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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047248 ID=TCONS_00047248|Name=TCONS_00047248|organism=Clytia hemisphaerica|type=transcript|length=2551bp
ctaaaatatcatttttgacATGGGTCAGGAGATTTGGAGTAAGATTTCTT
GATTGGAACGATTGAGTATGGAATCCATCCAATAGAGGATGAAATGCATT
TCACAGTCAAAGCTGAACAATgTTCAAAAAACACGGAATAAACACGCAAG
GAGTACATGATCAATAGATGAAGTGCGTTTAAAATGGAAACAACATAAAA
GTCAACCAGCGACCGGTGTAGCTTTGTTTTTTGGCCAAAAGAAACAGGAA
AACGAACACATACCACAATTACCGTGATGAACAAACAATATGTTGCTGTT
TTCGTCTCATTGAACTGTTTCGGTAACTTTCGAGCACGAAACGCTTGGAC
AGATGCAAAAACAGTAATCAGAAGCACAAAAACGAACACAACCATCATTT
GACTCATATTGTCACAGTAAAGTTCTCTAGTAAGTTCTTCATGATACATT
TTTGCTATAACTCCAATAGGATTCTCGATTGATGAAATGAATAAAGCAAC
AGCCAGAATTAAGAGAAAGATAATAATAGTGAAGGCTTCAACACTTTTTG
AGACTGTAATCATCCGTTTAGATAGTCGAACTTTCGATTGAAAGGCGATC
AACATTTTATGTGTCTTAGTGAGTGTTATTGTGTAGATAATAATCAATAA
TGTACCAACAGTTATTGGCTGGAAATGACATAAGGTGAGTGTTGGATTAA
GGAGATAAAACAAAGGCATCAGAATggtcaataaagcatgacagatTAAT
GAAACAATCGAACTTTTGAAATCGGACGACAGAATGATCGGTGTTTCTCT
GTATCTGACAAAGGTGTATAAGACGAGCAAAATGTATACTCCCTGGATTG
TCAACAATACCAACGATGTGATAATTGCTGGAGAGTTCAATTTGACCCCA
ATATTTCGGTAAGGATCAATACAGTGTGTTTTATTCAATGACGATTCGGT
AAATTCTGGACAGGGATGACACCTGGACGTCGAGTAATTATTCTTATAGT
AATTGGTTGGGCATTTTACGCAACGCCAGGCATATATTAATTGATTCGGG
CCTTTCTTAAACTCCTCTTTCTTCGGCTCAAATCCTCCTGGACATTTAGA
AGGACCACATGGGAATGTTTGATTCAAATCAAccgaaattcttttcaaaa
cgtTTTCTGACATTTCACGGTACCACACAAAGCTTCGTCGATCAATGTTA
AAATGTAACGTTTTCAATAATGCTTCATCAGATATTTGTCCCCTTATATA
TCCAACTTCTTTAGTGTATATTAGCAGAGCTGGATTAACCAACCAGATCG
GTAGCATAACAGCCTCAATCATCTCGTCTAGAAGGGTCTCTTTGTTGTCA
AACTCCTCAatcattttatcaacatttgtataatttgtttttgagaaata
tgCTTGAATCAAAGAGTCGTCTGTAATCttcttataatatttctttcctG
GTCTTTCCAATTGAGTTTGGATATCTGAGTATTTGTACCGAATGTCGTTG
TACTTTTGCATAGATAACATAGGGTGTTTTCTGAATAAGTGTTTTTCTAT
TTGGGATGTATCTTTGGCTTTGACTGTGAAACCAAAGGACATATCAGAAT
ACCAAATCCAAAGACGATGCTTGATGTCCATGACATTATCGATGAGCTGT
GAACGAACTTCAGAGCTGCACCATACAATGATTAATTGAATATGTGGGTT
ACCGACAACGAAATCTCTAATGTGGGTCAAAGTTGTTTCATTAATTTCAG
TGATGATTAATTTCTGTACGCAGATATTGTTGTCTTCTCGGATTCTTTTC
CAGACTATATCACTGTGTAGCTGTGTTAATTGCTGATTGATGTTGGGTAG
AATTAAGAGGAGgatatttgatgtatttgtGAGTTCTATTTCTCGTTGAA
TACTATCTATATCAACAGTTACTTGATCGAAACTCGGAAAATAATacttc
aaaaagtttggatgAGTGTTTGGGTGACTTTCCTCGGTCACGGCAAACAA
AGGGATATTATAGCTTGACAATAAATCAGCCACGACTTTGTTGTAGTGGT
ATGGAAGAAACGAAACGACTGCTAAAGTCCTTGTGGAATCGTATTGGAAA
