XLOC_030117 (gene) - C. hemisphaerica

Overview
NameXLOC_030117
Unique NameXLOC_030117
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_124:62885..71653+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030117 ID=XLOC_030117|Name=XLOC_030117|organism=Clytia hemisphaerica|type=gene|length=8769bp|location=Sequence derived from alignment at scaffold_124:62885..71653+ (Clytia hemisphaerica)
GTACAGCAGAACAATGGAATGTCGAATTTTAATCTCATTCAGTGAAAGCT TGGATTAACACGGAAGCGAGAATTTAGTAGAATATCACCATTAGGTTTGT AATGCAGCAACAACAAGCATCTTCAACGAAAACATctcatcaacaacaac aagacaTTGCATCTTCAGTCACTATCACTCTCATCACTGACCACGCAACA AACACCACACTCAAACCCAGACCTCTCGATTATTTCGCAAACCGAAAAGA ACTCTTAAAAGATATGACCAATTTATCTTCAACATCACCACCCCAAGATT CTTCATGTACACCTTCACCACCCATGTTAGATCAACATCATACAGAATTT GAGAGGACGTCTTGTAAAATACCACACCCTGATTGTTACGGAACACCCAT GAAGTCGGAAATCATTCAAGACACCAATTCTTATCTTGgtaagaaaagat ttttttcgcttaaactttttcttttttctcacttttgatcatttttgagG AATTCTGACCTTTGCTTATAAGAATTTGCGACACTGCAAGCATCCCTCTG CTGTCAGCTAAATCATGAAAACCAAAACCAAACCATTCATTAgctttggg atgttcttaaaaaaaaaatttcttcgtaCTCATTGCAGTACACAACTTAA GCCTGCAAATAAACAAGGTAGTGTTTGGGTATAACGCTCGTAGAGTTGAA AGATACGTACAATTCCGAAAGGTCTTATTCTGGttgttttttgaatgttt agaagatgtgtgtgtgtgtgtgggtGAGTTGTATAGTTCGGTGAGTGTCG AATGAGGTCGTGGTAGTGGAGGgaagtttgatattttttcttctgATTTA CAACAAAAAAGCATCATTGAagtgtttctcatttttctagTTGTTTTCGa cagtaaattaaaaaaatggtttttcactaaaacatagaaaaaataagtga tttttttgttatatgCCGGAGATTAGAAACTTATGCTAGATCGATTAAAG TTTGTAAAAACTATCACTTGTAAAATGTTGAGCGATTTTACACAAACGGG CGATGGGAGGCTTAAGGAGGCtcttatcaaaaaaattgatgatgacCCAA TCATACTTAATGttgcttttgatattttttgttgtcaCATTCAAAAGATT AAGCATTGGTTAGATTAGCATAGTGATACGTAtgagattttcacaaaaaa ttaagTATGAAAAGTGACAGTGCTGAAAATTAATCAATATATCAATTCAC AAGTacgtttttttttcgtcactcGAAAAAATATGCAACAATCTgaacat caaaaacattttgttcaaccctTTCGCCAGTggttggcaaaaaaaaaaat taagacagttgtcaacaacaaaaaatacctcaagGAAAGTTTTGCATCAA CTTCTTGATGACACAAATAGTATGAGACAGGGTCAACAATGGAGGAGTCA ATCACTCGTGGTCCACTGATATCAAAAACTGATAAGAGAATAAGAGCCTC CACTAAAACTGTCTGTCTAACGTTTTGATCTGAATAGTGTAAAGGCACAG CATGGTTGCAAAGACAGCAGACTCAATCTTTTAATGAGGACGACTGATTG TTATGCTTGATTACTTAATACTTAATGATTCTTTTTGTGATAATTAATCG CTAACTCACCAACAAAGTGGGGGTCCGATGCCTTCCCATTGTTTCTTTTC AGACTTCATTGACAAAATGCACACGTACGTCTGTTTACTTAAGGATTCCT CTTCAAAAGGCGCTGCACTAGATGAAGAGatttcagttttcagttttttg agTTGCTGTGTGGACTGAgtttaaattagtattttgcatTTGTTATCTGA TTTGGTTTTTTTAGGGTCTGACGAATTGAAGCCCTTACCTGATTATAATC TTGGTGTGGTGAAACTTCTTGGAATTTTACACATACATATTCATTGGTTT ATTTCTGGTGAAGTTGAGGATTTAATAGAGTTTTGATGCATCAAATTATA TCTAATCTTTCGCTAAATgacgaaaaaaatatcattttcgaAGATTATAA