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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047279 ID=TCONS_00047279|Name=TCONS_00047279|organism=Clytia hemisphaerica|type=transcript|length=2491bp
cttcagtcttaaatagatgaacgagttatttcactgatggttatgatttt
ttcacagaacatagtaaaactattttaTAGGAACTTGGaattttttacag
aatttcaaaaaatctgttagttctggagatatattgaaaagtttagacat
cggTAGTTCGCGTttgcgttcccaaaccaaacgcatgACCACATgaatgt
agctaaggaatttttaaaataacacagcatttaaagtgaaacaagatggg
GCAGCGGAggagaagtagtgattggaggtttttgtaattagacagcatga
caaaggtttgttatattttagcataacaaagacaagcttaggaggtaagg
taaattgcgttttgactgcttttaactaTTTTTCTAATACAGAATaactt
caaacttgacttcactgtaGTATAACTGAGAGGATTTCTCAGACTGAAAA
TGTAAGATGTCTTCCCCCCAGTTATTGAAGGGATGTGTTTGACTGACATC
AGAGGaaataagtttttgaaattgtctgCACATGGAATAAAATATTATAG
TTTAGAGAATAATTTCAACTGTCGTCTTACGGGGTACATCTGTCAGAGTA
GTCATTGGCGATCGTTTCAATACCACCAGATCTTGCGACAGCAACAAAGC
AATTCAAATTGCCAATATCAAATCCAATAACCGACATATCCAATGTTTTT
TAGTCAGAAGTCTTCTTCTGaaatttaggtaatttttttAGTGACAAGGC
CGAGAAAACGAAAGGATGTTGAATTTAGTGTGATTTTCTAGCTTGCTTTC
GCTTCGCGAACATTCCCGTAGTGTCATTCGGGTAGGTATCAAATTAAAGT
TGAACTTTCATCCAACAGTGTAATCGGTAACATGGTGCGAGCCATATGGC
CTTACTTGTATTTTACTGACCTGAAAGCTTCGCTGCTCTTTCAAACGACG
CCAAAGTAAAGATATTAAGACTTCGATCTGCAATTTCTTTGCTTGGAGGA
ATTCCAGGAATGTTAATTTGATAATAACGGTCACACTTTCTAAATAAAAA
TCTCAATAAAGATAGAGAAGTTTATTTTCAAGAGTTAAACCaattattta
aaaatctttcaaaaacattcCATTTCGATTTCAAAAACATTCCTTTTGAA
GTTATAATATTTTGTTATGTTCAGATCGCTGAGATATTCAAAGAAAGACT
CTCTTACAGTTCACACCAGAGAAAAACAGGAATAGATTTTCAAGCCACCA
TGAAGATGGAGTCGCCTTTAGAAGTGCTTTCACGAGCAGCATCCATCGTC
CAAAATGAGGATAAATCACTGGTACGAAGAGAATCTACAGACTCGATGTC
AGAGGATGAGCATCATCACCACCACTTTGAACGAAGGACTCCTTCCCCTG
TCTCACCGAAATCTCCCAACGAAAGACGATCACCGAAACGCCACCATCAT
CCTTCCAcagaaaaatctttcaaaaaacttaagTTAGATGACAACAAAAT
TGAACCAAAAGTATTCGAGCGTCATCACCCAAAAAGCGAGATGACAACAA
CTACTTTCTCATCCAACCGACCTCTTTCAACCATCCACGTTTCACGTCAC
TCAAAAGGCGAATGCACCCCGCCGCCCCTCATCGCCATCAATGATACTCG
TAAACAACATTATCGCAAACTTCCCGATTATGACATTCTGTTCCCGAGGC
CGTCTGTAATTGCTTCCACGACCCATTCCACGAAGGTCACGGACGATTAC
CGTTATCAATACCGCTGTGCGGCCGATTGTCAATGCAGGACGACGACCTC
GGCATATCCAGAATACGTCAAAAAATCAACTATCAGTAGCATCATAACGA
GGGATTTCGAACTCCCGACTGTCGACGACCATTTTCGCAAAAGTCTTGGC
GATAAATACGACTTTAGTGACAACTTACACGAACGACCAAGCTCTGTTGA
CGATCACTTTGCCAAAGCTTTAGGAAAGAACTATAAATATGTTTTAGGTT
TGAGTGCTAGCTCTTGATTCATTCGTTCCTCCATTGGGAGGGCtacaata
tttatttttcattatatGATAACCTTGAAattcgttatttttttcatttc
atttattaTTCCGTTTCATGGAGTGTACAGAATCTTATGACCGAAAAGCG
GTATATTTGTTAATATTTAGTATTATGATAAAAACCTATAAAATTTGTTA
ACATTAtctatatttttaaaatttttataaggACCTCTGTTCTCTAACAC
TTTATTAACACTTCACTCTTTTCCaacttttaaagaaattttggaGGGCT
TTTAAAAGTCGATAATAATTTTACTGGACCTGTTTGAAGGGAGAGTTGAA
GTGTTCCtccaaagaaagtgaaaaattgagaTCAGataaaaaagatgatt
