TCONS_00047357 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047357
Unique Name	TCONS_00047357
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1067

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_126:233842..241349-

transcript sequence

>TCONS_00047357 ID=TCONS_00047357|Name=TCONS_00047357|organism=Clytia hemisphaerica|type=transcript|length=1067bp
CACCCTTTGTTTACGTTGTATCCAGGAATGTTCAATGTAGTATTACTGGT
AGACAATGCTGAAACTGTTGGAGGTGGAAGAAGAAAGAAGGAGATGGcgg
aaaatcttttgaaaatagGTGTAAAGATGGAGGTACGAAAACTACAGCTT
GGTGATTTTCTATGGATCGCTAAAGAAAAGTGTGGCAAACAAAGGGAACT
ggttttggatttcattttggaacGAAAGCGAATGGATGATTTAGCCTCCT
CTATCGTCGATGGACGGTTTAAAGAACAAAAGtttcgTTTGAAATCATGC
GGATTGAAGAAATTGATTTACTTGNgattctttttcttttagtttcGTTT
GAAATCATGCGGATTGAAGAAATTGATTTACTTGGTGGAGAAATACGGCT
CCTCTGAACATTTCGTGGTCCCTGAAACTACTCTCAAACAAGCTGTCATG
AACACTCAGGTAGTGGATGGTCTTTTCATCAAAGAGACAACGAGTATACA
AGACTCTGTACAATATCTTCGCCTGATGACCAATCAATTGACCAGAATGT
ATAAGGACAAAATCTTACATGGTGTGAGTATGGAAGATGTgaaaacgatc
aaatcaaatcatCCCTTCAGTGACGTCATTGCACTAGAAGAACAACACCT
GATACAATTCGATGAATTCTCATCACAAACCGATAAAAATAAGGTGTTGA
CTTGTCGCGAGATGTTTGTCAAACAGTTAATGCAAATGAAGGGCGTTTCG
GCTGAGCGGGCGGTGGCTATCGTTAATTTATACCCTACTCCTTCGTGTTT
GATGGACGCACTTGACCAGCTGCCGACAAACGAGCAGAAGATGAATATTG
TCACTGATCTTCCTTTCGGTAAAGCAAGGAAGAAAATTGGTTTGCCGATC
AGTCGTCAGCTGTACGCACACTACACTATGGTAGATGTACCACGTGATTG
AATGTATCCAATGAGAAGTCGTTCGTTAGGTAACCATTTCATTATAACGA
AGGGAAATATACGTGAGAAGAAGACTTGTGTCCTAGATAttgaaacaccc
ccttctcaaagaTTCGG