TCAGAGGGAGGAATCTACAGTTTGTAACGATAAGACGAAAGtttatgaac aaaaaaaaatagaaagtgtTCAAAATTAgtgtatttttctttaaaatgga AAATGAAGGTGATTAGCACATCTATTTTTGGTTAATTGGTAGTAGCTAAT TATAGCTACAAATGTTTGGGAGAAAGATGAGCACAATGTAATGAAAGGCA CTCTCTATTTCTAAACAAGATacaaaaatactgatatatatttttctatt gttgtgATAAGTTAAGTGAACAAAAGAAATTAGTAGAACACGAGGAGGAA CAATGGTGAGNTTAAGACAGttgtcaacaacaaaaaatacctcaagGAAA GTTTTGCATCAACTTCTTGATGATACAAACAGTGTGAGACAGGGTCAACA ATGGAGGAGTCAATCACTCGTGGTCCACTGATATCAAAAACTGATAAGAG CCTCCACTAAAACTGTCTGTCTAACGTTTTGATCTGAATAGTGTAAAGGC ACAGCATGGTTGCAAAGACAGCAGACTCAATCTTTTAATGAGGACGACTG ATTGTTATGCTTGATTACTTAATACTTAATGATTCTTTTTGTGATAATTA ATCGCTAACTCACCAACAAAGTGGGGGTCCGATGCCTTCCCATTGTTTCT TTTCAGACTTCATTGACAAAATGCACACGTACGTCTGTTTACTTAAGGAT TCCTCTTCAAAAGGCGCTGCACTAGATGAAGAGatttcagttttcagttt tttgagTTGCTGTGTGGACTGAGTTTAAATTAGTGTTTTGCATTTGTTAT CTGATTTGGGTTTTTAGGGTCTGACGAATTGAAGCCCTTAACTGATTATA ATCTTGGTGTGGTGAAACTTCTAGGAATTTTACACATACATATTCATTGG TTTATTTCTGATGAAGTTGAGGATTTAATAGAGTTTTGATGCATCAAATT ATATCTAATCTTTCGCTAAATGACgaaaaaaacatcattttcGAAGATTA TAATCAGAGGGAGGAATCGACAGTTTGTAACGATAAGACGAAAGtttatg aacaaaaaaaaaatagaaagtgtTCAAAATtagtgtatttttttaaaaaa tggaaaatgaagGTGATTAGCACATCTATTTTTGGTTAATTGGTAGTAGC TAATTATAGCTACAAATGTTTGGGAGAAAGATGAGCACAATGTAATGAAA GGCACTCTCTATTTCTAAACAAGATacaaaaatactgatatatatttttc tattgttgtgATAAGTTAAGTGAACAAAAGAAATTAGTAGAACACGAGGA GGAACAATGATGAGATCGTTAGTAAGGCTTAGAACGTTAAACCATACTAG GATTAAGATGGTATATAGATAGAGTAGCGATGCTCTGTTGATCTCATTTG GTAGAAAATAGTCACCACTGACTGTTGTCCTCTTTTAActatctttgaaa ttttgtttaccTTAGAGAGGATGCTCTTCTTTGAGCTTTACATTTTGAGA AAagttttcttctctttcttacTTGAAGTTGTGATTGCATAGATAACATA GGAAGGATACAGATCATCAGCGTCAATGATTtccttttcatgtttttctc aCGACTCGTGGATAATAGTTTTGTTGGGCTGCATGATGGTGGCGTTAGTT TCTTACCATGTTAACTTCCTTTGAAAATGGTTCTCTATTAATTGTAATTA TTTCAATCAAGGTGCTGTCTGTATTAACAAGTCTGTCTGTTTAATTTATT TGGCAAAAGTTTGTGAGTATCGTTTTTTTAATGATTGagatttcattgtt tttgctTTTGTGAGATTGTTACATGAAATCACATTTTTTACATGTTTTAC ATGACTTTTCTTTTTACAAGAAAGGGTTTGAAACATAGAAAGTCTCTCCT TATTTACTTAAAAAGGGCTATTTTAATCATTTCACATGGGGAATAAAATT GATCAACAAAACAGGAGGAGTAGGGTCCCAAGGGAATTTCAAATGGAAAG CTCTACCTCGCACAGTTTCCATTTTCTTTGAAGTAAAGAAAGGAAAATGG GGACGAACATATTCTGAAACAATGAGAATCaggattttttgctttttatt aaGGATGATGTAAAAAGTCGATTGGTACACCACAGTAATGATAcataaaa aggaagaaaattcatGAATATTTCATACTGAACCCATTGTACTGCAACTT GTATTTTTTTTCGCACCGTGATATCAAAAGGTTCCTTTTGGGAGTTTCTA AAGGGACTGGGGTCCAagcctttttgctttttttacaaATCTGTTTGGAC TTGAGGTAGTTGATTCCAATTTTCTGTTTTTAATTATTCCCATTTCTCAT TTTTAAGGATTGAATAGTTCTAttcttgaaaaataataaaaaaggagaaa