TCONS_00047218 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047218
Unique Name	TCONS_00047218
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	543

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_123:515487..519268+

transcript sequence

>TCONS_00047218 ID=TCONS_00047218|Name=TCONS_00047218|organism=Clytia hemisphaerica|type=transcript|length=543bp
TTTTACACACATAATCATCGTGTTTTTCTTGAAACTAGAAGCCTTGAGAA
GTCTCTGAATCCAAGTTTGAGTTTGGAAAGAagttttttcactcaaaaaa
tgatcactttgtcaatttttgacaCTAATTTAAAAGTGTACGATACCATA
GCCTGGCAAAAATAAGATTGAGATCCTAAACGAATTTTACTGGAGCTggt
tttggcatttttggaaagcCAAATAGATGAGGATCAAGacacaaaaagaa
agaaaatgttctaAGCAGAGGTTTAAAAGATTCAACTGGAGAAAGTTGGG
AGATATTTAGACAGAATTGTTGCAAAATAACGGATTTGGCATGGATGCAA
ATGATGCCATCAGCTTATTCATTGATGCGTGGAGACTTTCGAGGCCTTGC
TCGCCATACAGTCCAAACGGTGCATGCCACTTGCGCAAAAAAGGGATAAC
ATGTTCCTCCAACATATGAAGCTTTGGTGTTATTGTTTGGTTCTTAAAGA
TATCACGATAGCTTCAAGCTCAATTGTCACTGGTGCACTTGAT

Run BLAST on NCBI

transcript from alignment at scaffold_123:515487..519268+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047218 ID=TCONS_00047218|Name=TCONS_00047218|organism=Clytia hemisphaerica|type=transcript|length=3782bp|location=Sequence derived from alignment at scaffold_123:515487..519268+ (Clytia hemisphaerica)
TTTTACACACATAATCATCGTGTTTTTCTTGAAACTAGAAGCCTTGAGAA
GTCTCTGAATCCAAGTTTGAGTTTGGAAAGAagttttttcactcaaaaaa
tgatcactttgtcaatttttgacaCTAATTTAAAAGTGTACGATACCATA
GCCTGGCAAAAATAAGATTGAGATCCTAAACGAATTTTACTGGAGCTggt
tttggcatttttggaaagcCAAATAGATGAGGATCAAGacacaaaaagaa
agaaaatgttctaAGCAGAGGTTTAAAAGATTCAACTGGAGAAAGTTGGG
AGATATTTAGACAGAATTGTTGCAAAATAACGGTAAGTTCAACCTGGATT
AGTACATTAGTGTCAATGTTTTTTACCCCTTTGGGTTCTTTTGATTGGAA
CACATTGTTATAAAATGTCATTATCCACCTTGGAACATTTCAATATGGCT
ATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttgtttagatttgagcgggcgaaatttctgtacaaacca
aaatatggcttcgttggaatactggttgaaacacttgtggcTTTGCTTGA
ATGATTAAATCTGTTGTTAACAAAACCTATTATCCATTCTATCATTCTCT
TGATCGTGTTTCCACTCTGTGGCTGTgggaggaccctgccgacgcaccgg
acttaaagaacaccggacacgcgaaagtccggtgtaaaatgagaattttt
ttaccactggacaatttctacactggacttaaggaagtcggatgtccggt
gtcggagaaggatatttttcccaccggacaatcaaaacaccggacatgac
cagtccggtgcgtccggtgtttcttaattttttgtctcATAAATATCCGG
CGttcaaaattccctgtatgcaacaccggacttattgcgtccggtgtagc
gaaaggatactttttgccaccggacaaatacactggacagtccggtgcgt
cggcagggtcctgctGTGGGTTGCTCGGAATAGTTTGCTGTAGACGTTGA
AACTTTTTAATAGGAATGAACTTCTCTCAGCGACTGCAGATGGGAAAAAC
tgatgaaaattttattaatataATATTATGCTAATTACAAAGAAACATAA
AGTTTGAAGAAACAAGTGGAAACATATTCTAGATTAAATTTTGTGGATTT
CACTCCTCagatttcttatttttcctCGACTTTGGATCAAATAGATGCGT
GTATGTCTCTTTCAAGTTAGGGTTAACTCGAGTGTAATGCTCTTTCATGT
AAGACTTCATCTTTTCAACAGGATTTGGCATGGATGCAAATGATGCCATC
AGCTTATTCATTGATGCGTGGAGACTTTCGAGGCCTTGCTCGCCATACAG
TCCAAACGGTGCATGCCACTTGCGCAAAAAAGGGATAACATGTTCCTCCA
ACATATGAAGCTTTGGTGTTATTGTTTGGTTCTTAAAGATATCACGATAG
TAAGACATTAAATCTTTGATGGCAACATCTGTGAAAGAatagaaacaaat
attttgtaaactacttttgatgatttttttttacaaagcaaccgcctatt
ttcattttaatcatcaaaatttgatttcaataaatgcaaaatttgagaaa
aggCACCCTGCTATAGTAAAATAAGTTCTCACTTTTAtcttaagataaaa
aaaaaacaacttgtaTCCGACTTTAGCCTGAAAATAGTTCATACTTTGAT
TTCTTATTtatatatactgatggcgaaatgaataGCATGGTCAGGGCTgg
taatttaaaagtttttaaatttccaACCAAAAAAACCGTTGATAAGAATC
TGCCAATCATAACACTTCTTTCTGATCCGTCAAGCATACATCCGAAGACG
GGTTCTCCTGTCTAATCTGACTTTAACTTATTTACCCTTTTAATTTCAGG
CTTCAAGCTCAATTGTCACTGGTGCACTTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030079	XLOC_030079	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00047218-exon-scaffold_123-1491911889:515487..515818	TCONS_00047218-exon-scaffold_123-1491911889:515487..515818	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1510915933:515487..515818	TCONS_00047218-exon-scaffold_123-1510915933:515487..515818	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1575043694:515487..515818	TCONS_00047218-exon-scaffold_123-1575043694:515487..515818	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1491911889:518608..518785	TCONS_00047218-exon-scaffold_123-1491911889:518608..518785	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1510915933:518608..518785	TCONS_00047218-exon-scaffold_123-1510915933:518608..518785	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1575043694:518608..518785	TCONS_00047218-exon-scaffold_123-1575043694:518608..518785	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1491911889:519236..519268	TCONS_00047218-exon-scaffold_123-1491911889:519236..519268	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1510915933:519236..519268	TCONS_00047218-exon-scaffold_123-1510915933:519236..519268	Clytia hemisphaerica	exon
TCONS_00047218-exon-scaffold_123-1575043694:519236..519268	TCONS_00047218-exon-scaffold_123-1575043694:519236..519268	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_123	supercontig	scaffold_123:515487..519268 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106221	0.310746	0	0	8.73792	8.26315	8.05725	10.995	5.01257	5.21102	6.34934	3.53712	2.4019	4.18178	0.241263	0.258912	0	0.0817305	0	0.118157	0	0	0	0	10.7202	8.34613	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00047218 vs. Swiss-Prot (Human)

BLAST of TCONS_00047218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00047218 (transcript) - C. hemisphaerica