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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047273 ID=TCONS_00047273|Name=TCONS_00047273|organism=Clytia hemisphaerica|type=transcript|length=919bp
NNTGTGTTTTGTCCAAATAAGATACCATAGTCAGCTTCAAGCAAGGCTCC
AATGTCAGTAAGGGAATCACCAACATAAATACACTTCTGATGATTCCctt
cgtttttccatttcattatCCAACCTCTCTTTTCTTGAGATGTTGACACA
GGCCCGAAATCTATTTCTCCATTCATCAAAATAGGCGTAGATGAGCTTAT
AATTTTTTCTGCCGAGACCCAAGCCTTTAGGGATTCCTCCAACAGGGGTT
TAAACCAATTAACTGATAGTATTTTTGTCTCAACATTGTTGTCTTCTTTT
AACAGTTGAAGGACCTCTTTAGCATTGTCTTGAAACACAACCTCTTTTAC
AAGgtttgaaatgttctttgtgCTAATGTCATCAAGAAGATGTTTATTTG
CAATGTCTACTCTAGAGCGTACATTGTATTCATCTAGTGacttgagaaaa
tttaaaagtcTATTCTCATTAGAGCTCCCtctaaataattttaaattgtc
TTCGTATGCTTTAGAATATCCAGCCAAATAATCTTTTGAGCGTTCATTCC
AGacttctttgatttcttttctcTGTTCTTCGGTGCCTTCATTAAATCTA
GTACATGCATGCAACGATAAAAAAGtggtatcaaatttggtcaaagttGC
ATCAAAATCAGAAACAAGAAGAATTTTTCCTGTCATTATTCTTTTCTGTT
TACGAAAAATAACATGCATTATTTAatggaaaactaaaaaaaaattaaca
acagTCGTCTTTGCATACAATTCTTTAGTATATATACAATACATGAAATT
AGTCCTTGTAAAGAAACTTTtgctatagaccttttttcaaagaggacgtc
ctgttgaataattatgtagtccagccataaaaacaatgatagagccatgc
ataattactgtatcatgca Run BLAST on NCBI protein sequence of TCONS_00047273-protein >TCONS_00047273-protein ID=TCONS_00047273-protein|Name=TCONS_00047273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MHVIFRKQKRIMTGKILLVSDFDATLTKFDTTFLSLHACTRFNEGTEEQR
KEIKEVWNERSKDYLAGYSKAYEDNLKLFRGSSNENRLLNFLKSLDEYNV
RSRVDIANKHLLDDISTKNISNLVKEVVFQDNAKEVLQLLKEDNNVETKI
LSVNWFKPLLEESLKAWVSAEKIISSSTPILMNGEIDFGPVSTSQEKRGW
IMKWKNEGNHQKCIYVGDSLTDIGALLEADYGILFGQNT Run BLAST on NCBI transcript from alignment at scaffold_123:493906..494824 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047273 ID=TCONS_00047273|Name=TCONS_00047273|organism=Clytia hemisphaerica|type=transcript|length=919bp|location=Sequence derived from alignment at scaffold_123:493906..494824 (Clytia hemisphaerica)
tgcatgatacagtaattatgcatggctctatcattgtttttatggctgga
ctacataattattcaacaggacgtcctctttgaaaaaaggtctatagcaA
AAGTTTCTTTACAAGGACTAATTTCATGTATTGTATATATACTAAAGAAT
TGTATGCAAAGACGActgttgttaatttttttttagttttccatTAAATA
ATGCATGTTATTTTTCGTAAACAGAAAAGAATAATGACAGGAAAAATTCT
TCTTGTTTCTGATTTTGATGCaactttgaccaaatttgataccaCTTTTT
TATCGTTGCATGCATGTACTAGATTTAATGAAGGCACCGAAGAACAgaga
aaagaaatcaaagaagtCTGGAATGAACGCTCAAAAGATTATTTGGCTGG
ATATTCTAAAGCATACGAAgacaatttaaaattatttagaGGGAGCTCTA
ATGAGAATAgacttttaaattttctcaagtCACTAGATGAATACAATGTA
CGCTCTAGAGTAGACATTGCAAATAAACATCTTCTTGATGACATTAGcac
aaagaacatttcaaacCTTGTAAAAGAGGTTGTGTTTCAAGACAATGCTA
AAGAGGTCCTTCAACTGTTAAAAGAAGACAACAATGTTGAGACAAAAATA
CTATCAGTTAATTGGTTTAAACCCCTGTTGGAGGAATCCCTAAAGGCTTG
GGTCTCGGCAGAAAAAATTATAAGCTCATCTACGCCTATTTTGATGAATG
GAGAAATAGATTTCGGGCCTGTGTCAACATCTCAAGAAAAGAGAGGTTGG
ataatgaaatggaaaaacgaagGGAATCATCAGAAGTGTATTTATGTTGG
TGATTCCCTTACTGACATTGGAGCCTTGCTTGAAGCTGACTATGGTATCT
TATTTGGACAAAACACANN Coding sequence (CDS) from alignment at scaffold_123:493906..494824 >TCONS_00047273 ID=TCONS_00047273|Name=TCONS_00047273|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_123:493906..494824 (Clytia hemisphaerica)
ATGCATGTTATTTTTCGTAAACAGAAAAGAATAATGACAGGAAAAATTCT
TCTTGTTTCTGATTTTGATGCaactttgaccaaatttgataccaCTTTTT
TATCGTTGCATGCATGTACTAGATTTAATGAAGGCACCGAAGAACAgaga
aaagaaatcaaagaagtCTGGAATGAACGCTCAAAAGATTATTTGGCTGG
ATATTCTAAAGCATACGAAgacaatttaaaattatttagaGGGAGCTCTA
ATGAGAATAgacttttaaattttctcaagtCACTAGATGAATACAATGTA
CGCTCTAGAGTAGACATTGCAAATAAACATCTTCTTGATGACATTAGcac
aaagaacatttcaaacCTTGTAAAAGAGGTTGTGTTTCAAGACAATGCTA
AAGAGGTCCTTCAACTGTTAAAAGAAGACAACAATGTTGAGACAAAAATA
CTATCAGTTAATTGGTTTAAACCCCTGTTGGAGGAATCCCTAAAGGCTTG
GGTCTCGGCAGAAAAAATTATAAGCTCATCTACGCCTATTTTGATGAATG
GAGAAATAGATTTCGGGCCTGTGTCAACATCTCAAGAAAAGAGAGGTTGG
ataatgaaatggaaaaacgaagGGAATCATCAGAAGTGTATTTATGTTGG
TGATTCCCTTACTGACATTGGAGCCTTGCTTGAAGCTGACTATGGTATCT
TATTTGGACAAAACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047273-exon-scaffold_123-1491911889:493906..494824 | TCONS_00047273-exon-scaffold_123-1491911889:493906..494824 | Clytia hemisphaerica | exon |
| TCONS_00047273-exon-scaffold_123-1510915933:493906..494824 | TCONS_00047273-exon-scaffold_123-1510915933:493906..494824 | Clytia hemisphaerica | exon |
| TCONS_00047273-exon-scaffold_123-1575043694:493906..494824 | TCONS_00047273-exon-scaffold_123-1575043694:493906..494824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:493906..494824 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023214 | HAD-like_dom |
Blast
The following BLAST results are available for this feature:
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