aatcaaagaaatcaaaacacaGGCTTTACAAATCAAAAGGAAAAGATACT CTTTCTATAGAACTGATCCTATTGGCTTAGAAAGAACAAATTGAACTGGA TCATATTTTTGGCCCTCATAAGAATCGCAGAAAATTGTTTTATGGTTGCA AATTAAATCAGTGagctgaagaagaagaagatactTAATACTTGTTGGTG TGCGCTAAATTAATTACAATCATTCAAGATGACTTTATTGAATATGGCTG CTTTAGAAAACGATACATATCAAACGAAAGATTTGGTCAAAGATACAGCA AATTTATTAGGCCAAGAAGGTAATGAACGTTCGGTTTGATCCAAAAGCAA ACTGGGTACTCTAATTTGATTTGTCTGATCTGTAATGGACTTTTTTccag tttgaaatttttcatcccaGATATATGGGAGATAAGATTTAAGTGGATTT TTAAaaagccatgtctaaatttgttgaatttttcaTCTCTAAGCTAGCGT GTGAAAAATGTCTTATCTTGATGAAAGGAAAGAAACAACAGatacatttt tttggtaaaaacgaAAGAACATTTTACaacgaacaaaaaaatataagtgA TGTAAGAATTTAAATCTTAaaactgttttgaaatttaaatcttGATCAGA AAACAACAATCCGCTGAAATTCTCATGAGATTTTTTAAATGGACCGGTTT TTGTGTGAAATGACAAAAGGGTGAGACGCGTACGAGTGAAGGGAGAGGGT TAAGAGGCTTTGAGGAGAGTTGTTTTCATAAAGAATGATTCAAAATAATA GGGTCGATGTTGTAAgaaagtttgaatttcttttataCATCAACCAATAA TATTTTATGCATAGCGCGACCGCAGTAAAAAAGTTACGCACGTTTTGAGA AAAAGTTCGACTTTCAACACTTTTTATTATCTCTATTTCAGGACTTTGGG GTTTTTATGTATGAAATGTTTAGACGCGCAAACTTTTTTTTGCGATCCCT GTTTGACTCTTCTACCGATTTAAAAGACACGGAAGAAACTTTTCACCCCT TTGGTTTTCCTTtactatttttcaaattgataaAAAGTATCTTCGGAATT TTCCCCTTTGGGAAGTATAAAAAGTTCCATTGCGACCATTTTACATTCAT TCCTTGATTCATTTATGAACGTTTGTGATTGCAGGTGTCTTGTTGATGTC GTcataaagaaattttgttttcttgaaaCACAACACAGCAGTGTTCGAAG TTAGcgcaaacaaataaataaataaaagagaaaagtcGAAACACATTTCA TTGATTTCTTTGAAACTCATCCTTCTAAAAAGCAAGTCGCTAAAGTCAAA CGGAATTGCAAAGTGTTCCATGGAATGTTTCCCCTATTTTCGCACTTTTT CGcgcattttgtttatttttaaaggATTTATTCGACGTAAAAGATCGCAC CTCAATctgaaatctcaaaaaagcaaaaataggaaaaaaactCGCCAAAT TCCCGAAAACTTTGAAAGTGAGGCATCTTACAAATGGCCGACGAAGGCAT TCTTCAAAAAAGCCTCTGctacaaaaataaactttttttgagcACCCATC ATTGCATTATGACGTGAACATCTGTTCCGAAGTTgagagaaagaaaacaa aaagagatGAGACAAAACAATGACTATGTCAAAAGTCTCATCTACACGAC GTTGCATTcaatttgtaaaaaagaaaagtacAAAACACTGACCAAAGACG TCATTCATCGGAAGAAGCGAGTCAACTTCAAAAGACTATGcacaacaaaa acttttttcgcaGCAACAAAACATCGAATAGGCATCtctagatttttcaa ggaaGGATAATACCAACAATATATTTTGTTTTAGACGTTGATGCTAAcaa gtttaaattttttgattgcGTTTTGATAAGGTTTAAGCAGTAGCGCATGT CAGCTGATTAAGGAGTAAACTAATCAAGATAATTGCAAACCTATTGTTAA TTTGTACTTCTTAAAACaacatttatttattattatactAACAAGACATC GAGTCATTTGCTAATTTGCCTTCACGTGTACCGGTGTTCTAATTCTTTTT TCACCAAATATTTTNACATCGAGTCATTTGCTAATTTGCTTTCACGTGTA CCGGTGTTCTAATTCTTTTTCCACCAAACATTTTGTTCAATGGGAGAACT CAGTGATGACCAAGGTTATTAATTTGTTTACGTttaattaattgtttgat gCAACCTTCACTACTACTGTGTACTTCTTGAATAGACTAGCCATACCACT CTGCATGGCATAGATACCAAATTCATATCACTTTCAatttaaaatggaaa aattaacAATTCTTGTATTCTTCTTTCTACTTCAGACTCGTACAAGAATC GCTATCCCAATGGCAAACGAAAACAAAGACGTTACCGAACCACCTTTTCA