TCONS_00047228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047228
Unique NameTCONS_00047228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047228 ID=TCONS_00047228|Name=TCONS_00047228|organism=Clytia hemisphaerica|type=transcript|length=1599bp
GAGTTGTTTCTGTTAAACAATGAAAACAGAATAATAATGCTCTACTGCGC
ATGTTTGTTTGGTTACTTAGGAAACAGTAAACAAACCCAATAAAATCGAA
CAAAAGAACTGGGAACAAAAAGTCCTTTATGATTGACTTCTACTCAAATA
AAATTCTTTTGTGCAGTCTAAAAGGGATTTGTTTCCCCCAAGAAATTTTG
ACTCTATTTTATGGAAAGTCTGTGGTTGTCTggtaaaaaagatttaataa
aTGGAAGTAACTTTGTGTACAATTAAAATGATGGTTTCAAACCATTAAAC
GGGCCACCTGCGAGCATGTCCATCCAAGCGTTACGAAATTCGTTTCAATT
TGAAGAATATCATACCCAAAGAGAGGAAAACAGAGCGAATCAATTTTTAA
TGCAAACTTTTCAATGTTGCCCAGTGgataaacattgaaaaaaataaatt
tgttcgaaaaatttttttatcaactttGGATCCACTGCCAACCTTTTGAT
TCATCCAATATGTGGCGGTTGCACTTTATGGTGCTTTGCGCCTGTCTAAT
CGGCGCTTTTGCCGTCAAAATGAAGGTTCCAGAACGTGTTGCACCAAAGA
CATCCAAACGAAACGATATTCAACCACGTATGTTGGCACCAGGATACTAC
TCACAAGAATGTAACGCACACAAAGCTTGCCCTGATAaaaaatattgtca
CTTGTTCTTGTGCGTGCACTGCTTGAAAGAGAACGTTGCTTGTACACAAA
ACGGACAGTGTTGTGAAGGACAATGTACTTATGGACGTTGCAAAGCTGGT
GTCGCTGAAGGACAACCAGGAACTTTCTGTGACAGACATGAAGATTGTGC
TGGAGAAGGAAAATTAGCTTGCTGTGTCAGAGAACCAGCCATCAACCCAC
ATATTTCAATCTGTAAACCACCTCTTGCCGAGCATATGGTGTGCGGTCCA
ATCAATTTCTTCAGAAACGTATACGTTGGTGCTCAAGTACAAAAAGCTTG
TGGTCCATGCAAAGAAAAACTCCTCTGTAAACAAGTCGGTTTATTCGGTA
TCCATGAAATTTGCACCAAGGAAGAAGACGTCTAAAAGCATTCAGACACA
TCCGCTAAAATTTCATCATCTACTAACACGCATAACAAACTTTTACACAT
TAAATGCAAcaagagaaaatattattttttctgcaTTTTTGGGACATTAT
GGTTGCTATGCAACATAAACATTATCGACCAATGGCATCCATGgtcttga
ttttttgtacataaagcagtcaatactttttttttacttaaccATCTCGA
CGTAAAGAAAGTATTAGACGACTAAATGTAATTCTCTaacgaattttttt
atattataaatatacgagtttactttttttctttctgtattTTGTCGTAG
CATCATCGATTCCTCCCTTGAGCCTGATACAGTACCTATTCTATATATAA
TATAACTTTTGGAGACGGTAGATAAACGCTTAGTTTCCTTACAGCTTTTG
ATTTCGAAATAATAATCACTTAAAGTTTCATCTtatttttggtataaaaa
attaagttattgtagaaaatatttttattaatgaaataaaataaaaaat
Run BLAST on NCBI

protein sequence of dickkopf protein 3

>TCONS_00047228-protein ID=TCONS_00047228-protein|Name=dickkopf protein 3|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MWRLHFMVLCACLIGAFAVKMKVPERVAPKTSKRNDIQPRMLAPGYYSQE
CNAHKACPDKKYCHLFLCVHCLKENVACTQNGQCCEGQCTYGRCKAGVAE
GQPGTFCDRHEDCAGEGKLACCVREPAINPHISICKPPLAEHMVCGPINF
FRNVYVGAQVQKACGPCKEKLLCKQVGLFGIHEICTKEEDV
Run BLAST on NCBI

