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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047219 ID=TCONS_00047219|Name=TCONS_00047219|organism=Clytia hemisphaerica|type=transcript|length=1073bp AAAGCTATTACTGCGAAACTACCGATGATGATGATTTGGACTTTCTTCGT TTTTGCCACCGTCATGTTGATGTCCAAATGCAGCGGACTTGGATTAAGTT ACATCTACTACGACGAAATGGCACAAACTTATTGCGCAAGTCGATTATCG CGACCTGGCTTTGTGTTTGCTATCCGAAGAGATTGCCAAGGAACAGCTCC CACCTGCAACGCCTTGTGTCAGAAAGTGAAAGCAGCTGCACTCAAGAGTA TCAACTACCAACGAAGAAACTTTGGATGTTTTGATGCTATCCATATCCGT AAAGAACACACCCAACTCGCCATTGACACAAGCGGACGTCAACCAGACGC TGGGAAAATAAGTCAAATGACATATGGCTATGGTAAAGGCGGATGTCCCT GGAAACCAAACCATTGTGGACCCAACTTCTGCTGTTGCGCAGCAACATAA TGTAATGATCATTGTTAAACTATTattattttgctttattttatcaatat ttttagtATATGACAGATGATTAaatcttttcttattttcaatttaaaaa tgtaaaatttcaatcTCTCTTTAAAAGAATAGAAGATGAAAGCAAAATAC CTTAACGTTATAGGTGCTGCatgaaaaaaaggttttacTTTTGCTAAACT TAAAAAAGGAAAAGTCTTAAAATACAGTAGGTAATATACAAAACCTTTCT AGGTTTTCTATGGCTTCATAAAATCAATCTTAAATCGTGATAAAGTAAAT TGTAAACGAaattcaatgttatttttttgaggaaaaaatgaggaaaaaat gattaaaaaatgagATAATGAGTTATTGATTTGTCCCTCCAGAAATGAAC ATGAACTTTTATAATGTGAAGTCATACCTGTTATAGCCAAAGATGATCGT CAATGCAAAAATAATAGATGCAGCGGCAAGGAAAATATAGCTGTATGTAG ATGTCGGGTATTTGATGACCGAATGGATGAAACGGCTATAAttacctgaa aataaaatagaGATAAACATGTCATGTCTTCCACGATAAAACGTCCAGTG TGATAAAACGtcctgtgtttttt Run BLAST on NCBI protein sequence of TCONS_00047219-protein >TCONS_00047219-protein ID=TCONS_00047219-protein|Name=TCONS_00047219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
KAITAKLPMMMIWTFFVFATVMLMSKCSGLGLSYIYYDEMAQTYCASRLS RPGFVFAIRRDCQGTAPTCNALCQKVKAAALKSINYQRRNFGCFDAIHIR KEHTQLAIDTSGRQPDAGKISQMTYGYGKGGCPWKPNHCGPNFCCCAAT Run BLAST on NCBI transcript from alignment at scaffold_123:20116..21694- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047219 ID=TCONS_00047219|Name=TCONS_00047219|organism=Clytia hemisphaerica|type=transcript|length=1579bp|location=Sequence derived from alignment at scaffold_123:20116..21694- (Clytia hemisphaerica) AAAGCTATTACTGCGAAACTACCGATGATGATGATTTGGACTTTCTTCGT
TTTTGCCACCGTCATGTTGATGTCCAAATGCAGCGGACTTGGATTAAGTT
ACATCTACTACGACGAAATGGCACAAACTTATTGCGCAAGTCGATTATCG
CGACCTGGCTTTGTGTTTGCTATCCGAAGAGATTGCCAAGGAACAGCTCC
CACCTGCAACGCCTTGTGTCAGAAAGTGAAAGCAGCTGCACTCAAGAGTA
TCAACTACCAACGAAGAAAGTATGATGACCTATTTGATTCTTTTCAATTA
CCTCCTTAGACAAAGCTACTGCTTTTAACCAGAAAATCGACCAAAAGAAC
AGTCTATTCATTTTGGAGCAATAAACTCTAAACAGGTCTGACCACGCTAT
CTTTTATAAAACACTAGGTAAAACCATAATCAATAGAACAAATAATAACA
AAGACATTCAATTGACATTGATAGAACTTCTTATCCTCTTCACATAGAAG
AAAAATAATGTGCCATAATGCTGAAAGTAGACTGCAGTTAACTAACAAGC
ATTTTATGCGATTAAAATAAATGATAAGCATGGCGGGAAGCGCAGTGATA
AGACAATTTTCTGGAATTTAAATGGTCTAAAGTCTACTTTTTGTAAAGAT
GGCACATTATTTGCTTCGCCTGCTGTGGCTTGAAAAAGATAGAGGAAGTT
CTACGGGCAGCCTGTGGATACTCTATGCGTTGTAAAAAATTATTTATTTT
AAAATTTAAAATTATTTTATTGCAGCTTTGGATGTTTTGATGCTATCCAT
ATCCGTAAAGAACACACCCAACTCGCCATTGACACAAGCGGACGTCAACC
AGACGCTGGGAAAATAAGTCAAATGACATATGGCTATGGTAAAGGCGGAT
GTCCCTGGAAACCAAACCATTGTGGACCCAACTTCTGCTGTTGCGCAGCA