Run BLAST on NCBI

transcript from alignment at scaffold_126:233842..241349-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047357 ID=TCONS_00047357|Name=TCONS_00047357|organism=Clytia hemisphaerica|type=transcript|length=7508bp|location=Sequence derived from alignment at scaffold_126:233842..241349- (Clytia hemisphaerica)
CACCCTTTGTTTACGTTGTATCCAGGTAAGGTCCTATTCTCAGTGTTTTC
CCTTCCTTATGTACGAATCCGGTTAAACACTAGTTTTCTGTTACGAACTT
TTTCTTTTGTTGCATCTAAAAAAGACTTACTTTCATGTTATTACGGATCC
TTCTCTAAGGTTTTGAGGCTTCTTTTCGATTGTTTTGGAGGATTGTCCTT
CCGTAACTCCATGTATGCTTTCCTACTCTTCCACAGGAATGTTCAATGTA
GTATTACTGGTAGACAATGCTGAAACTGTTGGAGGGTAACAACAATGTTG
AATATTTAAATAATGATCTTCGTCCAAACGATTCGGAAATTCAACATCGA
TCTTTTCTATGACTTCTTTCAATTAGTGTCCGGGTCCTCAGTCGGTAGAG
TGAGCATTCGCTTGCTTAGCATTCTGAAGGGTTGTGGGTGCTATCCCTGT
GCCCCGCTAACTTAGCTTAGATCTGATCTAAATTGGTAAATAAGTAGGAG
CTGAAAGTAGTTGTGGTGTTCATCCTCAGCATTCGATCTCCCAGGTGTAG
CACAAATTAATTCGAGGTTAGGCACCTTCCGAAGCCACCAGATGAAAATA
TTTCGTTTTTAACTTACTTTCACTTTTTCTTTAGTGGAAGAAGAAAGAAG
GAGATGGCGGAAAATCTTTTGAAAATAGGTATACAAATAATTCTTTAAAA
GCACTTTAACCAAGATTCTATGAACGTTGATCTGAGAATGTCTTTCTGAT
TCCTTGGATTCGGGGTCACTTAGAAATAGTGTCTCCAGAAAGCAGGTGTT
GTGGTACCACTTTTTTTTGAGTTTTTAACTCAAGTGGGAAAAGAAAACAT
AACTCAGAAGTAATAGAATTTTTTTCTCTTAGATAATCTCTCTCTCTTTT
TTTGCAGGTGTAAAGATGGAGGTACGAAAACTACAGCTTGGTGATTTTCT
ATGGATCGCTAAAGAAAAGTGTGGTAAGTTGTTATCAAGTTGTTATCATT
AACAGAATTCTTTAATAATCTTCTTTATTCGAAACTTAAATAATCGAAGA
CGCTTTGAGAATTCGGTTAGGATTGGTTCAATCTAGCAATTTTGATTTTC
TTCAAAAAACTTTCAAATCGAGTCGAGTTGAACTAAATAAAAGCCGCCTT
TGAAACAAACCAATTTGCATAACCGTACAATGACCTAGTAGCACTCTGTA
ATTAGAATTTTGTTTTTAAGTTTCTAGATAGGAGGAGAGCTTTGAAAGTA
TCCAAGAAGGGTTGTTACCGTTAAAAACTGGAGTCTCAAGAAACTTGTAC
TTCTATTACTCGAATGTCTACTGAGCTCGAACAAGTTTTCTCCTTGTCCG
TTCACTTAACAATATCTTATAAATCAGTCTCCATAACTCGAGCGGATTTC
AGTTGCCCACGCGTATTGGAGCTGTAGAGACTCTCCTGTAATTTGTTTTT
ATTTCTCTTTTGTTCAGGCAAACAAAGGGAACTGGTTTTGGATTTCATTT
TGGAACGAAAGCGAATGGATGATTTAGCCTCCTCTATCGTCGATGGACGG
TTTAAAGAACAAAAGGTACAGTTGAGTCTCTTTAACTCAAACCTCTATAA
CTCGAATGTCTCCTTAACTCGAACAAGTTTTTTGGTCCCGTCAATTTTAA
CAATGTTAGTTAGAATAATCCTTCATGAACCTATCAACGGACAACACCAC
TAATGATTGGGTTTGGGCTTGCTAAGAGCGAATGTCGTAAGATCTCTGCA
TCTGTGAGTGCACCAATTCAATGGACATCTCATTCAACCCTACGAAACTC
AACCAAATTTCTCTTTTTTCAAGCATTTAGTCCAACACAATTTTCAATAG
TTTGTTTAACTCTACTAGTCATCATTGTTATAGTACAGTTATTGATCAAA
CACTGTACTTTTTTCATTTTAGTTTCGTTTGAAATCATGCGGATTGAAGA
AATTGATTTACTTGNGATTCTTTTTCTTTTAGTTTCGTTTGAAATCATGC
GGATTGAAGAAATTGATTTACTTGGTGGAGAAATACGGCTCCTCTGAACA
TTTCGTGGTCCCTGAAACTACTCTCAAACAAGCTGTCATGAACACTCAGG
TAAACAGAATATAAAACTTTTCTGCTCATTTGTTTAGTACCGAGTTTATA
AACAGTGTTTTTCAGCCAGAAACAGCTGTTTTGTCCAGTTTTTGCGCTTT
TGGAAGCTCAATATCTCGAGTTAGGTACTGAAATCACTTATACTCGCAAT
ATATCACTAATCTTAATTTTTTGAGAGCTTTCGAAAAATATACAACAGGT