transcript from alignment at scaffold_123:82234..85714-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047228 ID=TCONS_00047228|Name=TCONS_00047228|organism=Clytia hemisphaerica|type=transcript|length=3481bp|location=Sequence derived from alignment at scaffold_123:82234..85714- (Clytia hemisphaerica)
GAGTTGTTTCTGTTAAACAATGAAAACAGAATAATAATGCTCTACTGCGC
ATGTTTGTTTGGTTACTTAGGAAACAGTAAACAAACCCAATAAAATCGAA
CAAAAGAACTGGGAACAAAAAGTCCTTTATGATTGACTTCTACTCAAATA
AAATTCTTTTGTGCAGTCTAAAAGGGATTTGTTTCCCCCAAGAAATTTTG
ACTCTATTTTATGGAAAGTCTGTGGTTGTCTGGTAAAAAAGATTTAATAA
ATGGAAGTAACTTTGTGTACAATTAAAATGATGGTTTCAAACCATTAAAC
GGGCCACCTGCGAGCATGTCCATCCAAGCGTTACGAAATTCGTTTCAATT
TGAAGAATATCATACCCAAAGAGAGGAAAACAGAGCGAATCAATTTTTAA
TGCAAACTTTTCAATGTTGCCCAGTGGATAAACATTGAAAAAAATAAATT
TGTTCGAAAAATTTTTTTATCAACTTTGGATCCACTGCCAACCTTTTGAT
TCATCCAATATGTGGCGGTTGCACTTTATGGTGCTTTGCGCCTGTCTAAT
CGGCGCTTTTGCCGTCAAAATGAAGGTAATAAAGTTTATTTGGAATCGAT
GATCAGTTGCCTTACAGTATCCGAGGATATGCTAGATTGTCATGGGTGTG
TTATAATTTTAATGATAGACATTTAGTTAGTGGTATTATATTTTTTGTAG
TTGGGCCACTAGCATCAGTGAATTACATATGTTTGACCACCACGTTTATA
GATGGTTGTTAAAGTATCCATGAGACTGTTACCTTGATTAGTCAGTTCGG
GGGAGATTTTTGTTCGCAAAACCTTCATAAATTTAGGGCTCTTAGTGTAT
TTTATTGAAAGATGTGTACAAAATTAGAGTTGTTACATTTTAAGGCTAAA
GGTCAACTAGAGAAAATTACACAATCTTTGCTAGGAGATCAACTATCACT
TATCAAGTTTGATATACTATAGTGAGATCTACAACTGTTTATGACCAGAC
ATGACCATAAAATAATGACATAGGATAAATTAGACAGTCATTTTGGTAAA
CAAACCCCCTTATATCAGATTCATAACTATTATATTGGAGTCGCGGAGTT
ATATGACGGACACGATAAACACGATTTTAAAGGACAGCTGACTTGTTTGC
CGAGGTATATATTGACTTACAATTTTGCACATTATAGGTTCCAGAACGTG
TTGCACCAAAGACATCCAAACGAAACGATATTCAACCACGTATGTTGGCA
CCAGGATACTACTCACAAGAATGTAACGCACACAAAGCTTGCCCTGATAG
TAAGTCAAAGTGAAATCCCAGCTGGCACACAACGTTTTTTCAACGTTTAT
CTAACGTTCACAACGTCCATATAACGTTACATGAACGTCGAAACAACGTT
GTGTGCCAGCTGGGATATGCATTAAGTCCATGATTCGTGTGCTATTCATG
ATATGCACCACTGAAGAGTCTTCTGAGAACTTTTAAAATCTTCCACCCAA
TACGTCACTTAAACAATAGAAAAAGTAACGTATTGGGTATAAGATTTTAA
AAGTTCTCAGAAGACTCTCCAGTGGTGCGTATCATAAATTCTCCCCTTTG
AGGGAACACTGTCACTATTTATGAATGGTATTAGAACGGTATTTCATCCC
TAATATCAATTCACTAAAATAAGTAATAAACGTTTATTTAGATCGCGTGA
ATTTACCTTGTTTTGGCAGTCTAATCTCATCCTTGGTGAGATCATTGTTC
ATTGCCGGCCACTTTTGACCATCCTAAAATGATTCAAAAGCAATGAAAAC
AAGGCTATGAAGGTCAATCAGAATCGTGTTTCAAACAATTTCATTGCTTT
TTTCAGAAAAATATTGTCACTTGTTCTTGTGCGTGCACTGCTTGAAAGAG
AACGTTGCTTGTACACAAAACGGACAGTGTTGTGAAGGACAATGTACTTA
TGGACGTTGCAAAGCTGGTGTCGCTGAAGGACAACCAGGAACTTTCTGTG
ACAGACATGAAGATTGTGCTGGAGAAGGAAAATTAGCTTGCTGTGTCAGG
TGAGTTAGACAATTTTGTCTCCATCGGGCGCCAATTGTATATTTTTTTAT
CATTATGGTTTTTTTCAATTATTGTCAAACTACGCGTTTCTGATCAGGTA