tttatttgtaacttttcattcttttgataagaatatgaatagtttaaaaa
aaatacaagttTTCAGTTTTCATCGTTATCTATCATTAAAG Run BLAST on NCBI protein sequence of TCONS_00047279-protein >TCONS_00047279-protein ID=TCONS_00047279-protein|Name=TCONS_00047279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MKMESPLEVLSRAASIVQNEDKSLVRRESTDSMSEDEHHHHHFERRTPSP
VSPKSPNERRSPKRHHHPSTEKSFKKLKLDDNKIEPKVFERHHPKSEMTT
TTFSSNRPLSTIHVSRHSKGECTPPPLIAINDTRKQHYRKLPDYDILFPR
PSVIASTTHSTKVTDDYRYQYRCAADCQCRTTTSAYPEYVKKSTISSIIT
RDFELPTVDDHFRKSLGDKYDFSDNLHERPSSVDDHFAKALGKNYKYVLG
LSASS Run BLAST on NCBI transcript from alignment at scaffold_124:189241..192092+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047279 ID=TCONS_00047279|Name=TCONS_00047279|organism=Clytia hemisphaerica|type=transcript|length=2852bp|location=Sequence derived from alignment at scaffold_124:189241..192092+ (Clytia hemisphaerica)
cttcagtcttaaatagatgaacgagttatttcactgatggttatgatttt
ttcacagaacatagtaaaactattttaTAGGAACTTGGaattttttacag
aatttcaaaaaatctgttagttctggagatatattgaaaagtttagacat
cggTAGTTCGCGTttgcgttcccaaaccaaacgcatgACCACATgaatgt
agctaaggaatttttaaaataacacagcatttaaagtgaaacaagatggg
GCAGCGGAggagaagtagtgattggaggtttttgtaattagacagcatga
caaaggtttgttatattttagcataacaaagacaagcttaggaggtaagg
taaattgcgttttgactgcttttaactaTTTTTCTAATACAGAATaactt
caaacttgacttcactgtaGTATAACTGAGAGGATTTCTCAGACTGAAAA
TGTAAGATGTCTTCCCCCCAGTTATTGAAGGGATGTGTTTGACTGACATC
AGAGGaaataagtttttgaaattgtctgCACATGGAATAAAATATTATAG
TTTAGAGAATAATTTCAACTGTCGTCTTACGGGGTACATCTGTCAGAGTA
GTCATTGGCGATCGTTTCAATACCACCAGATCTTGCGACAGCAACAAAGC
AATTCAAATTGCCAATATCAAATCCAATAACCGACATATCCAATGTTTTT
TAGTCAGAAGTCTTCTTCTGaaatttaggtaatttttttAGTGACAAGGC
CGAGAAAACGAAAGGATGTTGAATTTAGTGTGATTTTCTAGCTTGCTTTC
GCTTCGCGAACATTCCCGTAGTGTCATTCGGGTAGGTATCAAATTAAAGT
TGAACTTTCATCCAACAGTGTAATCGGTAACATGGTGCGAGCCATATGGC
CTTACTTGTATTTTACTGACCTGAAAGCTTCGCTGCTCTTTCAAACGACG
CCAAAGTAAAGATATTAAGACTTCGATCTGCAATTTCTTTGCTTGGAGGA
ATTCCAGGAATGTTAATTTGATAATAACGGTCACACTTTCTAAATAAAAA
TCTCAATAAAGATAGAGAAGTTTATTTTCAAGAGTTAAACCaattattta
aaaatctttcaaaaacattcCATTTCGATTTCAAAAACATTCCTTTTGAA
GTTATAATATTTTGTTATGTTCAGATCGCTGAGATATTCAAAGAAAGACT
CTCTTACAGTTCACACCAGAGAAAAACAGGAATAGATTTTCAAGCCACCA
TGAAGATGGAGTCGCCTTTAGAAGTGCTTTCACGAGCAGCATCCATCGTC
CAAAATGAGGATAAATCACTGGTACGAAGAGAATCTACAGGTATATTTTT
CCTCTAAAAATGATTTATTGTTTTGACTTATCTATCAAAGCTTAAAATTC
TCTCTGTTTACAACTTTGCAGCAATTTCTTAAAGTGTTTTGAGATTAGAA
TGGATGTTTTATAACTTTGTCTTTACCATTTCAGACTCGATGTCAGAGGA
TGAGCATCATCACCACCACTTTGAACGAAGGACTCCTTCCCCTGTCTCAC
CGAAATCTCCCAACGAAAGACGATCACCGAAACGCCACCATCATCCTTCC
AcagaaaaatctttcaaaaaacttaagTTAGATGACAACAAAATTGAACC
AAAAGTATTCGAGCGTCATCACCCAAAAAGGTTCGttgtttttcataaat
tattatttttgccaATGAGCCCGGCATAACAGCTGACAGATAATTGTCCC
