TCONS_00047446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047446
Unique NameTCONS_00047446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047446 ID=TCONS_00047446|Name=TCONS_00047446|organism=Clytia hemisphaerica|type=transcript|length=1043bp
cttatttttctcaagaatatcagtaaaatcaacaattcattttttttcat
atcgAATTTCATTAGGAAAATGGTATTGTGtcaaatttgaggaaaagtgg
GAGTAATAAAAGTAGATTACGAACCATTATAAGGAACATTGAAAGAACGA
TCACGTCTCGGTAAAAAGATAAGAAAGAAGAAATGCCTACAGctaatttt
gcaattttcattttagcaACAATCTTATCACACAAGCACAACGGATGCAA
CGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGTGTCATCAATG
GTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACAAATCAAACGG
ACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGATTCATCCGAT
GTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGAGTACCGTTTC
ATTATCAAATCACACTTGGGAAACATGACCTACAAACGAAGGGACCAAAC
GAACAAATTTTGATGGGAAGTGAATTGAAGATCCATCCAATGTTCAATAG
ACGTACATATGATAACGATATCGCACTCATCAAATTGAATAAACCAGCTG
TTTTAACTGATAAAGTAAATATTGCGTGTATTCCACCGAACGCTGTTTCT
CCGAAACCAGTTCTCGCAGGTCGAAACTGTTTTGTATCAGGCTGGGGATT
GAAGTCATCGACATTGGCAACAAGATATTTACTTCATGGAGATGTTCCTA
TCATCACAAATGCTGAATGTGCAAAAAAAATGAATCAAGTCAATTTAAAT
GGTGGAGTGACTGACAATATGTTATGTGCAGGTGGAGATGGAAAAGCTAG
TTGCCATGGCGACAGCGGCGGGCCGTTGGTTTGCAGTGAAAGTGACGGTC
GTTTTGTTGTACAAGGGGTGGTCAGCTGGGGCCATCCACAATGTGCGGAT
GGTTACTATGGTGTTTTTGCACGTGTTGaccaatatggcggatggataAG
CTCAATTTTATATCCTGATAAATATTAAGAGATCGGTAAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_128:44158..50323-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047446 ID=TCONS_00047446|Name=TCONS_00047446|organism=Clytia hemisphaerica|type=transcript|length=6166bp|location=Sequence derived from alignment at scaffold_128:44158..50323- (Clytia hemisphaerica)
CTTATTTTTCTCAAGAATATCAGTAAAATCAACAATTCATTTTTTTTCAT ATCGAATTTCATTAGGAAAATGGTATTGTGTCAAATTTGAGGAAAAGTGG GAGTAATAAAAGTAGATTACGAACCATTATAAGGAACATTGAAAGAACGA TCACGTCTCGGTAAAAAGATAAGAAAGAAGAAATGCCTACAGCTAATTTT GCAATTTTCATTTTAGCAAGTAAGTGTTCGTTGTTAAATCTTAAATTACT GCACTGAATACACTCTTCTAGAGATGCATAAATTTATTGANGTATTTTAT CAGTTTTCTTAACTGCATATCAAATCACTCTACAGCAATCTTATCACACA AGCACAACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCCAA TCACGTGTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGGCA AGCACAAATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGGTA CGTTGATTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGGAC TATAGAGTACCGTTTCATTATCAAATCACACTTGGGAAACATGACCTACA AACGTAAGTATACACCTTTTTTTTATTAAAACATCAACAATTTTTGAAGC CTTTGGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAATGTTCTTAAGC TTAACATGTTTTTATTTTCGCCATTTTTATAGTATTTTTGTCCATTTTCT TAAGAAATCGAGTGTTTTAGAGTCTTAAAATGTTCTAAACATGCTTTTAA CACTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAA AAACGTGTACTGTATTGTATAATTTATACGACAAGCGTGCACAACTTATT TTCATCCCATTACTCCAAATTTCGTAATATATTCAAGAGAAATTGTATTT AGACTGATAAGTTATGGCGAGCGGAATTAGTTTTCTAAGAAGGCTTGTGT GTGTCTCGTAATCTGATCTAGACTACTGCTATCTCCTAACGGGTTCGTGT