TTGACAACGCGTTTTTTTGAAAAAATATTTTTAAAGCATGTAAGATGGGC
TGACGTCAAAATTACTTTATCATTAATATCTGAAGCTTAGGTGGGAAATT
AGCATATAATACTGTATTGGTGATCGTTATTGATACAATGTTGATCCGAA
GCTTACCAAACTTTATGTGGACGTTAGTAAGACGTCGTTTTGACGTTTTA
TGTCAGTTGTGAAAAACGATTTAACTTACCCTTGTTGATTTTTCTTTTCC
CACAGAGAACCAGCCATCAACCCACATATTTCAATCTGTAAACCACCTCT
TGCCGAGCATATGGTGTGCGGTCCAATCAATTTCTTCAGAAACGTATACG
TTGGTGCTCAAGTACAAAAAGCTTGTGGTCCATGCAAAGAAAAACTCCTC
TGTAAACAAGTCGGGTAAGTGAAATGACGTCATTGTTATTTCGTTATGTT
TTTTTTGGTTAGTAGTGTTTTAGTATCTAAGACAAAAAGAAGATATTAGT
TCAACTAAAAAGTAGTATTAGAAAAAGGGTAGGTCAAAGTTCCTCTGTAC
CTACTAATCTTAGAAGTAATGTAAGGTTTAGAATTAGAAAAGCTGCTTGC
AGTGATAGCGAAATAGGAGATTCCAAATTTGCTACCTTTATCAAAAATGA
TTACCAAAACTCAACATCGGTATCCCAAACAACCAAGTTTTCTCCCCACT
TGCTACCTAGTAATTAGTTTCATGGTAAGGCAATACTCATGAAGTGTAAC
TTTAATTCCTTTCCTTTTTAGTTTATTCGGTATCCATGAAATTTGCACCA
AGGAAGAAGACGTCTAAAAGCATTCAGACACATCCGCTAAAATTTCATCA
TCTACTAACACGCATAACAAACTTTTACACATTAAATGCAACAAGAGAAA
ATATTATTTTTTCTGCATTTTTGGGACATTATGGTTGCTATGCAACATAA
ACATTATCGACCAATGGCATCCATGGTCTTGATTTTTTGTACATAAAGCA
GTCAATACTTTTTTTTTACTTAACCATCTCGACGTAAAGAAAGTATTAGA
CGACTAAATGTAATTCTCTAACGAATTTTTTTATATTATAAATATACGAG
TTTACTTTTTTTCTTTCTGTATTTTGTCGTAGCATCATCGATTCCTCCCT
TGAGCCTGATACAGTACCTATTCTATATATAATATAACTTTTGGAGACGG
TAGATAAACGCTTAGTTTCCTTACAGCTTTTGATTTCGAAATAATAATCA
CTTAAAGTTTCATCTTATTTTTGGTATAAAAAATTAAGTTATTGTAGAAA
ATATTTTTATTAATGAAATAAAATAAAAAAT

Coding sequence (CDS) from alignment at scaffold_123:82234..85714-

>TCONS_00047228 ID=TCONS_00047228|Name=TCONS_00047228|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_123:82234..85714- (Clytia hemisphaerica)
TTTATTCGGTATCCATGAAATTTGCACCAAGGAAGAAGACGTCTAAAGAA
CCAGCCATCAACCCACATATTTCAATCTGTAAACCACCTCTTGCCGAGCA
TATGGTGTGCGGTCCAATCAATTTCTTCAGAAACGTATACGTTGGTGCTC
AAGTACAAAAAGCTTGTGGTCCATGCAAAGAAAAACTCCTCTGTAAACAA
GTCGGAAAAATATTGTCACTTGTTCTTGTGCGTGCACTGCTTGAAAGAGA
ACGTTGCTTGTACACAAAACGGACAGTGTTGTGAAGGACAATGTACTTAT
GGACGTTGCAAAGCTGGTGTCGCTGAAGGACAACCAGGAACTTTCTGTGA
CAGACATGAAGATTGTGCTGGAGAAGGAAAATTAGCTTGCTGTGTCAGGT
TCCAGAACGTGTTGCACCAAAGACATCCAAACGAAACGATATTCAACCAC
GTATGTTGGCACCAGGATACTACTCACAAGAATGTAACGCACACAAAGCT
TGCCCTGATAATGTGGCGGTTGCACTTTATGGTGCTTTGCGCCTGTCTAA
TCGGCGCTTTTGCCGTCAAAATGAAGTTTATTCGGTATCCATGAAATTTG
CACCAAGGAAGAAGACGTCTAAAGAACCAGCCATCAACCCACATATTTCA
ATCTGTAAACCACCTCTTGCCGAGCATATGGTGTGCGGTCCAATCAATTT
CTTCAGAAACGTATACGTTGGTGCTCAAGTACAAAAAGCTTGTGGTCCAT
GCAAAGAAAAACTCCTCTGTAAACAAGTCGGAAAAATATTGTCACTTGTT
