TCONS_00047304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047304
Unique NameTCONS_00047304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047304 ID=TCONS_00047304|Name=TCONS_00047304|organism=Clytia hemisphaerica|type=transcript|length=278bp
AACACTTTGAGTAGTGGACTCCAAAGCCTCAGTTCTACCAAACTTCCTAG
CATTTTTTCTCACCACAGAAAAGATGGGATGGAAGGAGGCTTTGTCATGG
GTTAAGATAGACCCCATGTTGCTTACTTCAGATGCTTACATCGTTTTGGT
TGGTTTGTAAACTGGTTTGTTTATGCTCTTCCTCAGCTTTCGGCTCGATT
CACCACACCAAGCCAGCAGCTGTGCAGTCATTTCCTTCACGAAATGCTAA
CAGTTTTGGTGTGGTCGATGACAGCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_124:224429..224706

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047304 ID=TCONS_00047304|Name=TCONS_00047304|organism=Clytia hemisphaerica|type=transcript|length=278bp|location=Sequence derived from alignment at scaffold_124:224429..224706 (Clytia hemisphaerica)
GTGGCTGTCATCGACCACACCAAAACTGTTAGCATTTCGTGAAGGAAATG
ACTGCACAGCTGCTGGCTTGGTGTGGTGAATCGAGCCGAAAGCTGAGGAA
GAGCATAAACAAACCAGTTTACAAACCAACCAAAACGATGTAAGCATCTG
AAGTAAGCAACATGGGGTCTATCTTAACCCATGACAAAGCCTCCTTCCAT
CCCATCTTTTCTGTGGTGAGAAAAAATGCTAGGAAGTTTGGTAGAACTGA
GGCTTTGGAGTCCACTACTCAAAGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030134XLOC_030134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047304-exon-scaffold_124-1491911889:224429..224706TCONS_00047304-exon-scaffold_124-1491911889:224429..224706Clytia hemisphaericaexon
TCONS_00047304-exon-scaffold_124-1510915933:224429..224706TCONS_00047304-exon-scaffold_124-1510915933:224429..224706Clytia hemisphaericaexon
TCONS_00047304-exon-scaffold_124-1575043694:224429..224706TCONS_00047304-exon-scaffold_124-1575043694:224429..224706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:224429..224706 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.62278	0	0	1.28324	1.5895	1.02854	0.676121	0.675181	0.701182	1.15293	0.309319	0.381055	0	7.01471	0	0.981558	0	1.74602	1.05826	0	0	3.48012	0	1.6902	0.574015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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