CATGTACAAATCTGACACCCGTTGCAATTCTTTCCTTTAGTGATGATCTT
TTGCAGCGGGTTAAACGGTTTTTGTTTCAGGAAGATTTCTAGTACCGCAC
TTACCAATCGATCAAGGCTACCACAAGCATTCACTAACTTAAAACCAAtc
gtttttcttgaatttgttTTTGCCAATTGTTGACCGATGATGTATCTCAG
CTTCAAATGAAATCGGACAATGTTTCGATCCAAAGTTGTCTCATTGAAAG
ACACCAATGAGAATATGTTGACATATTTGACGTAATTGATCTTGTCCACG
TGACACTGTGTCACATTCACATTACCAATCTGCCCATGAATACCTTGAAA
GCAACAGATAATGGATAGGAATCTAAACAGCTTccataatttcatttttc
ttctagATTTTTTAAATGTCCAGCTTGAAAACAAGTTCACTCTACCTTGT
G Run BLAST on NCBI transcript from alignment at scaffold_123:481531..486643- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047248 ID=TCONS_00047248|Name=TCONS_00047248|organism=Clytia hemisphaerica|type=transcript|length=5113bp|location=Sequence derived from alignment at scaffold_123:481531..486643- (Clytia hemisphaerica)
CTAAAATATCATTTTTGACATGGGTCAGGAGATTTGGAGTAAGATTTCTT
GATTGGAACGATTGAGTATGGAATCCATCCAATAGAGGATGAAATGCATT
TCACAGTCAAAGCTGAACAATGTAAGTCCTTGACTTTATCTACTGAAATC
TGTGCTATAAAATGGCAGGCTGTACTTTTTTCACCATTACTTTCAATGAT
ATAGATATAATTAAAAATGATAAGTAGTTAGAAAGATAACTTTGATCCAA
CTGATGTAAGTGTTGAAGAAATTCCAGTTCGAATATACTCCCTTGCAGAA
AGATCATGATCCAGTGTGGTTTATTTATTTATTTATTTATCTTTTGGATT
GTTAACCATTGCTACGGCGTGGCATCAGTACCAAAAACAAGAAATTTAAA
AAAAGATGTGAGAAACAAATCAAATTTAAGGCTTGGTGACACGAGAAGTT
TTTTTCGCGTTGGTGCAATGCAACATGCTCCATCCATTTCCTAAGTGGCT
GTACTGCAGCACAATCCGAATTTTTGTCATTTTAGCGTATTTGATTGATG
AGAGAATCTTTTTTATCATCAACATGAAAATACGAGNTTAGCGTATTTGA
TTGATGAGAGAATCTTTTTTATCATCAACAGGAAAATACGAGCAATCTGA
TTGGCTGAAAATAGGTTCATAAAACCTGTATTTCATATTTTACGCGTAAA
AAAAGATACCGTGTTCAAACGAAGGGGTCTGGTAAGCAAAAGATCATATT
TAGTACAACTTCAAGTCGACGATAAATCAGTTATCACACTTTGGCAATAT
TCACTCGTAAAATATTGGATATATTTTTCTCGTTCAGAGTTTTCTATACT
CTGTTGTACTTGTTACCATGCAATAATTATTACCTTAAGTTGATTAATTT
TCGCGGAGACTGTTTTTTGTGAATCGAAAATTCACCTAATTTCTTTCATT
TACCTAGGGGTGTTTGCAAAAGAGCTGATTTTTATTTTTTTTGCAAGAAC
TGAATTTCTTTAAAGTACTAAATTAATGGGGCCTGGAATTTCCGAGTTAT
TTTTTCCCGAGTTATTCTGCATGTGACGTGATAACTTCAGTTTTGATGAC
GTCACCACAAAAATTATAACTCGAGTTTTTTTCGAGCTTTTAACTTTTCG
AGTTATTTGACAAATTTTAACTCAGCTTTTTTTCGTGCCTTTAATTTTTC
GAGTTATTTGGTATTTTTTAACCTTTTCATTCATGTATAAAACATCAAAT
TTGGTCAATTTGATCCAAAATTACGAGGTTTTTAAGTTTTGCCTGAAAAG
GCTTGTGATGACGTCATCACAAAACTTTCAACCTTCATAACTTTTAATAG
GAAGATTTTCAAGGCATGTTTTGTAACTCAATTTTCATCAGCATTTCATG
CTCTTTCCGCTGAAACCATCAGATTTTGAATATTTTCAAAAAAACAATTT
CTTGCCCAGCCACCTGATAACGTCATCTGGAAGGTGGCCAGGTGGAAAAT
TTGGTGTTACTGTTTGAAATTAAGTTTAGACCCTCTAAGGATCATCTGTG
