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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047241 ID=TCONS_00047241|Name=TCONS_00047241|organism=Clytia hemisphaerica|type=transcript|length=664bp
ATTCAATTAtagttaaaaaagaaattaactTTTGCTAACAATGGGTGATG
CAATTGAGATCAAAACTAATTGGAAAAAGAAATATAGCTTGGATTTAGAA
AGCTCTCTTCTTTCTTGGATACAAGACGTGACTGGTGAAGATTTATCCGA
AATCAAAGGCCACGATCAATTCcgtcaaaaattcaaaacaggtGTCACGC
TTTGTCAACTGATGAATAAAATCAAACCAGGATGTATCAAGACTTATAAC
AAGAATCCGAAATTACCATTTCAACAGATGGAAAATATAGGATTTGTCAA
CCAAGCTATGAGAGAATATGGTGTTCAGAGTGAATATATTTTCGTTACCG
CTGATTTACACCAAGGCAAGAATCTAGTCACTGTACAATTGGGATTAAGA
AATCTTGGTGATAAAGCAACCGCAAATGGATTTCAACCAGCtttcaaatt
atgaaattgtgaaattttcaacaaCAATTCCtcatttgtgattttttttc
tcaatattttagtatccttaacatatttttagaatttaaatgaaatttta
tattatattttactcatatatttttttctgctTTGTAATTGTTGAAACTT
TAGAATTTTATAGTAAATTTAACCTTTTGTTTGTGAGGCTGGTAAATAGA
TGGTGATAATTGAA Run BLAST on NCBI protein sequence of TCONS_00047241-protein >TCONS_00047241-protein ID=TCONS_00047241-protein|Name=TCONS_00047241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MGDAIEIKTNWKKKYSLDLESSLLSWIQDVTGEDLSEIKGHDQFRQKFKT
GVTLCQLMNKIKPGCIKTYNKNPKLPFQQMENIGFVNQAMREYGVQSEYI
FVTADLHQGKNLVTVQLGLRNLGDKATANGFQPAFKL Run BLAST on NCBI transcript from alignment at scaffold_123:426097..427522- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047241 ID=TCONS_00047241|Name=TCONS_00047241|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at scaffold_123:426097..427522- (Clytia hemisphaerica)
ATTCAATTATAGTTAAAAAAGAAATTAACTTTTGCTAACAATGGGTGATG
CAATTGAGATCAAAACTAATTGGAAAAAGAAATATAGCTTGGATTTAGAA
AGCTCTCTTCTTTCTTGGATACAAGGTAAGCTAGTATTATGGAACTTTCA
AAACATCAAGTGTGTCACATGTGAATATAACTGTTATGACCTTGTCTTAG
TAGGCCATGGCTAGATGTACGGGCTCGAAAACCGCAAACTACCAACTAAC
CTGAAAAAGATTATTTTCGCCCGACCAGTCTGCTTAGTCTGCGGGGAGGG
AGGGGGTGCCAAGGTTGCGACAAGTATGTATTGCGTTGCTCGACTTTTTA
CCCTCTTCATGAATTTTACGACCCTTATTGAGACTAATTCATGATCTTCT
GATTGAAATCTTCCTATTGAAACCGACCCTTAGAGGGACTGAAAATTAAT
TTTGTGATTTTCCACATCTGTACGATTCATTCACTTTCCTAGGCACCCCT
TCCCTGGGCTCAGGCTGAAAGTTAACATAAAAATACAGTTTTCTTCTTCA
TTTGTTCCTTTTTAGACGTGACTGGTGAAGATTTATCCGAAATCAAAGGC
CACGATCAATTCCGTCAAAAATTCAAAACAGGTGTCACACTTTGTCAACT
GATGAATAAAATCAATCCAGGATGCATCAAAACTTATAACAAGAATCCGA
AATTACCATTTCAACAAATGGAAAATATAGGATTTGTCAACCAAGCTATG
AGAGAGTATGGCGTTCAGAGTGAATACATTTTCGTTACCGCTGATNATTC
ATTCACTTTCCTAGGCACCCCTTCCCTGGGCTCAGGCTGAAAGTTAACAT
AAAAATACAGTTTTTTTCTTCATTTGTTCCTTTTTAGACGTGACTGGTGA
AGATTTATCCGAAATCAAAGGCCACGATCAATTCCGTCAAAAATTCAAAA
CAGGTGTCACGCTTTGTCAACTGATGAATAAAATCAAACCAGGATGTATC
AAGACTTATAACAAGAATCCGAAATTACCATTTCAACAGATGGAAAATAT
AGGATTTGTCAACCAAGCTATGAGAGAATATGGTGTTCAGAGTGAATATA
TTTTCGTTACCGCTGATTTACACCAAGGCAAGAATCTAGTCACTGTACAA
TTGGGATTAAGAAATCTTGGTGATAAAGCAACCGCAAATGGATTTCAACC
AGCTTTCAAATTATGAAATTGTGAAATTTTCAACAACAATTCCTCATTTG
TGATTTTTTTTCTCAATATTTTAGTATCCTTAACATATTTTTAGAATTTA
AATGAAATTTTATATTATATTTTACTCATATATTTTTTTCTGCTTTGTAA
TTGTTGAAACTTTAGAATTTTATAGTAAATTTAACCTTTTGTTTGTGAGG
CTGGTAAATAGATGGTGATAATTGAA Coding sequence (CDS) from alignment at scaffold_123:426097..427522- >TCONS_00047241 ID=TCONS_00047241|Name=TCONS_00047241|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_123:426097..427522- (Clytia hemisphaerica)
GTGTCACGCTTTGTCAACTGATGAATAAAATCAAACCAGGATGTATCAAG
ACTTATAACAAGAATCCGAAATTACCATTTCAACAGATGGAAAATATAGG