TTTTTAAAATACCTGCACGAAGAGCGAGGTCAGCAATTTACAACTTAAGT ATTAACCTTAACCCCTCAAAAACAACAGTACAATCATGGTCAAAATATAT TGACATTTTAGTGTATTTTAACGTTTTTCTGAATAAAAAGTAAAAAGAAT AAAAAGTTCGGGCGAGAATTGCTATTTTAGCACTTCCATTTTCTTCCATT GAATATTTCGATTTAAGAGGGGTTCGGTGGCTTCTACGCTATATTCCAAG AAGTCTTATTCGAGCAAATTTGAGCTTTTAAATCCTGAGATCCTAAGATC CTAAGTTTTAAGTCTCATGTTAAAACTCAGAGTTAAAACTCTACTTTCCA GATGTAGTTTAACGCGCTTAAAATCATTTGTGGTGTTATTTAAAATTTCG CCGGGAAATCCCTTTTGTCTCAAATATTTTGTCCATGATTGTAGTATATA GTAACAGTTTGAAAAGAGTACGAATCCGCGTTTGAGAATACCNAAACAAC ACAATTATCATTGTGAATATGTAATTTTATAGCAATGAAATCTGTTTGAA AACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTGTATTCTCATT TAAAAAAGTGCATTACAGCACCCGTTCCCTTCGTGTTACCGGCTTTTTGT TGCTTATTGAGCGCCAGGGATGATTCTCTGACGTCCATCAGTTACGAAAA TAATGCCTAAGATATACAGGGCAGGACGAGGTTCGGAGAAAGAAATGATT AGGTCGGGGTTTGAGTCATTCTCTGGTGTTTAGAAAGCGATTGAAAATTA GATCTTTAAGAGATTATAAAGAATGAAAGAACTAATTTCACTTAATCGAA TCAAGTAGAGGAGTAGTCAAAAAATGCTCGCCTGAAAATTAATAGGTCGC GGTAGGTTTAACATTAAAATTAAATTGTATTTTATCAGTTTTCTTAACTG CATATCAAATCACTCTACAGCAATCTTATCACACAAGCACAACGGATGCA ACGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGTGTCATCAAT GGTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACAAATCAAACG GACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGATTCATCCGA TGTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGAGTACCGTTT CATTATCAAATCACACTTGGGAAACATGACCTACAAACGTAAGTATACAC CTTTTTTTTATTAAAACATCAACAATTTTTGAAGCCTTTGGATGTTCTTA ACTTTTTGAGTTTTAAGCCTAAAATGTTCTTAAGCTTAACATGTTTTTAT TTTCGCCATTTTTATAGTATTTTTGTCCATTTTCTTAAGAAATCGAGTGT TTTAGAGTCTTAAAATGTTCTAAACATGCTTTTAACACTTTGGCCATCGA AGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAACGTGTACTGTAT TGTATAATTTATACGACAAGCGTGCACAACTTATTTTCATCCCATTACTC CAAATTTCGTAATATATTCAAGAGAAATTGTATTTAGACTGATAAGTTAT GGCGAGCGGAATTAGTTTTCTAAGAAGGCTTGTGTGTGTCTCGTAATCTG ATCTAGACTACTGCTATCTCCTAACGGGTTCGTGTTTTTTAAAATACCTG CACGAAGAGCGAGGTCAGCAATTTACAACTTAAGTATTAACCTTAACCCC TCAAAAACAACAGTACAATCATGGTCAAAATATATTGACATTTTAGTGTA TTTTAACGTTTTTCTGAATAAAAAGTAAAAAGAATAAAAAGTTCGGGCGA GAATTGCTATTTTAGCACTTCCATTTTCTTCCATTGAATATTTCGATTTA AGAGGGGTTCGGTGGCTTCTACGCTATATTCCAAGAAGTCTTATTCGAGC AAATTTGAGCTTTTAAATCCTGAGATCCTAAGATCCTAAGTTTTAAGTCT CATGTTAAAACTCAGAGTTAAAACTCTACTTTCCAGATGTAGTTTAACGC GCTTAAAATCATTTGTGGTGTTATTTAAAATTTCGCCGGGAAATCCCTTT TGTCTCAAATATTTTGTCCATGATTGTAGTATATAGTAACAGTTTGAAAA GAGTACGAATCCGCGTTTGAGAATACCAGCAACAAGTCTCAATCACCTAG ACCTATCGAACTGGAGTGTACACGTTGTTTGACTTTCGACCTTTGAATGA TCCCCTGCTAAGGGGACTAAAAGAATGGAAAATGAGAAAATATTGTGAAA TTTAAGACCCTTGATAGGACTAATTTTGACTAGTAATTTGATCAAATTCC AATCAGTTGAAATTTCCCTGTTTTTTCGACTTTTTGGAACTGAGATTTAA TTTCAGACTTTTCAAACCCTTTTCAATTAGGGACCAGGTTATAAAAAGGT ACCCAAGGGTCAGCACATACCCGTGGCTTTCACTTGCCAGGCAAACATAA CCTCTACTATTGTATTTTTAGGAAGGGACCAAACGAACAAATTTTGATGG GAAGTGAATTGAAGATCCATCCAATGTTCAATAGACGTACATATGATAAC GATATCGCACTCATCAAATTGAATAAACCAGCTGTTTTAACTGATAAAGT AAATATTGCGTGTATTCCACCGAACGCTGTTTCTCCGAAACCAGTTCTCG