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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047170 ID=TCONS_00047170|Name=TCONS_00047170|organism=Clytia hemisphaerica|type=transcript|length=1222bp
CTGATatcaaaagtttctttttaaaatttcatactcAAGATGTGCATAAA
TGCCAAATcgttaaaaacgaaagtggttttttATACCGCATGTGTCTGGC
AGTAGTTGCAAAGCAGCTATATGATAAACGACAAGAAttatgaataaaag
aaaaatatgaatcTTTCCACATTTTGTGTTTTCTTTGCGATTTTTTCATT
GGTTTCTTGTAAACCAGCCACCAAAGAAAATGATGTTGAAACATCtttaa
tgaaagatattttggaACGTGCTTTTGGATTGGATAAAAAGAAGGAAGGA
GTGAGcgaaatttcaaagaaagatgAAGTTACTTCACTTAAACAAGATCA
AGCGAACGATAGAGTGAGTGCTTTTCGATTTTATTATAAAACCAAATCTT
TCGAAATTTACAGTATCTTCTAAACTTGTATTTCATAACATCATCCATTC
TGCACATACAATTCTCTGCTCTAAAGCGATATGGTGAATGCGACCATCTG
ACTTGGTTGTTCAGTCAAAACATTCATAGCCGCGCTGccatttgcttgaa
aacgaaagcgaaagcggttggattctaatgtttttatttggtgcgattgt
tttgatttagccAATCAGCGCGCTCAAAATCTCATCTAATAATTATCCCA
AAACTGGCTGAAAAAGATGAAACTAGTGCGCCAACCTAGGCAGATTCTCT
TGCGGAGCCGTGGTCCTTAGAGTGCATACTTGCCAACGCTGAGTAATCAG
AATCTGGTCGGAGATTAGTGAATCAGAGGAATCAAAATTGTGTTCCAGTA
GCAAAGGAAAAAGTTTAGGCTAAATTGAAATAACAATCGAGTCAGATATA
CAGTGGAACCTGcgtaactcgaacctctataactcgaacaagagTTTTAA
GGCCTCTTCAGTGAGCAAACTCTTTTAAACAAGTCTCTTTGACTCGagat
ttccataactcgaacaaattccaATTCCCCATATGcgcgttcgagttatg
gagattccacCGTATTTACTTTGTACTTTTCTTTgatatttgacattttt
cttcACTATTCTGTACACGTTTTAAGCGTTCACACGTTGGGGCAAGTCAT
GATGACACGCGTGAGATCTTGGGACGATGTGACATTAACAAGAAGTGTGA
AGCCAGTCAATACTGCGATGGaatgttttgttataaatgCAGAACAGAAG
GACATCACTGTGATTTGAACGg Run BLAST on NCBI transcript from alignment at scaffold_123:87603..88824+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047170 ID=TCONS_00047170|Name=TCONS_00047170|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_123:87603..88824+ (Clytia hemisphaerica)
CTGATatcaaaagtttctttttaaaatttcatactcAAGATGTGCATAAA
TGCCAAATcgttaaaaacgaaagtggttttttATACCGCATGTGTCTGGC
AGTAGTTGCAAAGCAGCTATATGATAAACGACAAGAAttatgaataaaag
aaaaatatgaatcTTTCCACATTTTGTGTTTTCTTTGCGATTTTTTCATT
GGTTTCTTGTAAACCAGCCACCAAAGAAAATGATGTTGAAACATCtttaa
tgaaagatattttggaACGTGCTTTTGGATTGGATAAAAAGAAGGAAGGA
GTGAGcgaaatttcaaagaaagatgAAGTTACTTCACTTAAACAAGATCA
AGCGAACGATAGAGTGAGTGCTTTTCGATTTTATTATAAAACCAAATCTT
TCGAAATTTACAGTATCTTCTAAACTTGTATTTCATAACATCATCCATTC
TGCACATACAATTCTCTGCTCTAAAGCGATATGGTGAATGCGACCATCTG
ACTTGGTTGTTCAGTCAAAACATTCATAGCCGCGCTGccatttgcttgaa
aacgaaagcgaaagcggttggattctaatgtttttatttggtgcgattgt
tttgatttagccAATCAGCGCGCTCAAAATCTCATCTAATAATTATCCCA
AAACTGGCTGAAAAAGATGAAACTAGTGCGCCAACCTAGGCAGATTCTCT
TGCGGAGCCGTGGTCCTTAGAGTGCATACTTGCCAACGCTGAGTAATCAG
AATCTGGTCGGAGATTAGTGAATCAGAGGAATCAAAATTGTGTTCCAGTA
GCAAAGGAAAAAGTTTAGGCTAAATTGAAATAACAATCGAGTCAGATATA
CAGTGGAACCTGcgtaactcgaacctctataactcgaacaagagTTTTAA
GGCCTCTTCAGTGAGCAAACTCTTTTAAACAAGTCTCTTTGACTCGagat
ttccataactcgaacaaattccaATTCCCCATATGcgcgttcgagttatg
gagattccacCGTATTTACTTTGTACTTTTCTTTgatatttgacattttt
cttcACTATTCTGTACACGTTTTAAGCGTTCACACGTTGGGGCAAGTCAT
GATGACACGCGTGAGATCTTGGGACGATGTGACATTAACAAGAAGTGTGA
AGCCAGTCAATACTGCGATGGaatgttttgttataaatgCAGAACAGAAG
GACATCACTGTGATTTGAACGg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047170-exon-scaffold_123-1491911889:87603..88824 | TCONS_00047170-exon-scaffold_123-1491911889:87603..88824 | Clytia hemisphaerica | exon |
| TCONS_00047170-exon-scaffold_123-1510915933:87603..88824 | TCONS_00047170-exon-scaffold_123-1510915933:87603..88824 | Clytia hemisphaerica | exon |
| TCONS_00047170-exon-scaffold_123-1575043694:87603..88824 | TCONS_00047170-exon-scaffold_123-1575043694:87603..88824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:87603..88824 + |
Blast
The following BLAST results are available for this feature:
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