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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047345 ID=TCONS_00047345|Name=TCONS_00047345|organism=Clytia hemisphaerica|type=transcript|length=1822bp
gccATAGCACATGAAGTATTGAGTTGAGTGTTGAAGCATCTTTGGCATAG
CTGGTCCCTtgacttttaatttttatgtttggCATGTATCAGGGTATCGt
gttaagttttttgaaatgatACTTTTCAAAGACAGTCTGTAAAAGCTTGA
CTTTGACTTCAACCCGGACCCAAGAAAAAGTCGACCCTTTTACAGACCGT
CCTTTTCgaaggttttttttaatgacTGTCTATAAATTTTATAACAAAAG
CAAGGTTGTATTTTTTGGCTCTCTCAAGAGACCTGTCATAACTTGACTCA
TTTTATTTAGGCAGAAATATGATCTTCTCAAAACCAATCGACAGAGTGGT
AAATTTTTGTGGGGCTCAAATCATAGCATGTCTGTTGATCTTAGCAGCGT
GCAGCGTGCATTGGgcagatttttattttgatgggCATTATTACAAAATT
GGGTTATGGAAAGTTTGTACTGTAAAGGCAGACGAATGCAACTCCTTTGA
CATGTGGCTTGAAGAAGACGAGAAACTCCCGAGTTGGTTAAGCCAAATCC
GCATATTGATTTGCTTCGCAACAGTATCAGCAGTAGTTGGTCTTCTAACG
TCCTTGATGGGGATTTTCTATTGGAAAATCAAATGCGTTTACACTTCACT
TCTACACTTTATATCTACCGGACTTCTGGTTGGAGTGtgtttcatttttt
acaaaaataaccACTTCGGGCAATAtgtaaaagtgaaaaatctCTCATCG
TTTTATGTAGCAATGATCACAGCTGCATTGACTTTTTTACTTGCAGTCTT
TGGAATAATGGCTGATTTTTGTAGTAGCTGTTGAgttagccaattttttt
tttataaacttttgttTTACTGGTACGTGCAGCGTGCATTGGgcagattt
ttattttgatgggCATTATTACAAAATTGGCTTATGGAAAGTTTGTCCTG
TAAAGGCAGACGAATGCAACTCCTTTGACATGTGGCTTGAAGAAGACGAG
AAACTCCCGAGTTGGTTAATCCAAATCCGCATATTGATTTGCTTCACAAC
AGTATCAGCAGTAGTTGGTCTTCTAACATCCTTGATGGGGATTTtctatt
agaaaatcaaatgcGTTTACACTTCACTTCTACACTTTATATCTACCGAA
CTTCTGGTTGGAGTGtgtttcattttttacaaaaataaccACTTCGGGCA
ATAtgtaaaagtgaaaaatctCTCATCGTTTTATGTAGCAATGATCACAG
CTGCATTGACTTTTTTACTTGCAGTCTTTGGAATAATGGCTGATTTTTGT
AGTAGCTGTTGAgttagccaatttttttttgttataaacttttGTTTTAC
TGGTAGTTAGGCTGATGATATTAACATACCAGTTTAGCGTCAGCCGCCTG
CATGTCTTGAAAGTGCCTAcaagaaaatttcattatttaaaaaattttca
ttattctaTATTTCTTCACAACATACAACCTCCATCTTCGTTAATATCAG
TTATCTCAATGCATGACCCTTTTCCAGGGGTAAACATGGGCATAAACAAA
GAATTCTACAACTGCAATGTCTGGCAGTGTGAATCCCGCCCATCTATCCA
GATTTCTTCAGGCAGTTTTGCACACCTTTGTTTTTTGTTCGGGAGGTAAA
TAaacctatttttgctttagttTGCTTAGAGAAAGGTagtttttcggatt
tttctCAGCTTCTGTCGTATAGAATTTTAAATCTCTAGCATGTTCTTACT
TTCCATGATACAAGAGCAcacagaaaatttcatttcaaacaaaactgggc
atcaaaagttataaacCAAAAG Run BLAST on NCBI transcript from alignment at scaffold_126:49912..51733- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047345 ID=TCONS_00047345|Name=TCONS_00047345|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at scaffold_126:49912..51733- (Clytia hemisphaerica)
GCCATAGCACATGAAGTATTGAGTTGAGTGTTGAAGCATCTTTGGCATAG
CTGGTCCCTTGACTTTTAATTTTTATGTTTGGCATGTATCAGGGTATCGT
