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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047277 ID=TCONS_00047277|Name=TCONS_00047277|organism=Clytia hemisphaerica|type=transcript|length=1720bp
GTTCTAttcttgaaaaataataaaaaaggagaaaaatcaaagaaatcaaa
acacaGGCTTTACAAATCAAAAGGAAAAGATACTCTTTCTATAGAACTGA
TCCTATTGGCTTAGAAAGAACAAATTGAACTGGATCATATTTTTGGCCCT
CATAAGAATCGCAGAAAATTGTTTTATGGTTGCAAATTAAATCAGTGagc
tgaagaagaagaagatactTAATACTTGTTGGTGTGCGCTAAATTAATTA
CAATCATTCAAGATGACTTTATTGAATATGGCTGCTTTAGAAAACGATAC
ATATCAAACGAAAGATTTGGTCAAAGATACAGCAAATTTATTAGGCCAAG
AAGACTCGTACAAGAATCGCTATCCCAATGGCAAACGAAAACAAAGACGT
TACCGAACCACCTTTTCACAAATCCAGTTGGATGAGTTGGAGCGAGCTTT
CGAGAAGACACATTATCCTGACGTCTTTATGAGAGAAGAACTTGCCATGA
GAATCAACTTGACTGAAGCTAGAGTCCAGGTGTGGTTTCAAAACAGACGT
GCCAAATGGAGAAAGCGTGAAAAACTCAGTTTCAACATGCAACCGGGACA
ACCCGGTACCGGGATGCCCAACTGTGACGTCACAAACCCCTACATCCCGA
CCAGTCCAAAGCTGGGACAACAAGGTCAACAACAACGCGGCCCTTTCTCG
TCGCACCTTCCGACGCCACTTTCGCATCACAGTCCTTATCAATCATGGGG
ACAATCTTATTACCCACAAGCCACTTCACCATACCCACAATACCCTGAAT
ACCAACAGAATACGCAAATGACCACCGCCGGAACGTTCGGTCGTCAGGTA
GCAGGATACCCATATCATAACAATAATAACGGAATCTCTCGTTTGAATTC
CTCCAATGAGGACATGACACAGGACCCTACAGCTTCGTACGGAAGCCAAT
CATCATTCGCCAATTTGAAAGCACCGACAGGGGGTAGTCAGCTCATATAC
GCTTAAAGAAGCACCCGCAGTGACATCCTCCTGACGGATTGAACAAACAC
ATTAAGGCCACCGATGGCGTAAATTGCAGACCCAAAAATGATCACGTGAT
CTAAGGGTGACGTCATTTTAGATGACAGATTTCATAAACAAgcaaaacga
aaaaaaacacTAAATCACATGAAAACGAGAATTTATTAATTTTATGCAAC
AGAAGACGCGTTCAACAAATATTATATATCATTTGGTTGAATTTTTAGga
tcatttttatttctttacgGCGGTATAAATAATATTATAAATAAAATGCA
AATATTAAACCAAAGAAAGACTCTAGCCATAATttcaacttttatatttt
ttaactttgaaaggaagaatttttttttgaaatcgctGTACATAGTATAT
TTTCATGGTACAAAATTTTgggtttttaagttttaagtgaATTCAATTTG
AAGAGGAAATTCTTAAAAAGTTAATGACAAGGTGGTTGATCCTTGCCAGT
TAGATGGTAATCTTTTCAGAAGCATTTCTTGTTAAAATAATGTTgaattc
tttttactttttaaggCATATATAGCTTATTTTATTGTTCCCTGGaaggt
attttattttattgtagTAAAAAGATTTTATCTTTATTATGTGATGAGCC
TTACTGTAAATATGATTTAGAGCATAAAGAGAAATACAAAGCATTATACT
CGACGAACATacaaaattat Run BLAST on NCBI transcript from alignment at scaffold_124:67301..71653+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047277 ID=TCONS_00047277|Name=TCONS_00047277|organism=Clytia hemisphaerica|type=transcript|length=4353bp|location=Sequence derived from alignment at scaffold_124:67301..71653+ (Clytia hemisphaerica)
GTTCTAttcttgaaaaataataaaaaaggagaaaaatcaaagaaatcaaa
acacaGGCTTTACAAATCAAAAGGAAAAGATACTCTTTCTATAGAACTGA
TCCTATTGGCTTAGAAAGAACAAATTGAACTGGATCATATTTTTGGCCCT
CATAAGAATCGCAGAAAATTGTTTTATGGTTGCAAATTAAATCAGTGagc
tgaagaagaagaagatactTAATACTTGTTGGTGTGCGCTAAATTAATTA
CAATCATTCAAGATGACTTTATTGAATATGGCTGCTTTAGAAAACGATAC
ATATCAAACGAAAGATTTGGTCAAAGATACAGCAAATTTATTAGGCCAAG
AAGGTAATGAACGTTCGGTTTGATCCAAAAGCAAACTGGGTACTCTAATT
TGATTTGTCTGATCTGTAATGGACTTTTTTccagtttgaaatttttcatc
ccaGATATATGGGAGATAAGATTTAAGTGGATTTTTAAaaagccatgtct
aaatttgttgaatttttcaTCTCTAAGCTAGCGTGTGAAAAATGTCTTAT
