|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047403 ID=TCONS_00047403|Name=TCONS_00047403|organism=Clytia hemisphaerica|type=transcript|length=3417bpRun BLAST on NCBI transcript from alignment at scaffold_127:43332..54521- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047403 ID=TCONS_00047403|Name=TCONS_00047403|organism=Clytia hemisphaerica|type=transcript|length=11190bp|location=Sequence derived from alignment at scaffold_127:43332..54521- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047403 vs. Swiss-Prot (Human)
Match: ERAP1 (Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3) HSP 1 Score: 254.218 bits (648), Expect = 2.793e-70 Identity = 222/932 (23.82%), Postives = 416/932 (44.64%), Query Frame = 3
Query: 543 DSTKGMYNEFRLPNDLLPLHYILYMYPNLENMQYSGLVKIRFECKSKTDKIILHSAHHNFTKIAIKTINVTDI--EDILVAKSQRNLHKEMLILTLNQELVSGYSYDVYIGFHGEINKYYTNGLYSSINNGKR-----VVSTMFRPTFARRTFPCFDEPQFKTPFKLIIQHNSSLNAVSNMAEMEHIKLEDSENVECHFKESQPISTNQLSFVVSEMKFTEKTTKSGIKVRVFS--DEINNRNADFALNTTIKMLEYYGNKIQYSYPNSKLDLVPMESIPLDATSNYALIELYEPLLLFDVKTGTLFQQEKIIRTLANAIASQWFGGIISQNWWDEVYLFEGFSAFYSTKLLEDLYKDWKFDETYLYNEFQEGLRADASRYAKILAETSLDSGDYQLQAPSVA-QKSEAIVRMMSEVVGEKGFIQTVKNIFQQMQFSVVTLTTLGNTFVTFVPS--------------------------VDVVDFLHFWTSQKGFPIVTTKISDTQTQLLVVQNKFDYVKQTKW---TLWRFQIPTEFSCS-SKGVEKYVTEAHNGKKPEFFGLPASCITADKGKKFLDNNTYKCDAGGRGFFRVDYEKGDWKNLQHILKNDMKKLQPLDRADLISDLFEFSMYNYRSIGDAMLFTEYLDKETDYAPLYAGISKLQYLNDIIEDQTLKRCLKEYTSSKISSTYERTKNQNMT---SVEDKHI--EHLVIDYITNKENKLSESLIREYEIQFLKWLLSGERNLLSNYMRDVIVKVGLKYGSNYELDDVITYYRKSEDAVEKGLLLEAIGRTQKQHELL-----SSEDNVLSSEEQLKLITYSCSSYVAQSSTDY--GYKHLNKNWDKVIDLIRVSPNAVRDFMWSCFGKYSNRYDLEKFKSLFAG-KELGALSNVYKRVEEQIQHNIHFVQNQSGELRKFFQ 3179
D T +N+ RLP ++P+HY L ++ NL + + G K+ T IILHS H ++ ++ + E + V + R +E + L + L+ G Y V I + G +++ + +G Y S K + ST F PT AR FPCFDEP FK F + I+ A+SNM ++ + + + +E HF + +ST ++F++S+ + K TKSG+KV V++ D+IN AD+AL+ + +LE+Y + YP K DL + A N+ L E LLFD + + + I T+A+ +A QWFG +++ WW++++L EGF+ F + + + K + Y + + + + DA + ++ + + V+ K I+ M+ E + F + Q+ + L ++ + P+ VDV ++ WT QKGFP++T + + + Y+K + T + + +P F S S V +++ + K + LP K + G G++ V YE W +L +LK + DRA LI++ F+ SI A+ + YL ET+ P++ G+++L + ++E + + ++ + I + Q T SV ++ + + L++ + N + ++ E F KW S L + + VG + + D + + Y+ S + EK + A+ RTQ + +L S + + + ++E +++T + ++ Y ++ L KNW+K++ + +++ + ++S R LE+ K F+ KE G+ ++ E I+ NI ++ ++R + Q
Sbjct: 43 DGTPFPWNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLEHPR---QEQIALLAPEPLLVGLPYTVVIHYAGNLSETF-HGFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGL-IEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQ--ADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGD-YFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHM----KQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKT----KTDVLILPEEV------------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNY-----QPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGW--DFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILT-----LIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQ 934 The following BLAST results are available for this feature:
BLAST of TCONS_00047403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.