYLNRIPTLQHLNYWEKLKELKLYSLERRRERYRIIYTWS
ILEQLVPNFNYAENKGGIFSYNNQRLGRKCYLKKVNIRQKNIWRDSLSEE
GPRLFNALPQSIRNLKNC
Run BLAST on NCBI

transcript from alignment at scaffold_128:60945..61449

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047453 ID=TCONS_00047453|Name=TCONS_00047453|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_128:60945..61449 (Clytia hemisphaerica)
AACCAGATCGAGAAAGTCAAAAGTATCATTGCTTGGATCCATCGAACGTT
CAAAACAAGAGATTGTCAAGTAATGCTAACTCTTTGGAAGTCACTGGTAC
TACCATTCATTGACTATTGCTCCCAGCTGTGGTCACCTTCAAAAAGATAT
CTGATCCAACAACTGGAATCACTTCAAAAATCTTACCTAAATAGAATCCC
TACACTTCAACATCTCAACtattgggagaagctcaaaGAACTTAAACTAT
ACAGCCTGGAGCGGCGCAGAGAAAGATACAGGATTATCTACACCTGGAGC
ATCCTAGAACAGCTTgtaccaaattttaactatgctGAAAACAAAGGTGG
CATCTTCAGTTACAATAACCAGAGACTGGGTAGAAAATGTTATCTAAAAA
AAGTGAACATAAGGCAAAAAAACATATGGAGAGACTCCCTGTCAGAAGAA
GGTCCCAGACTATTTAATGCCCTCCCACAATCCATCCGTAACCTCAAAAA
CTGCT

Coding sequence (CDS) from alignment at scaffold_128:60945..61449

>TCONS_00047453 ID=TCONS_00047453|Name=TCONS_00047453|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_128:60945..61449 (Clytia hemisphaerica)
AACCAGATCGAGAAAGTCAAAAGTATCATTGCTTGGATCCATCGAACGTT
CAAAACAAGAGATTGTCAAGTAATGCTAACTCTTTGGAAGTCACTGGTAC
TACCATTCATTGACTATTGCTCCCAGCTGTGGTCACCTTCAAAAAGATAT
CTGATCCAACAACTGGAATCACTTCAAAAATCTTACCTAAATAGAATCCC
TACACTTCAACATCTCAACtattgggagaagctcaaaGAACTTAAACTAT
ACAGCCTGGAGCGGCGCAGAGAAAGATACAGGATTATCTACACCTGGAGC
ATCCTAGAACAGCTTgtaccaaattttaactatgctGAAAACAAAGGTGG
CATCTTCAGTTACAATAACCAGAGACTGGGTAGAAAATGTTATCTAAAAA
AAGTGAACATAAGGCAAAAAAACATATGGAGAGACTCCCTGTCAGAAGAA
GGTCCCAGACTATTTAATGCCCTCCCACAATCCATCCGTAACCTCAAAAA
CTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030221XLOC_030221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047453-exon-scaffold_128-1491911889:60945..61449TCONS_00047453-exon-scaffold_128-1491911889:60945..61449Clytia hemisphaericaexon
TCONS_00047453-exon-scaffold_128-1510915933:60945..61449TCONS_00047453-exon-scaffold_128-1510915933:60945..61449Clytia hemisphaericaexon
TCONS_00047453-exon-scaffold_128-1575043694:60945..61449TCONS_00047453-exon-scaffold_128-1575043694:60945..61449Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047453-proteinTCONS_00047453-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:60945..61449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.37639	7.28901	14.7081	12.6946	11.3862	9.05125	9.25786	11.049	6.39901	9.43321	10.5917	8.22669	8.9448	9.58337	3.40531	3.56222	2.94149	3.88951	2.88235	4.0286	3.7541	3.81847	0.991062	3.21849	10.8604	11.898	3.45033	2.47496	2.10443	4.63689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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