CTTGATGAAAGGAAAGAAACAACAGatacatttttttggtaaaaacgaAA
GAACATTTTACaacgaacaaaaaaatataagtgATGTAAGAATTTAAATC
TTAaaactgttttgaaatttaaatcttGATCAGAAAACAACAATCCGCTG
AAATTCTCATGAGATTTTTTAAATGGACCGGTTTTTGTGTGAAATGACAA
AAGGGTGAGACGCGTACGAGTGAAGGGAGAGGGTTAAGAGGCTTTGAGGA
GAGTTGTTTTCATAAAGAATGATTCAAAATAATAGGGTCGATGTTGTAAg
aaagtttgaatttcttttataCATCAACCAATAATATTTTATGCATAGCG
CGACCGCAGTAAAAAAGTTACGCACGTTTTGAGAAAAAGTTCGACTTTCA
ACACTTTTTATTATCTCTATTTCAGGACTTTGGGGTTTTTATGTATGAAA
TGTTTAGACGCGCAAACTTTTTTTTGCGATCCCTGTTTGACTCTTCTACC
GATTTAAAAGACACGGAAGAAACTTTTCACCCCTTTGGTTTTCCTTtact
atttttcaaattgataaAAAGTATCTTCGGAATTTTCCCCTTTGGGAAGT
ATAAAAAGTTCCATTGCGACCATTTTACATTCATTCCTTGATTCATTTAT
GAACGTTTGTGATTGCAGGTGTCTTGTTGATGTCGTcataaagaaatttt
gttttcttgaaaCACAACACAGCAGTGTTCGAAGTTAGcgcaaacaaata
aataaataaaagagaaaagtcGAAACACATTTCATTGATTTCTTTGAAAC
TCATCCTTCTAAAAAGCAAGTCGCTAAAGTCAAACGGAATTGCAAAGTGT
TCCATGGAATGTTTCCCCTATTTTCGCACTTTTTCGcgcattttgtttat
ttttaaaggATTTATTCGACGTAAAAGATCGCACCTCAATctgaaatctc
aaaaaagcaaaaataggaaaaaaactCGCCAAATTCCCGAAAACTTTGAA
AGTGAGGCATCTTACAAATGGCCGACGAAGGCATTCTTCAAAAAAGCCTC
TGctacaaaaataaactttttttgagcACCCATCATTGCATTATGACGTG
AACATCTGTTCCGAAGTTgagagaaagaaaacaaaaagagatGAGACAAA
ACAATGACTATGTCAAAAGTCTCATCTACACGACGTTGCATTcaatttgt
aaaaaagaaaagtacAAAACACTGACCAAAGACGTCATTCATCGGAAGAA
GCGAGTCAACTTCAAAAGACTATGcacaacaaaaacttttttcgcaGCAA
CAAAACATCGAATAGGCATCtctagatttttcaaggaaGGATAATACCAA
CAATATATTTTGTTTTAGACGTTGATGCTAAcaagtttaaattttttgat
tgcGTTTTGATAAGGTTTAAGCAGTAGCGCATGTCAGCTGATTAAGGAGT
AAACTAATCAAGATAATTGCAAACCTATTGTTAATTTGTACTTCTTAAAA
CaacatttatttattattatactAACAAGACATCGAGTCATTTGCTAATT
TGCCTTCACGTGTACCGGTGTTCTAATTCTTTTTTCACCAAATATTTTNA
CATCGAGTCATTTGCTAATTTGCTTTCACGTGTACCGGTGTTCTAATTCT
TTTTCCACCAAACATTTTGTTCAATGGGAGAACTCAGTGATGACCAAGGT
TATTAATTTGTTTACGTttaattaattgtttgatgCAACCTTCACTACTA
CTGTGTACTTCTTGAATAGACTAGCCATACCACTCTGCATGGCATAGATA
CCAAATTCATATCACTTTCAatttaaaatggaaaaattaacAATTCTTGT
ATTCTTCTTTCTACTTCAGACTCGTACAAGAATCGCTATCCCAATGGCAA
ACGAAAACAAAGACGTTACCGAACCACCTTTTCACAAATCCAGTTGGATG
AGTTGGAGCGAGCTTTCGAGAAGACACATTATCCTGACGTCTTTATGAGA
GAAGAACTTGCCATGAGAATCAACTTGACTGAAGCTAGAGTCCAGGTGAG
ATTCCATCTTCAATATAGTTTATCAAGGAAAAGCGAACAGTTTTTTATGA
CAACTggaaatttttctgtttttttttcgaaatccccTGTATCGATTTTT
GTAATCAGGTTCGGAGGGAATCTTAATTCTCGagcttttttttctaattt
tgattatGAATGCAAACCTCTATGATCTTAGTCTTTTTTGTAAAGCATTA
CATAAATGCGAGAGTTGTAAAGTGTATGCGAAAAAAAAGAGATTGTTTTC
CTTAAGCAAAACCACTAGAAAATATAGCAAGGTAACGActaatccgccat
tttgaattgaaataaaaataaagcttTATAAAAGTTCGATTGAGCTAGAT
GTTAGATGTGGTTTTCTATTGGATAGTTCAACCGACGACAGATTAAGACC
TAGGTATTGAAAAAGATGTCGTCGTTCAGAGATTTTATTTTGGTATCTTT
ACTCTATGTATCCCATAATAATATGACAAAATGTCTCTCATCAGCATAGT
AGTATGCGCGGCATGCAAAAATCGTGACTTTTTTGTAATCCTCGTCTTTT
TCCTTGTCTCAGGTGTGGTTTCAAAACAGACGTGCCAAATGGAGAAAGCG
TGAAAAACTCAGTTTCAACATGCAACCGGGACAACCCGGTACCGGGATGC
CCAACTGTGACGTCACAAACCCCTACATCCCGACCAGTCCAAAGCTGGGA
CAACAAGGTCAACAACAACGCGGCCCTTTCTCGTCGCACCTTCCGACGCC
ACTTTCGCATCACAGTCCTTATCAATCATGGGGACAATCTTATTACCCAC