GTTAAGTTTTTTGAAATGATACTTTTCAAAGACAGTCTGTAAAAGCTTGA
CTTTGACTTCAACCCGGACCCAAGAAAAAGTCGACCCTTTTACAGACCGT
CCTTTTCGAAGGTTTTTTTTAATGACTGTCTATAAATTTTATAACAAAAG
CAAGGTTGTATTTTTTGGCTCTCTCAAGAGACCTGTCATAACTTGACTCA
TTTTATTTAGGCAGAAATATGATCTTCTCAAAACCAATCGACAGAGTGGT
AAATTTTTGTGGGGCTCAAATCATAGCATGTCTGTTGATCTTAGCAGCGT
GCAGCGTGCATTGGGCAGATTTTTATTTTGATGGGCATTATTACAAAATT
GGGTTATGGAAAGTTTGTACTGTAAAGGCAGACGAATGCAACTCCTTTGA
CATGTGGCTTGAAGAAGACGAGAAACTCCCGAGTTGGTTAAGCCAAATCC
GCATATTGATTTGCTTCGCAACAGTATCAGCAGTAGTTGGTCTTCTAACG
TCCTTGATGGGGATTTTCTATTGGAAAATCAAATGCGTTTACACTTCACT
TCTACACTTTATATCTACCGGACTTCTGGTTGGAGTGTGTTTCATTTTTT
ACAAAAATAACCACTTCGGGCAATATGTAAAAGTGAAAAATCTCTCATCG
TTTTATGTAGCAATGATCACAGCTGCATTGACTTTTTTACTTGCAGTCTT
TGGAATAATGGCTGATTTTTGTAGTAGCTGTTGAGTTAGCCAATTTTTTT
TTTATAAACTTTTGTTTTACTGGTACGTGCAGCGTGCATTGGGCAGATTT
TTATTTTGATGGGCATTATTACAAAATTGGCTTATGGAAAGTTTGTCCTG
TAAAGGCAGACGAATGCAACTCCTTTGACATGTGGCTTGAAGAAGACGAG
AAACTCCCGAGTTGGTTAATCCAAATCCGCATATTGATTTGCTTCACAAC
AGTATCAGCAGTAGTTGGTCTTCTAACATCCTTGATGGGGATTTTCTATT
AGAAAATCAAATGCGTTTACACTTCACTTCTACACTTTATATCTACCGAA
CTTCTGGTTGGAGTGTGTTTCATTTTTTACAAAAATAACCACTTCGGGCA
ATATGTAAAAGTGAAAAATCTCTCATCGTTTTATGTAGCAATGATCACAG
CTGCATTGACTTTTTTACTTGCAGTCTTTGGAATAATGGCTGATTTTTGT
AGTAGCTGTTGAGTTAGCCAATTTTTTTTTGTTATAAACTTTTGTTTTAC
TGGTAGTTAGGCTGATGATATTAACATACCAGTTTAGCGTCAGCCGCCTG
CATGTCTTGAAAGTGCCTACAAGAAAATTTCATTATTTAAAAAATTTTCA
TTATTCTATATTTCTTCACAACATACAACCTCCATCTTCGTTAATATCAG
TTATCTCAATGCATGACCCTTTTCCAGGGGTAAACATGGGCATAAACAAA
GAATTCTACAACTGCAATGTCTGGCAGTGTGAATCCCGCCCATCTATCCA
GATTTCTTCAGGCAGTTTTGCACACCTTTGTTTTTTGTTCGGGAGGTAAA
TAAACCTATTTTTGCTTTAGTTTGCTTAGAGAAAGGTAGTTTTTCGGATT
TTTCTCAGCTTCTGTCGTATAGAATTTTAAATCTCTAGCATGTTCTTACT
TTCCATGATACAAGAGCACACAGAAAATTTCATTTCAAACAAAACTGGGC
ATCAAAAGTTATAAACCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047345-exon-scaffold_126-1575043694:49912..51733 | TCONS_00047345-exon-scaffold_126-1575043694:49912..51733 | Clytia hemisphaerica | exon |
| TCONS_00047345-exon-scaffold_126-1510915933:49912..51733 | TCONS_00047345-exon-scaffold_126-1510915933:49912..51733 | Clytia hemisphaerica | exon |
| TCONS_00047345-exon-scaffold_126-1491911889:49912..51733 | TCONS_00047345-exon-scaffold_126-1491911889:49912..51733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:49912..51733 - |
Blast
The following BLAST results are available for this feature:
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