CTCCGTTTTCTCAAGCTAAAATTTTCATTAATTTTTCAGCCTATGATTTT
TGCCTGAGACCGTCGTATTTGTCCGAAAATCACACCATTTAAGTGTCCGA
AAAAAAATTGGCACCCAACTTATCCCCTACCCCTTAGCTTTCCAAAAATG
TATAACAAGTGCTTTGACTAAAAAAATCGAGCGATTTTACAAATTTCCCC
CTACTAGCCGATTTAAAGTTAGTTTGAGGTCGGCAAATTTATTAAAGCTA
TTGTTACAGTATATGGCCCCCAAAACGGAGACAGCCCCCAAAACGGAGGT
TTTCATTAAAATGAAGATTCTGACTTGTAGATTTATCAGAATTAAACGAT
TTTTGTTTACTTTGCAAGAATGATGGTTATACTTAAAAATGAGCATGTTT
TTGCTGGTTTGAGACAGATTCAAAATAACATATTTGCGTCTAAAGGAAAT
ATTTTAACACCAAAATTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAATTCTAAATATGAGAAAAAGCAAAAAATCTTGGA
ATTCTATTCCTATCACCTTGAGTTAATAGTTTATAACAAAAAATTAACAT
TATATATAAAACTTTTTGCTGAATCAGCAAAAACGGCAAACTCTGTCATT
TTTTGCAAAATATAGAAGAAAAATATCTTTAAAGCTTAATATTTTCAGTT
TCAGTTAAGCTTTTTTTCTAAAATTTTCACAGCTTATTCCATACATGAAT
GGAACTATTTTCAAAAGAGATTTGTTTTCAAAAACTTGATTAAGACGTTG
TTAAATAAAAATTGTCATTTTGAAAATTTTTAAATTTTCAGTTTGGACTT
TGCAATATCGAAAATCTTGAAATATTTCATAAGAATCATAAATTTTACAT
CCATCGGGTCGTAAATTTAAGGGAAAACAAAAATATGTTCATACCTAGTT
TTTCCCCCTATTAACACTGGGCTTAATAATTTGATTTTAACTACACCTCC
GTTTTGGGGGCCCCAAACCTGCATTTTGACAACCAGGGGTATACTGTAAA
AATTTTATCAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAAAAGAACTTCCAGGAAATAAAGTAAAGATGTTAAAGGTTTTCATGC
AGCAAAAATTTTTGTAAAATCTCTTTTCCTCTAGATTTGAAAGAAATTTC
AAATTTGATCGCCGTTTTGGGGGCCACATACTGTAGTTGCTTTTTCTCTT
TCCTCATATTCGATTTTGCTGAACTTGTAGGCCACTTATTTTTGGCTGCC
GAGAGAATCGATGATAAGGCTGGACATTGTTGGTTTGCCGTCACCCGACC
GACCCTACCTCGAAACCTGCCGACCCAAAAAAATTTATTGCCATTCTAAA
GAAGAAATTTTTCTTCAAAAACTTCAAACAATCAAATCAAAACTCGTATC
TTGTCTGTCTCACAAGCATAAGAATCGTGAATTCCCTGCTAGCGCTCTTC
TGTTTTCCATTCAAAATTACCTAAATGTAAACAAACTGTTAACCCTTCCA
TGGACGAAAATTTCATAAATCGTCAAAAGAAAAAAAAATTCCGACCGACC
GATCCACCTCCAAAATCTAGGGTCGGTTGACGGCAAACCAATAATTTTTT
AAGTCCAGCCCTATTGTCGGCAATGAATTAATTCATTTAAAGTCTATTCG
CTTTAAATGGACATTAATTCTTTTTTTGCTTGCCTCTATTTTTTCAACCA
ATTCTTCCATTCTAACAATTCATATACTGTTGAAAAGATAATTCAGAGCA
CTATGATATTTGAGAAAAATAATTACAAAAATTCTTTAAATGAAGATGAA
AAACGAAGAAGAAGAAAATAGCTTTTTATCTTTGATGCTAGAAACTTCAA
TTTTGGTATCCTCCTGATGATAGCTATACAACTATTTTTCATAAAAAGGG
ATCACATCGAAAGTTATAGCTTCAAGTAGTTAGAGTTCTAGAAGTTTAAG
TCGTTGGAGTCGGAAAATCTGTTTTTTGCTGCTTTTTCACTTTAGCGGAA
CACCTTCTAGAAACTGTAACTTTCGACGCAAAAAAATATGTCAAATTTTT
GTTCGCGAAAGTCGTTTTTCTTTTGTTTAAAAAGTGTTTCTTTAGCAACT
GATAGTAAATACGTTAATTAATTTCTGTTTTAATTACAGGTAGTGGATGG
TCTTTTCATCAAAGAGACAACGAGTATACAAGACTCTGTACAATATCTTC
GCCTGATGACCAATCAATTGACCAGAATGTATAAGGTATAAATATAAGAC
TTCTTCAATAAATAGTACCAACGTACAAAGAGCTTTGTGCTTCCATGTCC
TGGTGCTTCTAAAAGGGGTGACCCCAAACTTTTCACCCTTGCACTGGTAG
TGATAAAAGAACTGATCAATTTGGGATTGCTTCGTTTGAGGTGAAAAGAT
ATACTAAATAAATAGGCTGCATTGTGGCTTTTTGATTTACTCAGTACGAT
AACTTTTATCACATTTCTGTGTGGTTGGACTGTTCCAGAAAAAGTTTGTA
CCCTCTGTGGAGAAGATGAACCCTGCAGTTTCTTTTCAATATTTTAAGAC
TCCCTTTCTTATTTTTGGACCACCCTGGATTTTCAACCTCATTTTACTGA
