|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047421 ID=TCONS_00047421|Name=TCONS_00047421|organism=Clytia hemisphaerica|type=transcript|length=1051bp
TTGGAGACATCACTTTGATCTGCAACCACTTACGCAAGGTAGGATGACGA
AATTAGGAAAGAATGTTATGTTTGTTTACAGATGAAGTTGATGATGATGC
CAGCAGTTTGAAATGTATGGTGTACGAGGAATGAGATTTCTCATGAATTT
GTTTGGGGATTGATGATAATTTCTTTTCGTTGACAAGTACGCGAGGGGTG
CGTGACACAACAACTTTAgtatgtttttgaatttttgcttAGTCGTAGgg
ataaattttgaattttttttgaacgaAAAGAATTTCTCGTGTCTTTTTAT
CTTGTTTGATtaagtttttcaatatttaaattaCCTCAGCCTAACTCAAA
CGGCACTAGAATAAGATCAGGCTGTAAATGTATGCAGAATTTTCTTTTGC
CTTACTTGTAGAACTGTAAAATTTTCTGAGTTACGGTACGGGCTAACTGC
TCACTCGATAACAAAGGCAGTTATAATATACAGGgctttcatgtagtttt
ttacGCAAATCGAGCGTTTGCTTAATATTTTGATACCTTTCCATTTTTGA
GGTAAAATATTTTGACGGCCTTTGGAAAATAGTCACAAGTCAACCAGAAT
TTCGGAAAGTTTGCAATTCTACGTTACGTCTATTGTTAGGGTTATTTGCA
CCAACGATGAATTTGATGTAGCTTTTCTTGTTTCATATTGTTTGTATTTa
acttattatttatttttatactttctttttcttagtTCACTTTCACCCGT
ATACCTTTTGCCAAAATTCACCATAATTCAATTGACGCGAATCGGGGAGG
GAGCTTTTTTTTAAGGTCATGTAAGTGTGAGGTCACATAATCATTCAACC
CATTGCCTTGTGCTGTACAAGGttgttacatgttttttttttataagcat
acaaaaatccgaaaacaggctcagagatgcttaggtcaaAAGCTTAATAA
GAAAAATGCTtaaggggatgcttaaatctaaagcataaatttagggaaat
actgaaaatccgtaaaattccagccaaaaaaagccaaaatcaggaaaaaa
a Run BLAST on NCBI transcript from alignment at scaffold_127:182356..183406 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047421 ID=TCONS_00047421|Name=TCONS_00047421|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_127:182356..183406 (Clytia hemisphaerica)
tttttttcctgattttggctttttttggctggaattttacggattttcag
tatttccctaaatttatgctttagatttaagcatccccttaAGCATTTTT
CTTATTAAGCTTttgacctaagcatctctgagcctgttttcggatttttg
tatgcttataaaaaaaaaacatgtaacaaCCTTGTACAGCACAAGGCAAT
GGGTTGAATGATTATGTGACCTCACACTTACATGACCTTAAAAAAAAGCT
CCCTCCCCGATTCGCGTCAATTGAATTATGGTGAATTTTGGCAAAAGGTA
TACGGGTGAAAGTGAactaagaaaaagaaagtataaaaataaataataag
ttAAATACAAACAATATGAAACAAGAAAAGCTACATCAAATTCATCGTTG
GTGCAAATAACCCTAACAATAGACGTAACGTAGAATTGCAAACTTTCCGA
AATTCTGGTTGACTTGTGACTATTTTCCAAAGGCCGTCAAAATATTTTAC
CTCAAAAATGGAAAGGTATCAAAATATTAAGCAAACGCTCGATTTGCgta
aaaaactacatgaaagcCCTGTATATTATAACTGCCTTTGTTATCGAGTG
AGCAGTTAGCCCGTACCGTAACTCAGAAAATTTTACAGTTCTACAAGTAA
GGCAAAAGAAAATTCTGCATACATTTACAGCCTGATCTTATTCTAGTGCC
GTTTGAGTTAGGCTGAGGtaatttaaatattgaaaaacttaATCAAACAA
GATAAAAAGACACGAGAAATTCTTTtcgttcaaaaaaaattcaaaattta
tccCTACGACTaagcaaaaattcaaaaacatacTAAAGTTGTTGTGTCAC
GCACCCCTCGCGTACTTGTCAACGAAAAGAAATTATCATCAATCCCCAAA
CAAATTCATGAGAAATCTCATTCCTCGTACACCATACATTTCAAACTGCT
GGCATCATCATCAACTTCATCTGTAAACAAACATAACATTCTTTCCTAAT
TTCGTCATCCTACCTTGCGTAAGTGGTTGCAGATCAAAGTGATGTCTCCA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047421-exon-scaffold_127-1491911889:182356..183406 | TCONS_00047421-exon-scaffold_127-1491911889:182356..183406 | Clytia hemisphaerica | exon |
| TCONS_00047421-exon-scaffold_127-1510915933:182356..183406 | TCONS_00047421-exon-scaffold_127-1510915933:182356..183406 | Clytia hemisphaerica | exon |
| TCONS_00047421-exon-scaffold_127-1575043694:182356..183406 | TCONS_00047421-exon-scaffold_127-1575043694:182356..183406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:182356..183406 . |
Blast
The following BLAST results are available for this feature:
|