ATTCCGCGTCGTTTTCACGAGCTTCGCTACTTTTGTGCTAATTAAATATG
AACATTTTGCTAACCATCTATTTTTCATAagtaaattttgaatgttctta
aatgatCGGTAAATAAAATGACCATTCATCACGTTTCTTTATTATAGCGA
GATGACAACAACTACTTTCTCATCCAACCGACCTCTTTCAACCATCCACG
TTTCACGTCACTCAAAAGGCGAATGCACCCCGCCGCCCCTCATCGCCATC
AATGATACTCGTAAACAACATTATCGCAAACTTCCCGATTATGACATTCT
GTTCCCGAGGCCGTCTGTAATTGCTTCCACGACCCATTCCACGAAGGTCA
CGGACGATTACCGTTATCAATACCGCTGTGCGGCCGATTGTCAATGCAGG
ACGACGACCTCGGCATATCCAGAATACGTCAAAAAATCAACTATCAGTAG
CATCATAACGAGGGATTTCGAACTCCCGACTGTCGACGACCATTTTCGCA
AAAGTCTTGGCGATAAATACGACTTTAGTGACAACTTACACGAACGACCA
AGCTCTGTTGACGATCACTTTGCCAAAGCTTTAGGAAAGAACTATAAATA
TGTTTTAGGTTTGAGTGCTAGCTCTTGATTCATTCGTTCCTCCATTGGGA
GGGCtacaatatttatttttcattatatGATAACCTTGAAattcgttatt
tttttcatttcatttattaTTCCGTTTCATGGAGTGTACAGAATCTTATG
ACCGAAAAGCGGTATATTTGTTAATATTTAGTATTATGATAAAAACCTAT
AAAATTTGTTAACATTAtctatatttttaaaatttttataaggACCTCTG
TTCTCTAACACTTTATTAACACTTCACTCTTTTCCaacttttaaagaaat
tttggaGGGCTTTTAAAAGTCGATAATAATTTTACTGGACCTGTTTGAAG
GGAGAGTTGAAGTGTTCCtccaaagaaagtgaaaaattgagaTCAGataa
aaaagatgatttttatttgtaacttttcattcttttgataagaatatgaa
tagtttaaaaaaaatacaagttTTCAGTTTTCATCGTTATCTATCATTAA
AG Coding sequence (CDS) from alignment at scaffold_124:189241..192092+ >TCONS_00047279 ID=TCONS_00047279|Name=TCONS_00047279|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_124:189241..192092+ (Clytia hemisphaerica)
ATGAAGATGGAGTCGCCTTTAGAAGTGCTTTCACGAGCAGCATCCATCGT
CCAAAATGAGGATAAATCACTGGTACGAAGAGAATCTACAGACTCGATGT
CAGAGGATGAGCATCATCACCACCACTTTGAACGAAGGACTCCTTCCCCT
GTCTCACCGAAATCTCCCAACGAAAGACGATCACCGAAACGCCACCATCA
TCCTTCCAcagaaaaatctttcaaaaaacttaagTTAGATGACAACAAAA
TTGAACCAAAAGTATTCGAGCGTCATCACCCAAAAAGCGAGATGACAACA
ACTACTTTCTCATCCAACCGACCTCTTTCAACCATCCACGTTTCACGTCA
CTCAAAAGGCGAATGCACCCCGCCGCCCCTCATCGCCATCAATGATACTC
GTAAACAACATTATCGCAAACTTCCCGATTATGACATTCTGTTCCCGAGG
CCGTCTGTAATTGCTTCCACGACCCATTCCACGAAGGTCACGGACGATTA
CCGTTATCAATACCGCTGTGCGGCCGATTGTCAATGCAGGACGACGACCT
CGGCATATCCAGAATACGTCAAAAAATCAACTATCAGTAGCATCATAACG
AGGGATTTCGAACTCCCGACTGTCGACGACCATTTTCGCAAAAGTCTTGG
CGATAAATACGACTTTAGTGACAACTTACACGAACGACCAAGCTCTGTTG
ACGATCACTTTGCCAAAGCTTTAGGAAAGAACTATAAATATGTTTTAGGT
TTGAGTGCTAGCTCTTGAATGAAGATGGAGTCGCCTTTAGAAGTGCTTTC
ACGAGCAGCATCCATCGTCCAAAATGAGGATAAATCACTGGTACGAAGAG
AATCTACAGACTCGATGTCAGAGGATGAGCATCATCACCACCACTTTGAA
CGAAGGACTCCTTCCCCTGTCTCACCGAAATCTCCCAACGAAAGACGATC
ACCGAAACGCCACCATCATCCTTCCAcagaaaaatctttcaaaaaactta
agTTAGATGACAACAAAATTGAACCAAAAGTATTCGAGCGTCATCACCCA
AAAAGCGAGATGACAACAACTACTTTCTCATCCAACCGACCTCTTTCAAC
CATCCACGTTTCACGTCACTCAAAAGGCGAATGCACCCCGCCGCCCCTCA
TCGCCATCAATGATACTCGTAAACAACATTATCGCAAACTTCCCGATTAT
GACATTCTGTTCCCGAGGCCGTCTGTAATTGCTTCCACGACCCATTCCAC