CTTGTGCGTGCACTGCTTGAAAGAGAACGTTGCTTGTACACAAAACGGAC
AGTGTTGTGAAGGACAATGTACTTATGGACGTTGCAAAGCTGGTGTCGCT
GAAGGACAACCAGGAACTTTCTGTGACAGACATGAAGATTGTGCTGGAGA
AGGAAAATTAGCTTGCTGTGTCAGGTTCCAGAACGTGTTGCACCAAAGAC
ATCCAAACGAAACGATATTCAACCACGTATGTTGGCACCAGGATACTACT
CACAAGAATGTAACGCACACAAAGCTTGCCCTGATAATGTGGCGGTTGCA
CTTTATGGTGCTTTGCGCCTGTCTAATCGGCGCTTTTGCCGTCAAAATGA
AGTTTATTCGGTATCCATGAAATTTGCACCAAGGAAGAAGACGTCTAAAG
AACCAGCCATCAACCCACATATTTCAATCTGTAAACCACCTCTTGCCGAG
CATATGGTGTGCGGTCCAATCAATTTCTTCAGAAACGTATACGTTGGTGC
TCAAGTACAAAAAGCTTGTGGTCCATGCAAAGAAAAACTCCTCTGTAAAC
AAGTCGGAAAAATATTGTCACTTGTTCTTGTGCGTGCACTGCTTGAAAGA
GAACGTTGCTTGTACACAAAACGGACAGTGTTGTGAAGGACAATGTACTT
ATGGACGTTGCAAAGCTGGTGTCGCTGAAGGACAACCAGGAACTTTCTGT
GACAGACATGAAGATTGTGCTGGAGAAGGAAAATTAGCTTGCTGTGTCAG
GTTCCAGAACGTGTTGCACCAAAGACATCCAAACGAAACGATATTCAACC
ACGTATGTTGGCACCAGGATACTACTCACAAGAATGTAACGCACACAAAG
CTTGCCCTGATAATGTGGCGGTTGCACTTTATGGTGCTTTGCGCCTGTCT
AATCGGCGCTTTTGCCGTCAAAATGAAGTTTATTCGGTATCCATGAAATT
TGCACCAAGGAAGAAGACGTCTAAAGAACCAGCCATCAACCCACATATTT
CAATCTGTAAACCACCTCTTGCCGAGCATATGGTGTGCGGTCCAATCAAT
TTCTTCAGAAACGTATACGTTGGTGCTCAAGTACAAAAAGCTTGTGGTCC
ATGCAAAGAAAAACTCCTCTGTAAACAAGTCGGAAAAATATTGTCACTTG
TTCTTGTGCGTGCACTGCTTGAAAGAGAACGTTGCTTGTACACAAAACGG
ACAGTGTTGTGAAGGACAATGTACTTATGGACGTTGCAAAGCTGGTGTCG
CTGAAGGACAACCAGGAACTTTCTGTGACAGACATGAAGATTGTGCTGGA
GAAGGAAAATTAGCTTGCTGTGTCAGGTTCCAGAACGTGTTGCACCAAAG
ACATCCAAACGAAACGATATTCAACCACGTATGTTGGCACCAGGATACTA
CTCACAAGAATGTAACGCACACAAAGCTTGCCCTGATAATGTGGCGGTTG
CACTTTATGGTGCTTTGCGCCTGTCTAATCGGCGCTTTTGCCGTCAAAAT
GAAGTTTATTCGGTATCCATGAAATTTGCACCAAGGAAGAAGACGTCTAA
AGAACCAGCCATCAACCCACATATTTCAATCTGTAAACCACCTCTTGCCG
AGCATATGGTGTGCGGTCCAATCAATTTCTTCAGAAACGTATACGTTGGT
GCTCAAGTACAAAAAGCTTGTGGTCCATGCAAAGAAAAACTCCTCTGTAA
ACAAGTCGGAAAAATATTGTCACTTGTTCTTGTGCGTGCACTGCTTGAAA
GAGAACGTTGCTTGTACACAAAACGGACAGTGTTGTGAAGGACAATGTAC
TTATGGACGTTGCAAAGCTGGTGTCGCTGAAGGACAACCAGGAACTTTCT
GTGACAGACATGAAGATTGTGCTGGAGAAGGAAAATTAGCTTGCTGTGTC
AGGTTCCAGAACGTGTTGCACCAAAGACATCCAAACGAAACGATATTCAA
CCACGTATGTTGGCACCAGGATACTACTCACAAGAATGTAACGCACACAA
AGCTTGCCCTGATAATGTGGCGGTTGCACTTTATGGTGCTTTGCGCCTGT