ACATAATGTAATGATCATTGTTAAACTATTATTATTTTGCTTTATTTTAT
CAATATTTTTAGTATATGACAGATGATTAAATCTTTTCTTATTTTCAATT
TAAAAATGTAAAATTTCAATCTCTCTTTAAAAGAATAGAAGATGAAAGCA
AAATACCTTAACGTTATAGGTGCTGCATGAAAAAAAGGTTTTACTTTTGC
TAAACTTAAAAAAGGAAAAGTCTTAAAATACAGTAGGTAATATACAAAAC
CTTTCTAGGTTTTCTATGGCTTCATAAAATCAATCTTAAATCGTGATAAA
GTAAATTGTAAACGAAATTCAATGTTATTTTTTTGAGGAAAAAATGAGGA
AAAAATGATTAAAAAATGAGATAATGAGTTATTGATTTGTCCCTCCAGAA
ATGAACATGAACTTTTATAATGTGAAGTCATACCTGTTATAGCCAAAGAT
GATCGTCAATGCAAAAATAATAGATGCAGCGGCAAGGAAAATATAGCTGT
ATGTAGATGTCGGGTATTTGATGACCGAATGGATGAAACGGCTATAATTA
CCTGAAAATAAAATAGAGATAAACATGTCATGTCTTCCACGATAAAACGT
CCAGTGTGATAAAACGTCCTGTGTTTTTT Coding sequence (CDS) from alignment at scaffold_123:20116..21694- >TCONS_00047219 ID=TCONS_00047219|Name=TCONS_00047219|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_123:20116..21694- (Clytia hemisphaerica) CTTTGGATGTTTTGATGCTATCCATATCCGTAAAGAACACACCCAACTCG CCATTGACACAAGCGGACGTCAACCAGACGCTGGGAAAATAAGTCAAATG ACATATGGCTATGGTAAAGGCGGATGTCCCTGGAAACCAAACCATTGTGG ACCCAACTTCTGCTGTTGCGCAGCAACATAAAAAGCTATTACTGCGAAAC TACCGATGATGATGATTTGGACTTTCTTCGTTTTTGCCACCGTCATGTTG ATGTCCAAATGCAGCGGACTTGGATTAAGTTACATCTACTACGACGAAAT GGCACAAACTTATTGCGCAAGTCGATTATCGCGACCTGGCTTTGTGTTTG CTATCCGAAGAGATTGCCAAGGAACAGCTCCCACCTGCAACGCCTTGTGT CAGAAAGTGAAAGCAGCTGCACTCAAGAGTATCAACTACCAACGAAGAAA CTTTGGATGTTTTGATGCTATCCATATCCGTAAAGAACACACCCAACTCG CCATTGACACAAGCGGACGTCAACCAGACGCTGGGAAAATAAGTCAAATG ACATATGGCTATGGTAAAGGCGGATGTCCCTGGAAACCAAACCATTGTGG ACCCAACTTCTGCTGTTGCGCAGCAACATAAAAAGCTATTACTGCGAAAC TACCGATGATGATGATTTGGACTTTCTTCGTTTTTGCCACCGTCATGTTG ATGTCCAAATGCAGCGGACTTGGATTAAGTTACATCTACTACGACGAAAT GGCACAAACTTATTGCGCAAGTCGATTATCGCGACCTGGCTTTGTGTTTG CTATCCGAAGAGATTGCCAAGGAACAGCTCCCACCTGCAACGCCTTGTGT CAGAAAGTGAAAGCAGCTGCACTCAAGAGTATCAACTACCAACGAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047219-exon-scaffold_123-1575043694:21426..21694 | TCONS_00047219-exon-scaffold_123-1575043694:21426..21694 | Clytia hemisphaerica | exon |
TCONS_00047219-exon-scaffold_123-1575043694:20116..20919 | TCONS_00047219-exon-scaffold_123-1575043694:20116..20919 | Clytia hemisphaerica | exon |
TCONS_00047219-exon-scaffold_123-1510915933:21426..21694 | TCONS_00047219-exon-scaffold_123-1510915933:21426..21694 | Clytia hemisphaerica | exon |
TCONS_00047219-exon-scaffold_123-1510915933:20116..20919 | TCONS_00047219-exon-scaffold_123-1510915933:20116..20919 | Clytia hemisphaerica | exon |
TCONS_00047219-exon-scaffold_123-1491911889:21426..21694 | TCONS_00047219-exon-scaffold_123-1491911889:21426..21694 | Clytia hemisphaerica | exon |
TCONS_00047219-exon-scaffold_123-1491911889:20116..20919 | TCONS_00047219-exon-scaffold_123-1491911889:20116..20919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_123 | supercontig | scaffold_123:20116..21694 - |
Blast
The following BLAST results are available for this feature:
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