CCAAATTTGATGCTTTTATCACCATCTGAAGTATTCTTACGTTTTTATGT
GCTACCAGACCTCACTAATAATATTTAACACAAATCTGCCCCTTCAGGTA
ACAAGCTTATATATAAACAAGTCAAATTTTCCATAAATCGAATATCTACT
ACAAAAATATAATGTAAATAACTCGAAAACTTTGAGGCACGAAATAAACC
AGAGTTAGAATTTATAAAATATCTCGAAAAGTTAAAGGCACGAAAAAAAA
CCCGAGTTAAATTTTTTCAAATGATATACATAAAATTTCAATTAACTTTT
TAAGGTGCATATTATAAATACCCACATATTATTCATCAGAAACACACAAA
ACTATTTCCTTCAAAAATACATCCATATCCATACACCTTATCGGTCCTTC
TTACGCCGGCCCTTAAATTGGCGTTATTTTTAGGGTAATAAAGCGTAATT
TAGCGTAATAAAGGCCGGCGTTAAAAGGGCCAAAATGTTGCAAATTTTAC
TTTAAAAGTTGCGTTAATTTTTGACCATTTTTCTCTATTTAAAGGATTTT
GAGTATATAATTCGAAGACGAAAATTATCCATTGATATACTCCATATCTA
AAACTTCGCAAAAATCTGTGATTTTCAATGGAATTTTCAACAGTTTACTA
CTGAAAAATGATATTTTAATGTAAATTGACGCATAAATAGGCATTCTAAC
AAATTTTGGCGTTATTTACGGCCCTAATTGGCGTAAGCCCGAAATCAGGC
TGTGGCGTAATAAGGGCCGGCGTAAAAAGGGCTGATAAGGTAGATATTTT
GCTTCGATTTTCTTTTCAAAAGACACTGATATATTGCTTGAAAAAATGCA
CTGATATTTTCTTTTTAAAAATTCACAGACATTTCTCATCAAAAACACAC
AACACTTTGTTCCAAAGAACAAAAATAATATAATACAAAAAAATACGCAT
TTTCCAAAATCCACAAATATTTTCCTTTAGAAATACACAATACTTTGTAT
TTTGAAAGCATCCTTTTAGTTCCTGTATGCCAACTTTATTACCCTTGGTG
AGCTTGGCTCAATGTTTTTGCAACTTTTTGTTTCGACTGCTGAATCATTT
CAGCTCTAAAATACTGTTTTGTATTTTTCTCAGGTTCAAAAAACACGGAA
TAAACACGCAAGGAGTACATGATCAATAGATGAAGTGCGTTTAAAATGGA
AACAACATAAAAGTCAACCAGCGACCGGTGTAGCTTTGTTTTTTGGCCAA
AAGAAACAGGAAAACGAACACATACCACAATTACCGTGATGAACAAACAA
TATGTTGCTGTTTTCGTCTCATTGAACTGTTTCGGTAACTTTCGAGCACG
AAACGCTTGGACAGATGCAAAAACAGTAATCAGAAGCACAAAAACGAACA
CAACCATCATTTGACTCATATTGTCACAGTAAAGTTCTCTAGTAAGTTCT
TCATGATACATTTTTGCTATAACTCCAATAGGATTCTCGATTGATGAAAT
GAATAAAGCAACAGCCAGAATTAAGAGAAAGATAATAATAGTGAAGGCTT
CAACACTTTTTGAGACTGTAATCATCCGTTTAGATAGTCGAACTTTCGAT
TGAAAGGCGATCAACATTTTATGTGTCTTAGTGAGTGTTATTGTGTAGAT
AATAATCAATAATGTACCAACAGTTATTGGCTGGAAATGACATAAGGTGA
GTGTTGGATTAAGGAGATAAAACAAAGGCATCAGAATGGTCAATAAAGCA
TGACAGATTAATGAAACAATCGAACTTTTGAAATCGGACGACAGAATGAT
CGGTGTTTCTCTGTATCTGACAAAGGTGTATAAGACGAGCAAAATGTATA
CTCCCTGGATTGTCAACAATACCAACGATGTGATAATTGCTGGAGAGTTC
AATTTGACCCCAATATTTCGGTAAGGATCAATACAGTGTGTTTTATTCAA
TGACGATTCGGTAAATTCTGGACAGGGATGACACCTGGACGTCGAGTAAT
TATTCTTATAGTAATTGGTTGGGCATTTTACGCAACGCCAGGCATATATT
AATTGATTCGGGCCTTTCTTAAACTCCTCTTTCTTCGGCTCAAATCCTCC
TGGACATTTAGAAGGACCACATGGGAATGTTTGATTCAAATCAACCGAAA
TTCTTTTCAAAACGTTTTCTGACATTTCACGGTACCACACAAAGCTTCGT
CGATCAATGTTAAAATGTAACGTTTTCAATAATGCTTCATCAGATATTTG
TCCCCTTATATATCCAACTTCTTTAGTGTATATTAGCAGAGCTGGATTAA
CCAACCAGATCGGTAGCATAACAGCCTCAATCATCTCGTCTAGAAGGGTC