CTAATCGGCGCTTTTGCCGTCAAAATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030083XLOC_030083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047228-exon-scaffold_123-1575043694:85140..85714TCONS_00047228-exon-scaffold_123-1575043694:85140..85714Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1575043694:84416..84527TCONS_00047228-exon-scaffold_123-1575043694:84416..84527Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1575043694:83666..83858TCONS_00047228-exon-scaffold_123-1575043694:83666..83858Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1575043694:83151..83309TCONS_00047228-exon-scaffold_123-1575043694:83151..83309Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1575043694:82234..82793TCONS_00047228-exon-scaffold_123-1575043694:82234..82793Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1510915933:85140..85714TCONS_00047228-exon-scaffold_123-1510915933:85140..85714Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1510915933:84416..84527TCONS_00047228-exon-scaffold_123-1510915933:84416..84527Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1510915933:83666..83858TCONS_00047228-exon-scaffold_123-1510915933:83666..83858Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1510915933:83151..83309TCONS_00047228-exon-scaffold_123-1510915933:83151..83309Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1510915933:82234..82793TCONS_00047228-exon-scaffold_123-1510915933:82234..82793Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1491911889:85140..85714TCONS_00047228-exon-scaffold_123-1491911889:85140..85714Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1491911889:84416..84527TCONS_00047228-exon-scaffold_123-1491911889:84416..84527Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1491911889:83666..83858TCONS_00047228-exon-scaffold_123-1491911889:83666..83858Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1491911889:83151..83309TCONS_00047228-exon-scaffold_123-1491911889:83151..83309Clytia hemisphaericaexon
TCONS_00047228-exon-scaffold_123-1491911889:82234..82793TCONS_00047228-exon-scaffold_123-1491911889:82234..82793Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
dickkopf protein 3TCONS_00047228-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:82234..85714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.3089	4.40544	4.99954	6.13529	18.277	12.838	119.215	126.999	52.8242	35.6462	124.484	142.924	261.414	213.342	178.309	434.063	222.817	224.668	0.271321	0.624619	143.747	150.292	127.858	122.92	133.044	173.718	24.9185	7.35808	0.99152	1.96268
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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