CAGGTATACATTGTGCTCTCGTTTATTCGAACGTTTCAACATCTATTAAC CGAACTTTCTATAATTCAAAGTAACTGTCGGACTCCGTCAATAGTAGACT AGTGAAACCACGTCGTTGTATTTCGCCGCAGCTTACTTCCACGCAGTAAC ACGCAATCCCGGTACAAGCGTTCTTCCCAAGCCTTAGAAAGCAAGAGATA ATCCACATTTTCACAAGCATAAAATAGTATAACTAGATCAATTATTACAT TACAATAGTAAAATTATTTGCTTTCTCTCACCGTAGGTCGAAACTGTTTT GTATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACAAGATATTTACT TCATGGAGATGTTCCTATCATCACAAATGCTGAATGTGCAAAAAGTGAGA TTTTCGTTTAGATTCTTTAAAACCAATCTTCCTCACCTACAAGGCGAATA TTTAACGAAATCTTCTAGATATCTTTCAAGATTCGTCTACAAAAATAGTT TTTGATAAAGATTGATTGAATGAAGCTTTGTTCACTTAGAACGGAGAGAC TTTTCAACTACAGCATACCTATGAATAAATATACTGAGCCTGCCATCTTC ATACAGACATCCCATCACAGATCAGGTGGAATTTTATCAGCCCACGTATC ACCCACTGGGGATAAAAATAATGGACCAAAACACGATGGGGATTGATATT CCCATGTTTTTTTATAGCTGGGGATTTGAACTCTATTTTGTTTTCTAGCC AGAAAATTCAGTGAAGATGGAAAAAATAGCACAATATTTTGCAGTGGGTA TTTGCTTATCTGGTTATTTTCAGTGGGAAAAAAAATTAGAGTATATTTTG CACCGGGACGATATTTTGGCCAATTTTTCCAGTGGGAAGGGTTCCCAGAT ACAGATAACACGTGCCCTAAAACATCAAATACGTTTTATCCCTAAAACAT CAAATACGTTTTATCTATAGGAAATTATGTGACGTGTCTCACGGTTTTCT TCATAAGTATCTATAAGCGACACTCACGCGAAGTCTTGTGTATAGCCCCA TTCTTGCCTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGT TTAAAATGTGTTTTCTGATTGATGTAACCAACAAAACTATGGCATGTTAT ACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCGT CTCGAAATCTTCAAAATAGTGGTTTTTCATCAATTTTTCATCTGGATTTT GCTTAAAAAAACAGTCATAACTTTTGACACATCATTTTAGAAAAATTTAA AATAGTTCAATTCTTTGCGGACAGTGTAAAGAAATTTTAAAACAAAAAGG TTAATTACCCATTAAAACTTAGCACTTTTTATAAAATAAGGTGATGCAAC ATATTATTAACGTCTTTTTAAAGTTCATAACGTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNATTTATAAAGGCAATTCTTTGTTAAAAG TGTTAAAGAACCTAAAACATAACTTTTATGTTCAAATACTAAAATCAATT TTCCGACTATGGTCAGAGCCCTTAAACATCACAAATATATTCCTTTTTAG AAATGAATCAAGTCAATTTAAATGGTGGAGTGACTGACAATATGTTATGT GCAGGTGGAGATGGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTT GGTTTGCAGTGAAAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCT GGGGCCATCCACAATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTT GACCAATATGGCGGATGGATAAGCTCAATTTTATATCCTGATAAATATTA AGAGATCGGTAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030214XLOC_030214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047446-exon-scaffold_128-1575043694:50105..50323TCONS_00047446-exon-scaffold_128-1575043694:50105..50323Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1575043694:48036..48303TCONS_00047446-exon-scaffold_128-1575043694:48036..48303Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1575043694:46571..46752TCONS_00047446-exon-scaffold_128-1575043694:46571..46752Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1575043694:46180..46287TCONS_00047446-exon-scaffold_128-1575043694:46180..46287Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1575043694:44158..44423TCONS_00047446-exon-scaffold_128-1575043694:44158..44423Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1510915933