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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047223 ID=TCONS_00047223|Name=TCONS_00047223|organism=Clytia hemisphaerica|type=transcript|length=3548bp
CTGAGGTAAACTTACATTAGGTTGGTGATTGCgataaatttacaatttct
ttGGGATCCTTGATTTTTGTGCTTCGATAGATGAATCAGCGTGCCCTGGG
AATCCCATGGTTGTAAACCCTGGGTGTGTGACTGGATGTCCTAACATTGA
TCCTGTAGATGATGGTTCTTGAGAAAAAGCCATGTTTCGTTTGGTACCGG
TGACATCTTTCGTTGATTCAGCAGCTGGAATTCGTGAGCGTGCGAACTGT
GTTAAAGGTGCACCGTGGGGTGATGTGAATCCAGCCACGCCACCCATGCC
GCCCATTCCGTATCCGAGGCGATAATTGTCGCCACTTGCGTATCCGTAAC
CAACATGGATGGTTTGTTTTTTGGTTTGTCGTCTTGGGATAGCACTCTTC
TTTGTATCTTTAGAAGCAGTATCCTTGGTAGATTTGGATGCTGAGCTATC
TTTGGATGTcactttcttttctttgagTTTGGATCCAGGGACCTTATTCT
TGATCCAAGGCCATCCCCATCCCCAGAGTCCCGTACCGACTCCTGGATAT
CCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATGGGAACGCA
GAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTTTCT
CAACTTGATCTTTACAATGGTAAGCTTGAAGATGAGCGCCACGACCGAAG
CTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCATCT
ACCTCGGCAACCGCCTGCGTGATGGCCACAACCACCACATCCACCGCATC
CACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTTCTCCA
AAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGGTAGGC
AGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTTGGCTG
CACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTCTGGCG
TAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCAATGTA
GACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATGACGAA
CACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGCATTTA
TGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAATGTCC
ATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGGGCCGC
AACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCAAGG
CCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCGTATCC
ACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCACCGA
GTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAAGGA
TAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACGGCC
ATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAATAAC
GGAACGAATGCGTGTTATGANATAAGCTTGAAGATGGGCGCCATGACCGA
AGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCAT
CTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCCACCGCA
TCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTTCTC
CAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGGTAG
GCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTTGGC
TGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTCTGG
CGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCAATG
TAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATGACG
AACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGCATT
TATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAATGT
CCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGGGCC
GCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCAA
GGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCGTAT
CCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCACC
GAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAAG
GATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACGG
CCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAATA
ACGGAACGAATGCGTGTTATGATCCCAGTCAGACCAATCATCCCCGAAAT
GGTCATATCCGAAACTCCATGGGCCTTGGATGCGATGATCATGGTTATCA
TGCCCTGAACCATGATCACTAAAATGGTACCCACCGTGTCCAGTTGTTCC
CAAATGGCATCCACATCTCTTGGTGACCTTTGGATCTTTGGATTTGCAAC
AGTCAGGGATTTTGCTCTTGTAGTGACCACCAACGTGTCCACCACAACCA
CCGTGTCCACATCCACCATGGCCGTTTCCGCCATATCCATGACCTCCATA
GCCACCATATCCTCCTCCGCAGCCACCATGACCGCAACCACCGCCATTTC
CTCCGTAGCCTCCGTTGCCGCCACCGTATCCACCCAAACCGCCGCCATAA
CCGCCACCGTATCCACCCAAACCACCGCCATAGCCGCCACCGTAGCCACC
