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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047238 ID=TCONS_00047238|Name=TCONS_00047238|organism=Clytia hemisphaerica|type=transcript|length=1802bp
CTGCTGTTAAATGGGAAGAAATTAGGTTCGAATGGTAACAGCAAGGACTT
CTCATCATCCTTCACTTTTTAGAATCAATTAttaaattcttgatattcat
taTGTAATCTTTTCTTTGATTGACACTCCAAATCAAGACATTTGGCAGCT
AATATTCGTGGCAAAACATTTGCATTCTCCAAGGAGAGCTTTTTTTGTCT
CAAGAAAGTAACAGCTCCTCTAACCTCTAACAGCTCTGCCgtatttgaat
gatttttaaattgataaaaatcaacaaagaacTTGCAGGCAGTAAACACT
GTGTAAAATTGTGTATAAGGAACTGTAAGGAAAGCAAACTTAAAAATTTG
AGTTTGGACAATCTCCAAGATTggtgaaaaatcattttttcccaCTTACG
GTTTTcctctttgattttttattggtttcttTATTGATTGCTTGCGTTAT
CAATTATTACTTGTGAGTCATTTCTTGAAATGGAAACACACAGTTTTTGC
CGAGCTGTAAGATAATAAGCGATGTGAATGAAAgtgttttcactttttat
tgcTTATTTATTCATATTTACTAAAACGTGAAACGGCAGGGAAACGAGAA
GAAACAACTTGGAAACGACATGGAAACGACTTGGAAATGACATGGAAACG
ACTTGGAAATGACATGGAAACAACTTGGAAACGAGGGAAACGAAGGGAAA
CGGGAGACAAAACTGAAAAGTATTGGAAACTAAGTCATTTTCCGTCTGGA
AATCAAAGGGATAGGTTGATTTGTCAATATTGGATAGCTTTTTCAATTTA
GAAGATCGTTACTTAAGACAATTACATTCAGCTGGAGGTAGCTTCagtta
ttttcattgtttaactatttttttaaattctgggTGCAAATTATCCTGCA
GGATAACAGGACCACAGCTCCAAATTCATTAAtaatttatctttaaaaaa
aacttgaagtCTGATACTTAGGGTGGGCAATTTATTGATATAGACACACT
TGTAGAATGGTCGAAAGACTGGCTATTACTATTCCATCCTGAAAAGTGTC
ACGTTCTGACGTTAGGAAAGTTTGGAAACATCAAACATGCGCATCCATAT
TCTCTAGATGGACGCCAATTGGAACAcgtctttgaagaaaaagatcttGG
AATCCTCATTGACTCAGAACTTACATTTGAAGAACACATTGCAAAGCAAG
TCAAAAAAGCAAACGCGATACTTGGCATAATCAATCGAGGATTTGTAAAC
ATGAGTACAAGTACATTTAAAACATTGCATTGTACGTAGGCACAACTTTG
AGATGATCCCAAACTTTGGAAGCGATGGACTCAGTGGTGTACAAACGAAT
TCCTTCTTTTATCAAACTATACCAACCTGGAATAAATTGCCAAAAGATGT
CGCTGAAGCAAAGACAGTCAAAGTCTCAAAGAAAGACTCAACACTGCATG
GAGTAAACACCCGAAAAGATTCaacacaagacaattgtaaaatacgtata
gtcacgatcagttccagaggccctcgtgcgcctagaactttgttacatta
taatTATTTCTTAGCTTTAATCACTCCCTGCACTTCATGCTGTATCATAC
CTTaaagaaacttattttggcgggaactaattttggcgttcagcaaaaat
cttaaagacttttaattttggcgggaacttattttgacgagtgagaaaaa
tatttaattttggcgggaactagttttggtaaattttgtctaaattcgcc
aaatccgccaaaattagttcccgctaaaataagttcccttaaggtacgtT
AA Run BLAST on NCBI protein sequence of TCONS_00047238-protein >TCONS_00047238-protein ID=TCONS_00047238-protein|Name=TCONS_00047238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MIPNFGSDGLSGVQTNSFFYQTIPTWNKLPKDVAEAKTVKVSKKDSTLHG
VNTRKDSTQDNCKIRIVTISSRGPRAPRTLLHYNYFLALITPCTSCCIIP Run BLAST on NCBI transcript from alignment at scaffold_123:370995..372881- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047238 ID=TCONS_00047238|Name=TCONS_00047238|organism=Clytia hemisphaerica|type=transcript|length=1887bp|location=Sequence derived from alignment at scaffold_123:370995..372881- (Clytia hemisphaerica)
CTGCTGTTAAATGGGAAGAAATTAGGTTCGAATGGTAACAGCAAGGACTT
CTCATCATCCTTCACTTTTTAGAATCAATTATTAAATTCTTGATATTCAT
TATGTAATCTTTTCTTTGATTGACACTCCAAATCAAGACATTTGGCAGCT
AATATTCGTGGCAAAACATTTGCATTCTCCAAGGAGAGCTTTTTTTGTCT
CAAGAAAGTAACAGCTCCTCTAACCTCTAACAGCTCTGCCGTATTTGAAT
GATTTTTAAATTGATAAAAATCAACAAAGAACTTGCAGGCAGTAAACACT
GTGTAAAATTGTGTATAAGGAACTGTAAGGAAAGCAAACTTAAAAATTTG
AGTTTGGACAATCTCCAAGATTGGTGAAAAATCATTTTTTCCCACTTACG
GTTTTCCTCTTTGATTTTTTATTGGTTTCTTTATTGATTGCTTGCGTTAT