TCTTTGTTGTCAAACTCCTCAATCATTTTATCAACATTTGTATAATTTGT
TTTTGAGAAATATGCTTGAATCAAAGAGTCGTCTGTAATCTTCTTATAAT
ATTTCTTTCCTGGTCTTTCCAATTGAGTTTGGATATCTGAGTATTTGTAC
CGAATGTCGTTGTACTTTTGCATAGATAACATAGGGTGTTTTCTGAATAA
GTGTTTTTCTATTTGGGATGTATCTTTGGCTTTGACTGTGAAACCAAAGG
ACATATCAGAATACCAAATCCAAAGACGATGCTTGATGTCCATGACATTA
TCGATGAGCTGTGAACGAACTTCAGAGCTGCACCATACAATGATTAATTG
AATATGTGGGTTACCGACAACGAAATCTCTAATGTGGGTCAAAGTTGTTT
CATTAATTTCAGTGATGATTAATTTCTGTACGCAGATATTGTTGTCTTCT
CGGATTCTTTTCCAGACTATATCACTGTGTAGCTGTGTTAATTGCTGATT
GATGTTGGGTAGAATTAAGAGGAGGATATTTGATGTATTTGTGAGTTCTA
TTTCTCGTTGAATACTATCTATATCAACAGTTACTTGATCGAAACTCGGA
AAATAATACTTCAAAAAGTTTGGATGAGTGTTTGGGTGACTTTCCTCGGT
CACGGCAAACAAAGGGATATTATAGCTTGACAATAAATCAGCCACGACTT
TGTTGTAGTGGTATGGAAGAAACGAAACGACTGCTAAAGTCCTTGTGGAA
TCGTATTGGAAACATGTACAAATCTGACACCCGTTGCAATTCTTTCCTTT
AGTGATGATCTTTTGCAGCGGGTTAAACGGTTTTTGTTTCAGGAAGATTT
CTAGTACCGCACTTACCAATCGATCAAGGCTACCACAAGCATTCACTAAC
TTAAAACCAATCGTTTTTCTTGAATTTGTTTTTGCCAATTGTTGACCGAT
GATGTATCTCAGCTTCAAATGAAATCGGACAATGTTTCGATCCAAAGTTG
TCTCATTGAAAGACACCAATGAGAATATGTTGACATATTTGACGTAATTG
ATCTTGTCCACGTGACACTGTGTCACATTCACATTACCAATCTGCCCATG
AATACCTTGAAAGCAACAGATAATGGATAGGAATCTAAACAGCTTCCATA
ATTTCATTTTTCTTCTAGATTTTTTAAATGTCCAGCTTGAAAACAAGTTC
ACTCTACCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047248-exon-scaffold_123-1575043694:486523..486643 | TCONS_00047248-exon-scaffold_123-1575043694:486523..486643 | Clytia hemisphaerica | exon |
| TCONS_00047248-exon-scaffold_123-1575043694:481531..483960 | TCONS_00047248-exon-scaffold_123-1575043694:481531..483960 | Clytia hemisphaerica | exon |
| TCONS_00047248-exon-scaffold_123-1510915933:486523..486643 | TCONS_00047248-exon-scaffold_123-1510915933:486523..486643 | Clytia hemisphaerica | exon |
| TCONS_00047248-exon-scaffold_123-1510915933:481531..483960 | TCONS_00047248-exon-scaffold_123-1510915933:481531..483960 | Clytia hemisphaerica | exon |
| TCONS_00047248-exon-scaffold_123-1491911889:486523..486643 | TCONS_00047248-exon-scaffold_123-1491911889:486523..486643 | Clytia hemisphaerica | exon |
| TCONS_00047248-exon-scaffold_123-1491911889:481531..483960 | TCONS_00047248-exon-scaffold_123-1491911889:481531..483960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:481531..486643 - |
Blast
The following BLAST results are available for this feature:
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