:50105..50323TCONS_00047446-exon-scaffold_128-1510915933:50105..50323Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1510915933:48036..48303TCONS_00047446-exon-scaffold_128-1510915933:48036..48303Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1510915933:46571..46752TCONS_00047446-exon-scaffold_128-1510915933:46571..46752Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1510915933:46180..46287TCONS_00047446-exon-scaffold_128-1510915933:46180..46287Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1510915933:44158..44423TCONS_00047446-exon-scaffold_128-1510915933:44158..44423Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1491911889:50105..50323TCONS_00047446-exon-scaffold_128-1491911889:50105..50323Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1491911889:48036..48303TCONS_00047446-exon-scaffold_128-1491911889:48036..48303Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1491911889:46571..46752TCONS_00047446-exon-scaffold_128-1491911889:46571..46752Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1491911889:46180..46287TCONS_00047446-exon-scaffold_128-1491911889:46180..46287Clytia hemisphaericaexon
TCONS_00047446-exon-scaffold_128-1491911889:44158..44423TCONS_00047446-exon-scaffold_128-1491911889:44158..44423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:44158..50323 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.023561 0.200783 0.135996 0.164073 0.0768015 0.0179235 0.244213 0.107745 0.0708273 8.67135 8.68209 5.1209 7.9322 2.18748 2.78217 31.6767 29.4092 10.7965 10.4119 6.70652 9.00168 25.5081 25.048 0.0874947 0.0311256 1.58171 1.77988
Blast
BLAST of TCONS_00047446 vs. Swiss-Prot (Human)
Match: PLMN (Plasminogen OS=Homo sapiens GN=PLG PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.273e-46
Identity = 103/244 (42.21%), Postives = 131/244 (53.69%), Query Frame = 3
Query:  288 RVINGVTSQEGQWPWQAQIKRTVFGEQHHCGGTLIHPMYVLTAAHCLMDYRVPFHYQITLGKHDLQTKGPNEQILMGSELKIHPMFNRRTYDNDIALIKLNKPAVLTDKVNIACIPPNAVSPKPVLAGR-NCFVSGWGLKSSTLATRYLLHGDVPIITNAECAKKMNQVNLNGGVTDNMLCAG--GDGKASCHGDSGGPLVCSESDGRFVVQGVVSWGHPQCADGYYGVFARVDQYGGWISSIL 1010
            RV+ G  +    WPWQ  + RT FG  H CGGTLI P +VLTAAHCL     P  Y++ LG H      P+ Q +  S L + P         DIAL+KL+ PAV+TDKV  AC+P    SP  V+A R  CF++GWG    T     L    +P+I N  C +      LNG V    LCAG    G  SC GDSGGPLVC E D ++++QGV SWG         GV+ RV ++  WI  ++
Sbjct:  580 RVVGGCVAHPHSWPWQVSL-RTRFG-MHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLP----SPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYE---FLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 807          
The following BLAST results are available for this feature:
BLAST of TCONS_00047446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLMN3.273e-4642.21Plasminogen OS=Homo sapiens GN=PLG PE=1 SV=2[more]
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