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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047205 ID=TCONS_00047205|Name=TCONS_00047205|organism=Clytia hemisphaerica|type=transcript|length=1929bp
ATAGACTGGTGAACACACTTCAGTAATCTACGGAACTCCATATCCTTACC
GTCTGTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGAAGAACTTGGT
ACATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGGTTGTCCTCAA
TGAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTCACAAATAAAG
ATGACGTGACGGATTTGATTAAAAACCGcactgttgaatttcaaaagaaa
tggaTCAACGTTGGACCGGCTGTTAAGAAAAATGTAAGAAGTTACTTTAA
CAGTACTCACAGTTTGTGCTTTTAGCACAATTTTCCACGATTTTTGAATA
ATTCTAGAAGATGTATTCATTCTCGCATAGAATCTTTCTGTTTGAAAGCA
TTACGGCCGAAAATAAGTTAccttaaaatattaagaactagCGACGGCAA
CATTGAACTGTTTTTTATCGCGGTTGCCATATTTTGATTTCGTCACTTCT
CATTTTCAAGTCTCTTTTTTCTTCATACGAAGTGCTGCGAGCctaaaaaa
gagatttttgcGACTATATTTTTTCCATCCAGCTTGAAAATCAGACCAGC
GTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTTCCGCGACCTC
AGTAACCGTCGTCACAAAGAAATCACCACCTACTACAACAATGGCACAAC
AACAGCAACACGGAAACACAAAACAATCGTTCTATCGTGGTCCACAACAT
ATTCCAAAAACTGTCATTCGAAAATCGCCCACTGAACAACATTTTGAACC
AGATTTTATGCGTGCTCTCACCAACGCTAACGCATACCAACAACACAACC
AACATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGATGACTCATTC
AGCTCAACATGGGGAATCTCCAACAAGAAGACTTCCTATTGGTCTCAACC
GCCCAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCATCCAGTGTTG
ATGCCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTTCGAAGAGGAT
GCATCGCAAAGCCAATTCATgcctaaaatcgatttttcatctttcgattt
ttcttttgataacaATCCCTGGTCCCGACTCGGTGGATGCGGCCCCATCG
CGCCACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCAAAAGAAGTAA
GTGCCGAATGGTTTCTATTTTAAAATAATGGTACAACATCAAAGACCGTC
AGGCTTTCCTAAAAAAGAAATGCTTTCAGCAATTCCATTTCACGGATTAT
TTTTACAGTTttcgttttattatttttttggttcaCTCACACATGTCATG
GGACGCTTGTGTCTGGCCTGTTCtgttttttggatatttttaagttgcag
attttatttattgattttaaaCTAATATAGTGTGTTTACCCTTGTACATA
TAACCAACTCTAACcccttgttttattttttataataattatataCCTTA
GAAGATTTTTTGTTAACGTTTGGAAAAAGTGAAgattttttagataattt
aagGTTCAGAAGTTTTACGTTCTTTATATGGTTTTATTATCGTTTTATAT
AGTAATTAGTCCAAGTTTCAACATAAGGCAAGTTTACTactaatatttta
aaatttttaatggTTCCAGCTGGGTTTTAACTACTCGAAAGAAAGCTCTG
aaagtcaaaaaagaatttgaaattttacttcTCACCTTACCTTAATGAAA
TAATTCTCTTTAATAGACTATACTTGGCTTAACCGATTTTAGTGTTTATG
TTTTAGCAATTtagttccattttttgaaactattttatttcttaaTGTTT
GTACATTTATGCAAGACTGTTTACCGTTATTAGGACTTTTTTACCTTagg
tttaaaatatattgatgtTACTATTGAAG Run BLAST on NCBI transcript from alignment at scaffold_123:308175..310103+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047205 ID=TCONS_00047205|Name=TCONS_00047205|organism=Clytia hemisphaerica|type=transcript|length=1929bp|location=Sequence derived from alignment at scaffold_123:308175..310103+ (Clytia hemisphaerica)
ATAGACTGGTGAACACACTTCAGTAATCTACGGAACTCCATATCCTTACC
GTCTGTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGAAGAACTTGGT
ACATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGGTTGTCCTCAA
TGAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTCACAAATAAAG
ATGACGTGACGGATTTGATTAAAAACCGcactgttgaatttcaaaagaaa
tggaTCAACGTTGGACCGGCTGTTAAGAAAAATGTAAGAAGTTACTTTAA
CAGTACTCACAGTTTGTGCTTTTAGCACAATTTTCCACGATTTTTGAATA
ATTCTAGAAGATGTATTCATTCTCGCATAGAATCTTTCTGTTTGAAAGCA
TTACGGCCGAAAATAAGTTAccttaaaatattaagaactagCGACGGCAA
CATTGAACTGTTTTTTATCGCGGTTGCCATATTTTGATTTCGTCACTTCT
CATTTTCAAGTCTCTTTTTTCTTCATACGAAGTGCTGCGAGCctaaaaaa
gagatttttgcGACTATATTTTTTCCATCCAGCTTGAAAATCAGACCAGC
GTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTTCCGCGACCTC
AGTAACCGTCGTCACAAAGAAATCACCACCTACTACAACAATGGCACAAC
AACAGCAACACGGAAACACAAAACAATCGTTCTATCGTGGTCCACAACAT
ATTCCAAAAACTGTCATTCGAAAATCGCCCACTGAACAACATTTTGAACC
AGATTTTATGCGTGCTCTCACCAACGCTAACGCATACCAACAACACAACC
AACATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGATGACTCATTC
AGCTCAACATGGGGAATCTCCAACAAGAAGACTTCCTATTGGTCTCAACC
GCCCAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCATCCAGTGTTG
ATGCCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTTCGAAGAGGAT
GCATCGCAAAGCCAATTCATgcctaaaatcgatttttcatctttcgattt
ttcttttgataacaATCCCTGGTCCCGACTCGGTGGATGCGGCCCCATCG
CGCCACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCAAAAGAAGTAA
GTGCCGAATGGTTTCTATTTTAAAATAATGGTACAACATCAAAGACCGTC
AGGCTTTCCTAAAAAAGAAATGCTTTCAGCAATTCCATTTCACGGATTAT
TTTTACAGTTttcgttttattatttttttggttcaCTCACACATGTCATG
GGACGCTTGTGTCTGGCCTGTTCtgttttttggatatttttaagttgcag
attttatttattgattttaaaCTAATATAGTGTGTTTACCCTTGTACATA
TAACCAACTCTAACcccttgttttattttttataataattatataCCTTA
GAAGATTTTTTGTTAACGTTTGGAAAAAGTGAAgattttttagataattt
aagGTTCAGAAGTTTTACGTTCTTTATATGGTTTTATTATCGTTTTATAT
AGTAATTAGTCCAAGTTTCAACATAAGGCAAGTTTACTactaatatttta
aaatttttaatggTTCCAGCTGGGTTTTAACTACTCGAAAGAAAGCTCTG
aaagtcaaaaaagaatttgaaattttacttcTCACCTTACCTTAATGAAA
TAATTCTCTTTAATAGACTATACTTGGCTTAACCGATTTTAGTGTTTATG
TTTTAGCAATTtagttccattttttgaaactattttatttcttaaTGTTT
GTACATTTATGCAAGACTGTTTACCGTTATTAGGACTTTTTTACCTTagg
tttaaaatatattgatgtTACTATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047205-exon-scaffold_123-1491911889:308175..310103 | TCONS_00047205-exon-scaffold_123-1491911889:308175..310103 | Clytia hemisphaerica | exon |
| TCONS_00047205-exon-scaffold_123-1510915933:308175..310103 | TCONS_00047205-exon-scaffold_123-1510915933:308175..310103 | Clytia hemisphaerica | exon |
| TCONS_00047205-exon-scaffold_123-1575043694:308175..310103 | TCONS_00047205-exon-scaffold_123-1575043694:308175..310103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:308175..310103 + |
Blast
The following BLAST results are available for this feature:
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