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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047378 ID=TCONS_00047378|Name=TCONS_00047378|organism=Clytia hemisphaerica|type=transcript|length=2049bpRun BLAST on NCBI transcript from alignment at scaffold_127:66519..75514+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047378 ID=TCONS_00047378|Name=TCONS_00047378|organism=Clytia hemisphaerica|type=transcript|length=8996bp|location=Sequence derived from alignment at scaffold_127:66519..75514+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047378 vs. Swiss-Prot (Human)
Match: DCA11 (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.264e-127 Identity = 121/227 (53.30%), Postives = 163/227 (71.81%), Query Frame = 2
Query: 845 KEDVNSVAFADDSSNILISGSDDGLCKVWDRRALNEQTPEPVGIFAGHVNGITYVSSKNDGVHFISNSKDQSIKLWDIRHFSSEETVREARSIVANQSWDYRWPAAPRRSQRLKKSPGKDAVMTYRGHRVLHTLLRAKFSPIFTTGQKYIYAGCASGNVVIYDVLTGEIVEKLKGVHNQCVRDVSWHPYQNTIMSSSWDFSIGRWDFHRTDVQEQKDNDDEESTTLP 1525
++DVN+VAFAD SS IL SG DD +CKVWDRR + E P+PVG AGH +GIT++ SK D + ISNSKDQ+IKLWDIR FSS E + +R Q+WDYRW P+++ R K PG ++MTYRGH VLHTL+R +FSPI +TGQ++IY+GC++G VV+YD+L+G IV+KL H CVRDVSWHP++ I+SSSWD ++ W + + + + + EE + P
Sbjct: 307 EDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTN-HKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAP 532 HSP 2 Score: 209.534 bits (532), Expect = 1.264e-127 Identity = 103/263 (39.16%), Postives = 157/263 (59.70%), Query Frame = 3
Query: 69 DLGEIISFLLVSGQVRLVRSSGIGAFEVDMPAFGFGGDSSDDETGHLNTAPLSPRGDTAPDTSNIEKSRLK---NILLNETGYNYQYPKNITNRILKRQHGALLGRDSFNSADRLQIYSKFLPNKCDIVEKFRSKVFCGTYSNDGSVFMSACQDQHIRLYDTTNDNFKLFRDIKAKDVGWSVVDTAYSPDQNYIIYSSWSEFIHLCNVYGDHETHLALDLRPDTTQFCAFSVSFSHDSKEIVAGGSDCGLYIYERGCDQRILK 848
DL +++++LL GQVRLV+ G + ++ G L +P D PDT +E + +K + + G K+ R+L ++ L R SF+ ++ ++ S FLPN + + K FCG YS DG +FMSACQDQ IRLYD F+ F+ IKA+DVGWSV+D A++PD N+ +YSSWS++IH+CN+YG+ +TH ALDLRPD +F FS++ S D +E++ G +D LY+++R ++R L+
Sbjct: 41 DLAQVLAYLLRRGQVRLVQGGGAANLQFIQALLDSEEENDRAWDGRLGDR-YNPPVDATPDTRELEFNEIKTQVELATGQLGLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302 The following BLAST results are available for this feature:
BLAST of TCONS_00047378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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