CTACCCTAGACTTTTTATTTTCCAATCTATTTTGAACGCCACACCCCCTT
AACATAAGAGGGTACATACTATTTCTGGAATAGCCAATTTGAAACCAAGC
CGTTGACGTCTTAACAGGGTACATAGATTGATAAGCAATCATTCTCGCAT
CTTTAGGACAAAATCTTACATGGTGTGAGTATGGAAGATGTGAAAACGAT
CAAATCAAATCATCCCTTCAGTGACGTCATTGCACTAGAAGAACAACACC
TGATACAATTCGATGAATTCTCATCACAAACCGATAAAAATAAGGTTTGT
TTCTAGTTCATTGAGAAAAGAAATATTCAGTAGTTTTATCTACATTGGAG
GCCACTGATGACTTTTTTATTGGCTGGATGATGCCGTAAGCTACCGGCAT
CTCTCCAATTTTTTATGAGTCGACTTCAAAATAACAGTTAAGTAGACGGG
TCTCATCAGAATTGAATCAGAAAGCCGTCAATTTCAGCAACACTGTCATC
GCACTTAGTATACTTTATTGGACATGGTGTCATAAAAAAGGAGCGAAAAA
TAAAGTTCAGCTGGGTTCCAGTCTTTGTCGACACCGAAAAACGACCGACT
CCTGGCAAGCCTGTATCTTAAAGTGACAATGACTCAGTAAGGTCAACAAA
GGAACTAGGAGTCAAGAATCGCTTTAGTGAAATATTAGCATTTTTGTAAT
ATTGTTTTGAGTCATTTTTTCCTGAAAGTCGAATTTTCATCTTTTGAAAG
TTTGTTGGGATGATGATCGCTCGTCCCTTACTTTCATTGAACTTACCAAT
TGATAAATTTCAGGTGTTGACTTGTCGCGAGATGTTTGTCAAACAGTTAA
TGCAAATGAAGGGCGTTTCGGCTGAGCGGGCGGTGGCTATCGTTAATTTA
TACCCTACTCCTTCGTGGTAAGCCTGTGGAAAAACCATTCACATTAAGTG
TGCGTTCTTTTCGCTACCATGTGGAAACCACGTCAACGTAATAAAAAATA
ATGCTCTTGAGGAAGACTGGTTTCAGCGCTGTAGCAAAAGAGACTACATA
CTTTAAGCGAATGGACTCGAAAAAATGCTTATAGTATGCTCATGAGGCTC
ACTCAGGATCAACTTGTACTTGAACATGGATTTAAGATTTTTCCTATTCT
AACTTGGATTTAGTTAAAAGCGTTGTGTTAAAACTTCTCTAATGTTTTTA
CAGACCGAGGTACCATTTTGAGACACGTGTAGCGTTCTCTTCTAGATGAA
GTAAAGTATAATCCGTCCGTTCGTTTGTTTGTATTTCTGTTAGTTTTACT
TTTTATCATTTCAAGGGAGCATCCTTTCTGTTTTTAGTTTGATGGACGCA
CTTGACCAGCTGCCGACAAACGAGCAGAAGATGAATATTGTCACTGATCT
TCCTTTCGGTAAAGCAAGGAAGTAAGTCAAGTACTTTTACATATTATTTT
CCACTTTTACTGAAGTTGACGCTCTATTATTCGACGTTGTACTCTTCAAT
ACACTCCCTTATTATTCGATGAAACTCCAATTCCTCACTTGGACCTTGGA
ATTTTTACTAGTAATGGATATTGACTATCTTAGAAAGAGTGGAAAATCTC
AGTTCAGTTGCTTGCGTTGTTGGTATTTTACAGACCGTTCCGTATTTTAT
ATAAATGCTCATTTTCAGCTTAATCTCTACAAAGGCTAAATTTTTGGAAA
AAGGGTCCCAAAATTCACGGTCTTTTTTCGTCAACTTTAGACCCTAAAAT
TCCAGATTTTCAAAGATCAGGCTCCCCTCATTTCGCAAACCTAGTACCCT
CCCCGGGATTGAAAGTACGATATTTATCGTATGATAAATATTAAAAAATA
TGTGCGTGAAAATAAAGAAAAAAACTAGTTTCAATCCGTCATTCTAAAAG
AAGTGCAAATATTAAGGGTTCACTTTTTCCTGTGTGAGAAAGATTGAAGA
TTCCGCTCTAGACTTTCGGGCTTTCGGGAGAACCCAATGCACTTTCACTC
ATATTTCTCTATTTTATGTCAGGAAAATTGGTTTGCCGATCAGTCGTCAG
CTGTACGCACACTACACTATGGTAGATGTACCACGTGATTGAATGTATCC
AATGAGAAGTCGTTCGTTAGGTAACCATTTCATTATAACGAAGGGAAATA
TACGTGAGAAGAAGACTTGTGTCCTAGATATTGAAACACCCCCTTCTCAA
AGATTCGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030167	XLOC_030167	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_126	supercontig	scaffold_126:233842..241349 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.32571	7.30666	2.31659	0.656611	0	2.24242e-08	1.66917e-06	0	1.96553	2.37757	0.374044	2.09387	1.80378	3.99163	1.17011	2.52913	1.25199	3.34471	0	0.831308	1.24877	0.331622	5.14993	6.05951	0	0	3.41965	0.10746	4.31932	1.79646

