TCONS_00047406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047406
Unique NameTCONS_00047406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047406 ID=TCONS_00047406|Name=TCONS_00047406|organism=Clytia hemisphaerica|type=transcript|length=366bp
CGACAACATTGTTTAAGGGGGGAGTTGAATGCTCATTTTTGTGCTTTGTG
TCATAGGTTttgtcaatgattgtagttGGAATAGTTAAAAAGCGACGAAC
CTGCTAGCCATCTCCGATTGTCGTCGATGTTCTCGTATCACGAATCGGAA
ATATTTGGATTTGAAGATCATGTATTGAGTCAGTGCAACAATGAAACATA
TGGTGTCCATGACCAACCCTGGGTCATTCTCGGTGACACATTCAGAGTTG
ATGTTTGATGGGATGTCGTAAGCCTCTGGATGGATGCAATATAGGTTGAG
TAGTTGAATGATAAAACAGTTCGTTTCGTCGAAGATTGCATTGATATAAA
CACACGAAACCAACTG
Run BLAST on NCBI

transcript from alignment at scaffold_127:136866..137355-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047406 ID=TCONS_00047406|Name=TCONS_00047406|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at scaffold_127:136866..137355- (Clytia hemisphaerica)
CGACAACATTGTTTAAGGGGGGAGTTGAATGCTCATTTTTGTGCTTTGTG
TCATAGGTTTTGTCAATGATTGTAGTTGGAATAGTTAAAAAGCGACGAAC
CTGCTAGCCATCTCCGATTGTCGTCGATGTTCTCGTATCACGAATCGGAA
ATATTTGGATTTGAAGATCATGTATTGAGTCAGTGCAACAATGAAACATA
CGGTGTCCATGACCAGACCTGGGTCATTCTCGGTGACACATTCAGAGTTG
ATGTTTGATGGGATGTCGTAAGCCTCTGGATGGATGCAATATAGGTTGAG
TANCTAGTGCAACAATGAAACATATGGTGTCCATGACCAACCCTGGGTCA
TTCTCGGTGACACATTCAGAGTTGATGTTTGATGGGATGTCGTAAGCCTC
TGGATGGATGCAATATAGGTTGAGTAGTTGAATGATAAAACAGTTCGTTT
CGTCGAAGATTGCATTGATATAAACACACGAAACCAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030191XLOC_030191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047406-exon-scaffold_127-1575043694:137159..137355TCONS_00047406-exon-scaffold_127-1575043694:137159..137355Clytia hemisphaericaexon
TCONS_00047406-exon-scaffold_127-1575043694:136866..137034TCONS_00047406-exon-scaffold_127-1575043694:136866..137034Clytia hemisphaericaexon
TCONS_00047406-exon-scaffold_127-1510915933:137159..137355TCONS_00047406-exon-scaffold_127-1510915933:137159..137355Clytia hemisphaericaexon
TCONS_00047406-exon-scaffold_127-1510915933:136866..137034TCONS_00047406-exon-scaffold_127-1510915933:136866..137034Clytia hemisphaericaexon
TCONS_00047406-exon-scaffold_127-1491911889:137159..137355TCONS_00047406-exon-scaffold_127-1491911889:137159..137355Clytia hemisphaericaexon
TCONS_00047406-exon-scaffold_127-1491911889:136866..137034TCONS_00047406-exon-scaffold_127-1491911889:136866..137034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:136866..137355 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0414	1.04396	0.58921	1.14831	0	0.286386	0.387876	0	1.11037	1.36717	5.84522	1.19513	3.78313	4.60578	4.39455	4.87944	3.26969	3.36469	1.56459	1.55526	0.552486	1.18988	0.821319	1.04089	0	0.489869	0.800748	0	0.981693	0.369957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top