TCONS_00047312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047312
Unique NameTCONS_00047312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047312 ID=TCONS_00047312|Name=TCONS_00047312|organism=Clytia hemisphaerica|type=transcript|length=1876bp
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAA
AGAGAGAAAGCAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGATGATCT
TCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTATT
ACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTACTACGGAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAAC
AGCTGATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGC
AAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCC
GACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGG
CAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGC
AAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTACTACGGTGCAAAGAGGG
AAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGCTGAT
CTTCCTTGGTATCAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTA
TTATGGAGCAAAGAGGGAAGGTAGCCGACCTTGGCAAGGCTATTATGGAG
CAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTATGGAGCGAAAAGA
GTAGCTGTCTTACCCTGGTATCAAGCAAAACGGGAAGGTAGCAGACCTTG
GCAAGGGTACTATGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCT
ATAATGGAGTAAAAAGGGCTATAGATCTTCCCTGGTATGGTGTTAAAAGA
GAGGCAGGAAGACCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTGTCGA
GTTGCCATGGTACCAAGCAAAGAAGGAATCAGGACGTAGTTTTTATGCAG
CGAAGAAGGAGGCTTTACCGTGGTATGAAAAGTTCAGTAAACGTTCGAAT
ACTGAGGAAAACGTTCCTTTTTTCGTACGAGATTCTGTTTAGTGTGTGAA
TTATTCCTCGAGGACTTATAAAAATACTTGGAAAAATcaatggaaaattt
tggaaagcttTCCTGGACGTTGATATATAgagaaattttatattttcaaa
cacaGCAATTTCAAAAGCAAACTTGAATATTTAAACTAGGATATAGTCTT
TCCTTAGATACGCTTTTTGTGATGAG
Run BLAST on NCBI

transcript from alignment at scaffold_125:90449..92324+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047312 ID=TCONS_00047312|Name=TCONS_00047312|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at scaffold_125:90449..92324+ (Clytia hemisphaerica)
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAA
AGAGAGAAAGCAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGATGATCT
TCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTATT
ACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTACTACGGAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAAC
AGCTGATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGC
AAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCC
GACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGG
CAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGC
AAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTACTACGGTGCAAAGAGGG
AAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGCTGAT
CTTCCTTGGTATCAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTA
TTATGGAGCAAAGAGGGAAGGTAGCCGACCTTGGCAAGGCTATTATGGAG
CAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTATGGAGCGAAAAGA
GTAGCTGTCTTACCCTGGTATCAAGCAAAACGGGAAGGTAGCAGACCTTG
GCAAGGGTACTATGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCT
ATAATGGAGTAAAAAGGGCTATAGATCTTCCCTGGTATGGTGTTAAAAGA
GAGGCAGGAAGACCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTGTCGA
GTTGCCATGGTACCAAGCAAAGAAGGAATCAGGACGTAGTTTTTATGCAG
CGAAGAAGGAGGCTTTACCGTGGTATGAAAAGTTCAGTAAACGTTCGAAT
ACTGAGGAAAACGTTCCTTTTTTCGTACGAGATTCTGTTTAGTGTGTGAA
TTATTCCTCGAGGACTTATAAAAATACTTGGAAAAATcaatggaaaattt
tggaaagcttTCCTGGACGTTGATATATAgagaaattttatattttcaaa
cacaGCAATTTCAAAAGCAAACTTGAATATTTAAACTAGGATATAGTCTT
TCCTTAGATACGCTTTTTGTGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030139XLOC_030139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047312-exon-scaffold_125-1491911889:90449..92324TCONS_00047312-exon-scaffold_125-1491911889:90449..92324Clytia hemisphaericaexon
TCONS_00047312-exon-scaffold_125-1510915933:90449..92324TCONS_00047312-exon-scaffold_125-1510915933:90449..92324Clytia hemisphaericaexon
TCONS_00047312-exon-scaffold_125-1575043694:90449..92324TCONS_00047312-exon-scaffold_125-1575043694:90449..92324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_125supercontigscaffold_125:90449..92324 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.29958	2.97379	0	0	0	0.148855	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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