CAATTATTACTTGTGAGTCATTTCTTGAAATGGAAACACACAGTTTTTGC
CGAGCTGTAAGATAATAAGCGATGTGAATGAAAGTGTTTTCACTTTTTAT
TGCTTATTTATTCATATTTACTAAAACGTGAAACGGCAGGGAAACGAGAA
GAAACAACTTGGAAACGACATGGAAACGACTTGGAAATGACATGGAAACG
ACTTGGAAATGACATGGAAACAACTTGGAAACGAGGGAAACGAAGGGAAA
CGGGAGACAAAACTGAAAAGTATTGGAAACTAAGTCATTTTCCGTCTGGA
AATCAAAGGGATAGGTTGATTTGTCAATATTGGATAGCTTTTTCAATTTA
GAAGATCGTTACTTAAGACAATTACATTCAGCTGGAGGTAGCTTCAGTTA
TTTTCATTGTTTAACTATTTTTTTAAATTCTGGGTGCAAATTATCCTGCA
GGATAACAGGACCACAGCTCCAAATTCATTAATAATTTATCTTTAAAAAA
AACTTGAAGTCTGATACTTAGGGTGGGCAATTTATTGATATAGACACACT
TGTAGAATGGTCGAAAGACTGGCTATTACTATTCCATCCTGAAAAGTGTC
ACGTTCTGACGTTAGGAAAGTTTGGAAACATCAAACATGCGCATCCATAT
TCTCTAGATGGACGCCAATTGGAACACGTCTTTGAAGAAAAAGATCTTGG
AATCCTCATTGACTCAGAACTTACATTTGAAGAACACATTGCAAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTGAAGAACACATTGCAAAGCAAGTCAAAAAAGCAAACG
CGATACTTGGCATAATCAATCGAGGATTTGTAAACATGAGTACAAGTACA
TTTAAAACATTGCATTGTACGTAGGCACAACTTTGAGATGATCCCAAACT
TTGGAAGCGATGGACTCAGTGGTGTACAAACGAATTCCTTCTTTTATCAA
ACTATACCAACCTGGAATAAATTGCCAAAAGATGTCGCTGAAGCAAAGAC
AGTCAAAGTCTCAAAGAAAGACTCAACACTGCATGGAGTAAACACCCGAA
AAGATTCAACACAAGACAATTGTAAAATACGTATAGTCACGATCAGTTCC
AGAGGCCCTCGTGCGCCTAGAACTTTGTTACATTATAATTATTTCTTAGC
TTTAATCACTCCCTGCACTTCATGCTGTATCATACCTTAAAGAAACTTAT
TTTGGCGGGAACTAATTTTGGCGTTCAGCAAAAATCTTAAAGACTTTTAA
TTTTGGCGGGAACTTATTTTGACGAGTGAGAAAAATATTTAATTTTGGCG
GGAACTAGTTTTGGTAAATTTTGTCTAAATTCGCCAAATCCGCCAAAATT
AGTTCCCGCTAAAATAAGTTCCCTTAAGGTACGTTAA Coding sequence (CDS) from alignment at scaffold_123:370995..372881- >TCONS_00047238 ID=TCONS_00047238|Name=TCONS_00047238|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_123:370995..372881- (Clytia hemisphaerica)
ATGATCCCAAACTTTGGAAGCGATGGACTCAGTGGTGTACAAACGAATTC
CTTCTTTTATCAAACTATACCAACCTGGAATAAATTGCCAAAAGATGTCG
CTGAAGCAAAGACAGTCAAAGTCTCAAAGAAAGACTCAACACTGCATGGA
GTAAACACCCGAAAAGATTCAACACAAGACAATTGTAAAATACGTATAGT
CACGATCAGTTCCAGAGGCCCTCGTGCGCCTAGAACTTTGTTACATTATA
ATTATTTCTTAGCTTTAATCACTCCCTGCACTTCATGCTGTATCATACCT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047238-exon-scaffold_123-1575043694:371695..372881 | TCONS_00047238-exon-scaffold_123-1575043694:371695..372881 | Clytia hemisphaerica | exon |
| TCONS_00047238-exon-scaffold_123-1575043694:370995..371609 | TCONS_00047238-exon-scaffold_123-1575043694:370995..371609 | Clytia hemisphaerica | exon |
| TCONS_00047238-exon-scaffold_123-1510915933:371695..372881 | TCONS_00047238-exon-scaffold_123-1510915933:371695..372881 | Clytia hemisphaerica | exon |
| TCONS_00047238-exon-scaffold_123-1510915933:370995..371609 | TCONS_00047238-exon-scaffold_123-1510915933:370995..371609 | Clytia hemisphaerica | exon |
| TCONS_00047238-exon-scaffold_123-1491911889:371695..372881 | TCONS_00047238-exon-scaffold_123-1491911889:371695..372881 | Clytia hemisphaerica | exon |
| TCONS_00047238-exon-scaffold_123-1491911889:370995..371609 | TCONS_00047238-exon-scaffold_123-1491911889:370995..371609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:370995..372881 - |
Blast
The following BLAST results are available for this feature:
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