GAAGGTCACGGACGATTACCGTTATCAATACCGCTGTGCGGCCGATTGTC
AATGCAGGACGACGACCTCGGCATATCCAGAATACGTCAAAAAATCAACT
ATCAGTAGCATCATAACGAGGGATTTCGAACTCCCGACTGTCGACGACCA
TTTTCGCAAAAGTCTTGGCGATAAATACGACTTTAGTGACAACTTACACG
AACGACCAAGCTCTGTTGACGATCACTTTGCCAAAGCTTTAGGAAAGAAC
TATAAATATGTTTTAGGTTTGAGTGCTAGCTCTTGAATGAAGATGGAGTC
GCCTTTAGAAGTGCTTTCACGAGCAGCATCCATCGTCCAAAATGAGGATA
AATCACTGGTACGAAGAGAATCTACAGACTCGATGTCAGAGGATGAGCAT
CATCACCACCACTTTGAACGAAGGACTCCTTCCCCTGTCTCACCGAAATC
TCCCAACGAAAGACGATCACCGAAACGCCACCATCATCCTTCCAcagaaa
aatctttcaaaaaacttaagTTAGATGACAACAAAATTGAACCAAAAGTA
TTCGAGCGTCATCACCCAAAAAGCGAGATGACAACAACTACTTTCTCATC
CAACCGACCTCTTTCAACCATCCACGTTTCACGTCACTCAAAAGGCGAAT
GCACCCCGCCGCCCCTCATCGCCATCAATGATACTCGTAAACAACATTAT
CGCAAACTTCCCGATTATGACATTCTGTTCCCGAGGCCGTCTGTAATTGC
TTCCACGACCCATTCCACGAAGGTCACGGACGATTACCGTTATCAATACC
GCTGTGCGGCCGATTGTCAATGCAGGACGACGACCTCGGCATATCCAGAA
TACGTCAAAAAATCAACTATCAGTAGCATCATAACGAGGGATTTCGAACT
CCCGACTGTCGACGACCATTTTCGCAAAAGTCTTGGCGATAAATACGACT
TTAGTGACAACTTACACGAACGACCAAGCTCTGTTGACGATCACTTTGCC
AAAGCTTTAGGAAAGAACTATAAATATGTTTTAGGTTTGAGTGCTAGCTC
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047279-exon-scaffold_124-1491911889:189241..190580 | TCONS_00047279-exon-scaffold_124-1491911889:189241..190580 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1510915933:189241..190580 | TCONS_00047279-exon-scaffold_124-1510915933:189241..190580 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1575043694:189241..190580 | TCONS_00047279-exon-scaffold_124-1575043694:189241..190580 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1491911889:190725..190920 | TCONS_00047279-exon-scaffold_124-1491911889:190725..190920 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1510915933:190725..190920 | TCONS_00047279-exon-scaffold_124-1510915933:190725..190920 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1575043694:190725..190920 | TCONS_00047279-exon-scaffold_124-1575043694:190725..190920 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1491911889:191138..192092 | TCONS_00047279-exon-scaffold_124-1491911889:191138..192092 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1510915933:191138..192092 | TCONS_00047279-exon-scaffold_124-1510915933:191138..192092 | Clytia hemisphaerica | exon |
| TCONS_00047279-exon-scaffold_124-1575043694:191138..192092 | TCONS_00047279-exon-scaffold_124-1575043694:191138..192092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_124 | supercontig | scaffold_124:189241..192092 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006627 | TDU_repeat |
Blast
The following BLAST results are available for this feature:
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