AAGCCACTTCACCATACCCACAATACCCTGAATACCAACAGAATACGCAA
ATGACCACCGCCGGAACGTTCGGTCGTCAGGTAGCAGGATACCCATATCA
TAACAATAATAACGGAATCTCTCGTTTGAATTCCTCCAATGAGGACATGA
CACAGGACCCTACAGCTTCGTACGGAAGCCAATCATCATTCGCCAATTTG
AAAGCACCGACAGGGGGTAGTCAGCTCATATACGCTTAAAGAAGCACCCG
CAGTGACATCCTCCTGACGGATTGAACAAACACATTAAGGCCACCGATGG
CGTAAATTGCAGACCCAAAAATGATCACGTGATCTAAGGGTGACGTCATT
TTAGATGACAGATTTCATAAACAAgcaaaacgaaaaaaaacacTAAATCA
CATGAAAACGAGAATTTATTAATTTTATGCAACAGAAGACGCGTTCAACA
AATATTATATATCATTTGGTTGAATTTTTAGgatcatttttatttcttta
cgGCGGTATAAATAATATTATAAATAAAATGCAAATATTAAACCAAAGAA
AGACTCTAGCCATAATttcaacttttatattttttaactttgaaaggaag
aatttttttttgaaatcgctGTACATAGTATATTTTCATGGTACAAAATT
TTgggtttttaagttttaagtgaATTCAATTTGAAGAGGAAATTCTTAAA
AAGTTAATGACAAGGTGGTTGATCCTTGCCAGTTAGATGGTAATCTTTTC
AGAAGCATTTCTTGTTAAAATAATGTTgaattctttttactttttaaggC
ATATATAGCTTATTTTATTGTTCCCTGGaaggtattttattttattgtag
TAAAAAGATTTTATCTTTATTATGTGATGAGCCTTACTGTAAATATGATT
TAGAGCATAAAGAGAAATACAAAGCATTATACTCGACGAACATacaaaat
tat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047277-exon-scaffold_124-1491911889:67301..67653 | TCONS_00047277-exon-scaffold_124-1491911889:67301..67653 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1510915933:67301..67653 | TCONS_00047277-exon-scaffold_124-1510915933:67301..67653 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1575043694:67301..67653 | TCONS_00047277-exon-scaffold_124-1575043694:67301..67653 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1491911889:69720..69895 | TCONS_00047277-exon-scaffold_124-1491911889:69720..69895 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1510915933:69720..69895 | TCONS_00047277-exon-scaffold_124-1510915933:69720..69895 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1575043694:69720..69895 | TCONS_00047277-exon-scaffold_124-1575043694:69720..69895 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1491911889:70463..71653 | TCONS_00047277-exon-scaffold_124-1491911889:70463..71653 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1510915933:70463..71653 | TCONS_00047277-exon-scaffold_124-1510915933:70463..71653 | Clytia hemisphaerica | exon |
| TCONS_00047277-exon-scaffold_124-1575043694:70463..71653 | TCONS_00047277-exon-scaffold_124-1575043694:70463..71653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_124 | supercontig | scaffold_124:67301..71653 + |
Blast
BLAST of TCONS_00047277 vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.665e-31 Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 2
Query: 323 KDTANLLGQEDSYKNRYPNGKRKQRRYRTTFSQIQLDELERAFEKTHYPDVFMREELAMRINLTEARVQVWFQNRRAKWRKREK 574
+D+ L DS + KRKQRRYRTTF+ QL+ELERAF+KTHYPDVF REELAMR++LTEARVQVWFQNRRAKWRKREK
Sbjct: 308 EDSVCLSAGSDSEEGLL---KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
The following BLAST results are available for this feature:
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