ATTTGTCAACCAAGCTATGAGAGAATATGGTGTTCAGAGTGAATATATTT
TCGTTACCGCTGATTTACACCAAGGCAAGAATCTAGTCACTGTACAATTG
GGATTAAGAAATCTTGGTGATAAAGCAACCGCAAATGGATTTCAACCAGC
TTTCAAATTATGAACGTGACTGGTGAAGATTTATCCGAAATCAAAGGCCA
CGATCAATTCCGTCAAAAATTCAAAACAGATGGGTGATGCAATTGAGATC
AAAACTAATTGGAAAAAGAAATATAGCTTGGATTTAGAAAGCTCTCTTCT
TTCTTGGATACAAGGTGTCACGCTTTGTCAACTGATGAATAAAATCAAAC
CAGGATGTATCAAGACTTATAACAAGAATCCGAAATTACCATTTCAACAG
ATGGAAAATATAGGATTTGTCAACCAAGCTATGAGAGAATATGGTGTTCA
GAGTGAATATATTTTCGTTACCGCTGATTTACACCAAGGCAAGAATCTAG
TCACTGTACAATTGGGATTAAGAAATCTTGGTGATAAAGCAACCGCAAAT
GGATTTCAACCAGCTTTCAAATTATGAACGTGACTGGTGAAGATTTATCC
GAAATCAAAGGCCACGATCAATTCCGTCAAAAATTCAAAACAGATGGGTG
ATGCAATTGAGATCAAAACTAATTGGAAAAAGAAATATAGCTTGGATTTA
GAAAGCTCTCTTCTTTCTTGGATACAAGGTGTCACGCTTTGTCAACTGAT
GAATAAAATCAAACCAGGATGTATCAAGACTTATAACAAGAATCCGAAAT
TACCATTTCAACAGATGGAAAATATAGGATTTGTCAACCAAGCTATGAGA
GAATATGGTGTTCAGAGTGAATATATTTTCGTTACCGCTGATTTACACCA
AGGCAAGAATCTAGTCACTGTACAATTGGGATTAAGAAATCTTGGTGATA
AAGCAACCGCAAATGGATTTCAACCAGCTTTCAAATTATGAACGTGACTG
GTGAAGATTTATCCGAAATCAAAGGCCACGATCAATTCCGTCAAAAATTC
AAAACAGATGGGTGATGCAATTGAGATCAAAACTAATTGGAAAAAGAAAT
ATAGCTTGGATTTAGAAAGCTCTCTTCTTTCTTGGATACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047241-exon-scaffold_123-1575043694:427398..427522 | TCONS_00047241-exon-scaffold_123-1575043694:427398..427522 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1575043694:426892..426957 | TCONS_00047241-exon-scaffold_123-1575043694:426892..426957 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1575043694:426097..426569 | TCONS_00047241-exon-scaffold_123-1575043694:426097..426569 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1510915933:427398..427522 | TCONS_00047241-exon-scaffold_123-1510915933:427398..427522 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1510915933:426892..426957 | TCONS_00047241-exon-scaffold_123-1510915933:426892..426957 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1510915933:426097..426569 | TCONS_00047241-exon-scaffold_123-1510915933:426097..426569 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1491911889:427398..427522 | TCONS_00047241-exon-scaffold_123-1491911889:427398..427522 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1491911889:426892..426957 | TCONS_00047241-exon-scaffold_123-1491911889:426892..426957 | Clytia hemisphaerica | exon |
| TCONS_00047241-exon-scaffold_123-1491911889:426097..426569 | TCONS_00047241-exon-scaffold_123-1491911889:426097..426569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:426097..427522 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00047241 vs. Swiss-Prot (Human)
Match: CNN3 (Calponin-3 OS=Homo sapiens GN=CNN3 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.596e-16 Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 2
Query: 38 TMGDAIEIKTNWKKKYSLDLESSLLSWIQDVTGEDLSEIKGHDQFRQKFKTGVTLCQLMNKIKPGCIKTYNKNPKLPFQQMENIGFVNQAMREYGVQSEYIFVTADLHQGKNLVTVQLGLRNLGDKATANGFQ 436
+ G + E+K KY E L +WI++VTG + F+ K G+ LC+L+NK++PG +K N++ L + Q+ENIG +A++ YG++ IF DL + N+ VQ L L A GF
Sbjct: 9 SYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGP-----NFQLGLKDGIILCELINKLQPGSVKKVNES-SLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFH 135
The following BLAST results are available for this feature:
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