Blast

[Close]

BLAST of TCONS_00047357 vs. Swiss-Prot (Human)
Match: MUS81 (Crossover junction endonuclease MUS81 OS=Homo sapiens GN=MUS81 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 1.638e-67
Identity = 125/312 (40.06%), Postives = 184/312 (58.97%), Query Frame = 1

Query:   16 LYPGMFNVVLLVDNAETVGGGRRKKEMAENLLKIGVKMEVRKLQLGDFLWIAKEKCGKQR----ELVLDFILERKRMDDLASSIVDGRFKEQKFRLKSCGLKKLIYLXXXXXXXRLKSCGLKKLIYLVEKYGSSEHFVVPETTLKQAVMNTQVVDGLFIKETTSIQDSVQYLRLMTNQLTRMYKDKILHGVSMEDVKTIKSNHPFSDVIALEEQ--HLIQFDEFSSQTDKNKVLTCREMFVKQLMQMKGVSAERAVAIVNLYPTPSCLMDALDQLPTNEQKMNIVTDLPFGKARKKIGLPISR---QLYAHY 924
            L PG + V+L VD  ET GGG R  E+   L ++ V   VRKL +GDF+W+A+E   +      ELVLD I+ERKR+DDL SSI+DGRF+EQKFRLK CGL+                    + +YLVE++GS  +  +PE+TL QAV NTQV+DG F+K T  I++S  YL L+T  L R+Y+     G ++         +P S  +        L+ F +F++   KNK  + RE+F +QLMQ++GVS E+A A+V+ Y TP+ L+ A D   T +++  +++ +  G+ ++ +G  +SR   QLY  Y
Sbjct:  262 LRPGEYRVLLCVDIGETRGGGHRP-ELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDDLCSSIIDGRFREQKFRLKRCGLE--------------------RRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGFFVKRTADIKESAAYLALLTRGLQRLYQ-----GHTLRSRPWGTPGNPESGAMTSPNPLCSLLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQLYCSY 547

The following BLAST results are available for this feature:

BLAST of TCONS_00047357 vs. Swiss-Prot (Human)

BLAST of TCONS_00047357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MUS81	1.638e-67	40.06	Crossover junction endonuclease MUS81 OS=Homo sapi...	[more]

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TCONS_00047357 (transcript) - C. hemisphaerica