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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047242 ID=TCONS_00047242|Name=TCONS_00047242|organism=Clytia hemisphaerica|type=transcript|length=758bp
GTTACTTCTGAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGA
CAATGATTGTTCTCACAATGGCCCTTTTCGCTGtttgTTCAGCCTCCTCA
TTTTACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACC
ACACGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTAC
AATGCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATC
TTTAACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAA
ATTCGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATT
TCAACAAAGACACGACAACGATGACAACGACCCCTACTGCGACCACCTCC
ACAACAACTGAGAAAATCGAACAACTTCCTCACGATATTCACTGTCCCTC
CTACTTGTGCAAATGGAAGCCAAACGGCGCTTTATTCCGCTTGAGAAATG
ACAAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTACTGTAGA
CAATGTCCTTCACATcaatatttcaacaacaaatttTCTGTTTGTGTCAG
AAGAACTGTTGCTAAAGACTGGTAAATTGGAAAACACGGAGCTGAAAATG
CGACCGGACACATTTCTTTCAACtttgtactttatattttttaagtttcc
aTAGCCTTTTGAATTTATTCATAATTCTTCAACTTCTTTACGTAGACTGT
ACTTTAAT Run BLAST on NCBI protein sequence of TCONS_00047242-protein >TCONS_00047242-protein ID=TCONS_00047242-protein|Name=TCONS_00047242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
LLLKQTSTSEKQLKMKTMIVLTMALFAVCSASSFYEPYNDCPSSLCKWKP
HGATFRLSDKLAPVFVQCSHGNAICLNCPHGTIFNNQHNVCVRDQRGSKK
FGHFNKHGHHGDEVHHFNKDTTTMTTTPTATTSTTTEKIEQLPHDIHCPS
YLCKWKPNGALFRLRNDKPQYYVQCSNGIAYCRQCPSHQYFNNKFSVCVR
RTVAKDW Run BLAST on NCBI transcript from alignment at scaffold_123:447587..448915- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047242 ID=TCONS_00047242|Name=TCONS_00047242|organism=Clytia hemisphaerica|type=transcript|length=1329bp|location=Sequence derived from alignment at scaffold_123:447587..448915- (Clytia hemisphaerica)
GTTACTTCTGAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGA
CAATGATTGTTCTCACAATGGCCCTTTTCGCTGGCAAGTTTTTCAATTTT
TAATTTTAAGTTAAACCTTTGAAACTTGTTCTTCTTTATTTTTTACACTC
TTACGAGATAACTTTTAGTCTGCCATTTTACAGTGTTTAGTGTGGATTTT
CTATGAATGAGATTTGTTTTCATTTTTCAGTTTGTTCAGCCTCCTCATTT
TACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCACA
CGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACAAT
GCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCTTT
AACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAATT
CGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTTCA
ACAAAGACACGACAACGATGACAACGACCCCTACTGCGACCACCTCCACA
ACAACTGAGAAAATCGAACAACTTCCTCACGATATTCACTGTAAGTAGAA
CGTCTTTCTGTTTATGACCATTGAAGAAACATTAAAGGTTGTGTTTTGAA
TAATAAGACTGAGCTCATATGCTAACTCATCAATTTTAAATCAAAAATCT
TTTTCACATCGAATTGACACGGATGTGGAGCAATACTGGTTGGAAAGAAG
GAAATAAAATCAATTTTGTTTATTCAGCAAGAAATCGAACAAATTGTAGC
AATAGGAGACACCGGTCTAATATAAAACATGTGCCTGACATGAAACGAAA
ACATTTTGAGAAAGCATTTCTATAATTTGACTTTATTTCGATTTCTTTGG
TTATTTCATATACAAAAATAATCCTTCATCTGATCCGATAGAGTGCAAGC
ACTGTTTAATCATTGTTTTAAAATGGTTCACATTCTTTTGAAAATATTTC
GTCATTTCTACCAGGTCCCTCCTACTTGTGCAAATGGAAGCCAAACGGCG
CTTTATTCCGCTTGAGAAATGACAAACCACAATATTACGTTCAATGTTCG
AATGGAATCGCTTACTGTAGACAATGTCCTTCACATCAATATTTCAACAA
CAAATTTTCTGTTTGTGTCAGAAGAACTGTTGCTAAAGACTGGTAAATTG
GAAAACACGGAGCTGAAAATGCGACCGGACACATTTCTTTCAACTTTGTA
CTTTATATTTTTTAAGTTTCCATAGCCTTTTGAATTTATTCATAATTCTT
CAACTTCTTTACGTAGACTGTACTTTAAT Coding sequence (CDS) from alignment at scaffold_123:447587..448915- >TCONS_00047242 ID=TCONS_00047242|Name=TCONS_00047242|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_123:447587..448915- (Clytia hemisphaerica)
GTCCCTCCTACTTGTGCAAATGGAAGCCAAACGGCGCTTTATTCCGCTTG
AGAAATGACAAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTA
CTGTAGACAATGTCCTTCACATCAATATTTCAACAACAAATTTTCTGTTT
GTGTCAGAAGAACTGTTGCTAAAGACTGGTAATTTGTTCAGCCTCCTCAT
TTTACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCA
CACGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACA
ATGCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCT
TTAACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAA
TTCGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTT
CAACAAAGACACGACAACGATGACAACGACCCCTACTGCGACCACCTCCA
CAACAACTGAGAAAATCGAACAACTTCCTCACGATATTCACTTTACTTCT
GAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGACAATGATTG
TTCTCACAATGGCCCTTTTCGCTGGTCCCTCCTACTTGTGCAAATGGAAG
CCAAACGGCGCTTTATTCCGCTTGAGAAATGACAAACCACAATATTACGT
TCAATGTTCGAATGGAATCGCTTACTGTAGACAATGTCCTTCACATCAAT
ATTTCAACAACAAATTTTCTGTTTGTGTCAGAAGAACTGTTGCTAAAGAC
TGGTAATTTGTTCAGCCTCCTCATTTTACGAACCTTACAACGATTGTCCA
TCAAGTCTTTGCAAATGGAAACCACACGGTGCAACCTTCAGATTGAGCGA
TAAATTGGCGCCTGTTTTCGTACAATGCAGTCATGGCAACGCTATTTGTT
TGAACTGTCCACATGGTACCATCTTTAACAATCAACATAATGTTTGTGTC
CGAGATCAACGTGGCAGCAAGAAATTCGGACACTTTAACAAGCATGGTCA
CCATGGAGATGAAGTTCACCATTTCAACAAAGACACGACAACGATGACAA
CGACCCCTACTGCGACCACCTCCACAACAACTGAGAAAATCGAACAACTT
CCTCACGATATTCACTTTACTTCTGAAGCAAACTTCAACAAGTGAAAAAC
AACTCAAAATGAAGACAATGATTGTTCTCACAATGGCCCTTTTCGCTGGT
CCCTCCTACTTGTGCAAATGGAAGCCAAACGGCGCTTTATTCCGCTTGAG
AAATGACAAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTACT
GTAGACAATGTCCTTCACATCAATATTTCAACAACAAATTTTCTGTTTGT
GTCAGAAGAACTGTTGCTAAAGACTGGTAATTTGTTCAGCCTCCTCATTT
TACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCACA
CGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACAAT
GCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCTTT
AACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAATT
CGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTTCA
ACAAAGACACGACAACGATGACAACGACCCCTACTGCGACCACCTCCACA
ACAACTGAGAAAATCGAACAACTTCCTCACGATATTCACTTTACTTCTGA
AGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGACAATGATTGTT
CTCACAATGGCCCTTTTCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047242-exon-scaffold_123-1575043694:448833..448915 | TCONS_00047242-exon-scaffold_123-1575043694:448833..448915 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1575043694:448326..448685 | TCONS_00047242-exon-scaffold_123-1575043694:448326..448685 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1575043694:447587..447901 | TCONS_00047242-exon-scaffold_123-1575043694:447587..447901 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1510915933:448833..448915 | TCONS_00047242-exon-scaffold_123-1510915933:448833..448915 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1510915933:448326..448685 | TCONS_00047242-exon-scaffold_123-1510915933:448326..448685 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1510915933:447587..447901 | TCONS_00047242-exon-scaffold_123-1510915933:447587..447901 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1491911889:448833..448915 | TCONS_00047242-exon-scaffold_123-1491911889:448833..448915 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1491911889:448326..448685 | TCONS_00047242-exon-scaffold_123-1491911889:448326..448685 | Clytia hemisphaerica | exon |
| TCONS_00047242-exon-scaffold_123-1491911889:447587..447901 | TCONS_00047242-exon-scaffold_123-1491911889:447587..447901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:447587..448915 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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