CAAATCCAGTTGGATGAGTTGGAGCGAGCTTTCGAGAAGACACATTATCC TGACGTCTTTATGAGAGAAGAACTTGCCATGAGAATCAACTTGACTGAAG CTAGAGTCCAGGTGAGATTCCATCTTCAATATAGTTTATCAAGGAAAAGC GAACAGTTTTTTATGACAACTggaaatttttctgtttttttttcgaaatc cccTGTATCGATTTTTGTAATCAGGTTCGGAGGGAATCTTAATTCTCGag cttttttttctaattttgattatGAATGCAAACCTCTATGATCTTAGTCT TTTTTGTAAAGCATTACATAAATGCGAGAGTTGTAAAGTGTATGCGAAAA AAAAGAGATTGTTTTCCTTAAGCAAAACCACTAGAAAATATAGCAAGGTA ACGActaatccgccattttgaattgaaataaaaataaagcttTATAAAAG TTCGATTGAGCTAGATGTTAGATGTGGTTTTCTATTGGATAGTTCAACCG ACGACAGATTAAGACCTAGGTATTGAAAAAGATGTCGTCGTTCAGAGATT TTATTTTGGTATCTTTACTCTATGTATCCCATAATAATATGACAAAATGT CTCTCATCAGCATAGTAGTATGCGCGGCATGCAAAAATCGTGACTTTTTT GTAATCCTCGTCTTTTTCCTTGTCTCAGGTGTGGTTTCAAAACAGACGTG CCAAATGGAGAAAGCGTGAAAAACTCAGTTTCAACATGCAACCGGGACAA CCCGGTACCGGGATGCCCAACTGTGACGTCACAAACCCCTACATCCCGAC CAGTCCAAAGCTGGGACAACAAGGTCAACAACAACGCGGCCCTTTCTCGT CGCACCTTCCGACGCCACTTTCGCATCACAGTCCTTATCAATCATGGGGA CAATCTTATTACCCACAAGCCACTTCACCATACCCACAATACCCTGAATA CCAACAGAATACGCAAATGACCACCGCCGGAACGTTCGGTCGTCAGGTAG CAGGATACCCATATCATAACAATAATAACGGAATCTCTCGTTTGAATTCC TCCAATGAGGACATGACACAGGACCCTACAGCTTCGTACGGAAGCCAATC ATCATTCGCCAATTTGAAAGCACCGACAGGGGGTAGTCAGCTCATATACG CTTAAAGAAGCACCCGCAGTGACATCCTCCTGACGGATTGAACAAACACA TTAAGGCCACCGATGGCGTAAATTGCAGACCCAAAAATGATCACGTGATC TAAGGGTGACGTCATTTTAGATGACAGATTTCATAAACAAgcaaaacgaa aaaaaacacTAAATCACATGAAAACGAGAATTTATTAATTTTATGCAACA GAAGACGCGTTCAACAAATATTATATATCATTTGGTTGAATTTTTAGgat catttttatttctttacgGCGGTATAAATAATATTATAAATAAAATGCAA ATATTAAACCAAAGAAAGACTCTAGCCATAATttcaacttttatattttt taactttgaaaggaagaatttttttttgaaatcgctGTACATAGTATATT TTCATGGTACAAAATTTTgggtttttaagttttaagtgaATTCAATTTGA AGAGGAAATTCTTAAAAAGTTAATGACAAGGTGGTTGATCCTTGCCAGTT AGATGGTAATCTTTTCAGAAGCATTTCTTGTTAAAATAATGTTgaattct ttttactttttaaggCATATATAGCTTATTTTATTGTTCCCTGGaaggta ttttattttattgtagTAAAAAGATTTTATCTTTATTATGTGATGAGCCT TACTGTAAATATGATTTAGAGCATAAAGAGAAATACAAAGCATTATACTC GACGAACATacaaaattat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047276TCONS_00047276Clytia hemisphaericatranscript
TCONS_00047277TCONS_00047277Clytia hemisphaericatranscript
TCONS_00047278TCONS_00047278Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
paired-like homeodomain proteinTCONS_00047278-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:62885..71653 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07 0.02 0.21 0.23 0.79 0.66 1.31 1.27 0.93 0.66 0.52 0.53 42.56 38.81 1.32 8.91 20.58 17.3 52.85 53.32 13.57 12.99 8.56 9.72 13.6 14.76 71.06 34.12 0.3 0.1