TCONS_00047217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047217
Unique NameTCONS_00047217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047217 ID=TCONS_00047217|Name=TCONS_00047217|organism=Clytia hemisphaerica|type=transcript|length=150bp
gacGAAATGTACGAGATGTGATTGCTGCTGGTacaagatttcttttgttg
atgtGATAGTTAATTTCGTCCAAACATAATGAAGAAGTAAGGTGATTGTG
AGGATGATGGTTCTTTGAAGTTTCGTCTAAGGATAACATTCTTTCATGAT
Run BLAST on NCBI

transcript from alignment at scaffold_123:488065..488272+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047217 ID=TCONS_00047217|Name=TCONS_00047217|organism=Clytia hemisphaerica|type=transcript|length=208bp|location=Sequence derived from alignment at scaffold_123:488065..488272+ (Clytia hemisphaerica)
gacGAAATGTACGAGATGTGATTGCTGCTGGTacaagatttcttttgttg
atgtGATAGTTAATTTCGTCCAAACATAATGAAGTAGTACNcaagatttc
ttttgttgatgtGATAGTTAATTTCGTCCAAACATAATGAAGAAGTAAGG
TGATTGTGAGGATGATGGTTCTTTGAAGTTTCGTCTAAGGATAACATTCT
TTCATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030078XLOC_030078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047217-exon-scaffold_123-1491911889:488065..488139TCONS_00047217-exon-scaffold_123-1491911889:488065..488139Clytia hemisphaericaexon
TCONS_00047217-exon-scaffold_123-1510915933:488065..488139TCONS_00047217-exon-scaffold_123-1510915933:488065..488139Clytia hemisphaericaexon
TCONS_00047217-exon-scaffold_123-1575043694:488065..488139TCONS_00047217-exon-scaffold_123-1575043694:488065..488139Clytia hemisphaericaexon
TCONS_00047217-exon-scaffold_123-1491911889:488198..488272TCONS_00047217-exon-scaffold_123-1491911889:488198..488272Clytia hemisphaericaexon
TCONS_00047217-exon-scaffold_123-1510915933:488198..488272TCONS_00047217-exon-scaffold_123-1510915933:488198..488272Clytia hemisphaericaexon
TCONS_00047217-exon-scaffold_123-1575043694:488198..488272TCONS_00047217-exon-scaffold_123-1575043694:488198..488272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:488065..488272 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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