ACCGTGACCGCCGTGTAAGCCATGGTGACCCCATTGCCAGCCACCACCAT
CACCAATAGCGTGAGGGTGTCCCCAGTGGGAGTGACCCCAACCTCCCCAG
TGATCTCCAACTAACCACCATTTCTTGGAAGCATCTTCACCGTCAGTGGC
ATCTTCAGCTTTTTGAGGGGTAGCagttttggttttggttttgtCAACTT
TCTCACGTTTGTATCCGCCGCCGCCACCGTGGTGACCACCGTGATGATGT
CCGTGCTCACCGTGATGTCCTCCTTCGTGGTGTCCATGATGTTCACCTTC
ATGACCACCATGCTCTCCCCATTCTTCATAGAATTCATAACCATGATCAT
GATGTTGGTGACCGTGATGATGATTGTCGTGTTCGTGATGACCGTGTTGG
CCTTCGTGACCACCTTCGTCTCCGTGATGGCCACCACCCTCATGTCCACC
GCCGAAATCCCTCTTGGCAGCATCATCAGTGTTGTCCTCAGTATCTGCGA
CATCGTCTGACGATTCTTCAGATGCTTCGGCGTCCTGATTAAGAAAGATA
GAAGATTTACAGTGTTTACAGTACactgtttttcattttccttgacaAGT
CATAAGGGAAAGCAATACTTGAAAATGAGGCTAAAAAGGGGTCCTTAC Run BLAST on NCBI transcript from alignment at scaffold_123:61441..65891- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047223 ID=TCONS_00047223|Name=TCONS_00047223|organism=Clytia hemisphaerica|type=transcript|length=4451bp|location=Sequence derived from alignment at scaffold_123:61441..65891- (Clytia hemisphaerica)
CTGAGGTAAACTTACATTAGGTTGGTGATTGCGATAAATTTACAATTTCT
TTGGGATCCTTGATTTTTGTGCTTCGATAGATGAATCAGCGTGCCCTGGG
AATCCCATGGTTGTAAACCCTGGGTGTGTGACTGGATGTCCTAACATTGA
TCCTGTAGATGATGGTTCTTGAGAAAAAGCCATGTTTCGTTTGGTACCGG
TGACATCTTTCGTTGATTCAGCAGCTGGAATTCGTGAGCGTGCGAACTGT
GTTAAAGGTGCACCGTGGGGTGATGTGAATCCAGCCACGCCACCCATGCC
GCCCATTCCGTATCCGAGGCGATAATTGTCGCCACTTGCGTATCCGTAAC
CAACATGGATGGTTTGTTTTTTGGTTTGTCGTCTTGGGATAGCACTCTTC
TTTGTATCTTTAGAAGCAGTATCCTTGGTAGATTTGGATGCTGAGCTATC
TTTGGATGTCACTTTCTTTTCTTTGAGTTTGGATCCAGGGACCTTATTCT
TGATCCAAGGCCATCCCCATCCCCAGAGTCCCGTACCGACTCCTGGATAT
CCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATGGGAACGCA
GAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTTTCT
CAACTTGATCTTTACAATGGTAAGCTTGAAGATGAGCGCCACGACCGAAG
CTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCATCT
ACCTCGGCAACCGCCTGCGTGATGGCCACAACCACCACATCCACCGCATC
CACCACCGTGACCCTGACCGTGACCTTCTCCCCAAGAATGATGACCGTGA
CCACCCCACCAGTCTCCCCACCATGGGTAGGCAGACCATGGACCATAGTT
GGCATATGGATAGAACACGCCTTGTTTGGCTGCACCAGTCTCTGTGTTTT
CTTCTTCAGGAGTAGGAATATCAGCTCTGGCGTAACATCTGTTGTGTCCG
AATTTGTGTGCACTGGTATCGCAATCAATGTAGACGTGAGCTGGTCGATG
AACAACAGGTAAGTACAATGGATGATGGCGAACACTCTTGCACAGACATC
GTGATCCACCGCTTGGTAGATCGTGGCATTTATGACAAACACGGTAGTTG
TCGAATTTGCGTACTGGCCATCCGGAATGTCCATATACACCGTAATTGTT
CAAGCCACCACCAAGAGCGAAACCAGGGCCGCAACCGCAACCACCGGCAT
TGCATCCACAACCTCCGACAGCGCCACCAAGGCCAAACCCACCAGATCCT
GCACCATATCCACCACCCAATCCACCGTATCCACCACCGAGTCCACCATA
TCCACCACCGAGTCCTCCGTATCCACCACCGAGTCNTCCAGGGACCTTAT
TCTTGATCCAAGGCCATCCCCATCCCCATAGTCCCGTACCGACTCCTGGA
TATCCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATGGGAAC
GCAGAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTT
TCTCAACTTGATCTTTACAATGATAAGCTTGAAGATGAGCGCCATGACCG
AAGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCA
TCTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCCACCGC
ATCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTTCT
CCAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGGTA
GGCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTTGG
CTGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTCTG
GCGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCAAT
GTAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATGAC
GAACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGCAT
TTATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAATG
TCCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGGGC
CGCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCA
AGGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCGTA
TCCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCAC
CGAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAA
GGATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACG
GCCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAAT
AACGGAACGAATGCGTGTTATGANATAAGCTTGAAGATGGGCGCCATGAC
CGAAGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAG
CATCTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCCACC
GCATCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTT
CTCCAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGG
TAGGCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTT
GGCTGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTC
TGGCGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCA
ATGTAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATG
ACGAACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGC
ATTTATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAA
TGTCCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGG
GCCGCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCAC
CAAGGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCG
TATCCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACC
ACCGAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAG
AAGGATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCA
CGGCCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAA
ATAACGGAACGAATGCGTGTTATGATCCCAGTCAGACCAATCATCCCCGA
AATGGTCATATCCGAAACTCCATGGGCCTTGGATGCGATGATCATGGTTA
TCATGCCCTGAACCATGATCACTAAAATGGTACCCACCGTGTCCAGTTGT
TCCCAAATGGCATCCACATCTCTTGGTGACCTTTGGATCTTTGGATTTGC
AACAGTCAGGGATTTTGCTCTTGTAGTGACCACCAACGTGTCCACCACAA
CCACCGTGTCCACATCCACCATGGCCGTTTCCGCCATATCCATGACCTCC
ATAGCCACCATATCCTCCTCCGCAGCCACCATGACCGCAACCACCGCCAT
TTCCTCCGTAGCCTCCGTTGCCGCCACCGTATCCACCCAAACCGCCGCCA
TAACCGCCACCGTATCCACCCAAACCACCGCCATAGCCGCCACCGTAGCC
ACCACCGTGACCGCCGTGTAAGCCATGGTGACCCCATTGCCAGCCACCAC
CATCACCAATAGCGTGAGGGTGTCCCCAGTGGGAGTGACCCCAACCTCCC
CAGTGATCTCCAACTAACCACCATTTCTTGGAAGCATCTTCACCGTCAGT
GGCATCTTCAGCTTTTTGAGGGGTAGCAGTTTTGGTTTTGGTTTTGTCAA
CTTTCTCACGTTTGTATCCGCCGCCGCCACCGTGGTGACCACCGTGATGA
TGTCCGTGCTCACCGTGATGTCCTCCTTCGTGGTGTCCATGATGTTCACC
TTCATGACCACCATGCTCTCCCCATTCTTCATAGAATTCATAACCATGAT
CATGATGTTGGTGACCGTGATGATGATTGTCGTGTTCGTGATGACCGTGT
TGGCCTTCGTGACCACCTTCGTCTCCGTGATGGCCACCACCCTCATGTCC
ACCGCCGAAATCCCTCTTGGCAGCATCATCAGTGTTGTCCTCAGTATCTG
CGACATCGTCTGACGATTCTTCAGATGCTTCGGCGTCCTGATTAAGAAAG
ATAGAAGATTTACAGTGTTTACAGTACACTGTTTTTCATTTTCCTTGACA
AGTCATAAGGGAAAGCAATACTTGAAAATGAGGCTAAAAAGGGGTCCTTA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047223-exon-scaffold_123-1575043694:65104..65891 | TCONS_00047223-exon-scaffold_123-1575043694:65104..65891 | Clytia hemisphaerica | exon |
| TCONS_00047223-exon-scaffold_123-1575043694:61441..64200 | TCONS_00047223-exon-scaffold_123-1575043694:61441..64200 | Clytia hemisphaerica | exon |
| TCONS_00047223-exon-scaffold_123-1510915933:65104..65891 | TCONS_00047223-exon-scaffold_123-1510915933:65104..65891 | Clytia hemisphaerica | exon |
| TCONS_00047223-exon-scaffold_123-1510915933:61441..64200 | TCONS_00047223-exon-scaffold_123-1510915933:61441..64200 | Clytia hemisphaerica | exon |
| TCONS_00047223-exon-scaffold_123-1491911889:65104..65891 | TCONS_00047223-exon-scaffold_123-1491911889:65104..65891 | Clytia hemisphaerica | exon |
| TCONS_00047223-exon-scaffold_123-1491911889:61441..64200 | TCONS_00047223-exon-scaffold_123-1491911889:61441..64200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:61441..65891 - |
Blast
The following BLAST results are available for this feature:
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