|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047139 ID=TCONS_00047139|Name=TCONS_00047139|organism=Clytia hemisphaerica|type=transcript|length=3527bpRun BLAST on NCBI protein sequence of TCONS_00047139-protein >TCONS_00047139-protein ID=TCONS_00047139-protein|Name=TCONS_00047139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp MAQTATTRAAWSNNQEDYELQETIGYGATAVVIAATYLPSGEKVAIKRIDRun BLAST on NCBI transcript from alignment at scaffold_122:129761..151791- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047139 ID=TCONS_00047139|Name=TCONS_00047139|organism=Clytia hemisphaerica|type=transcript|length=22031bp|location=Sequence derived from alignment at scaffold_122:129761..151791- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_122:129761..151791- >TCONS_00047139 ID=TCONS_00047139|Name=TCONS_00047139|organism=Clytia hemisphaerica|type=CDS|length=27540bp|location=Sequence derived from alignment at scaffold_122:129761..151791- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047139 vs. Swiss-Prot (Human)
Match: STK39 (STE20/SPS1-related proline-alanine-rich protein kinase OS=Homo sapiens GN=STK39 PE=1 SV=3) HSP 1 Score: 470.315 bits (1209), Expect = 6.007e-152 Identity = 265/505 (52.48%), Postives = 337/505 (66.73%), Query Frame = 1
Query: 238 AWSNNQEDYELQETIGYGATAVVIAATYLPSGEKVAIKRIDLEKCGADIDEMRKEIQTMSRCNHENVVNYYTSFIVKQELWIVMKLLDGGSVLDIIKHMIRSGQVDPLQGVLDEVVIATILREVLKGLEYFHKNGQIHRDVKAGNILLGGDGSVQLADFGVSSTVVEYTERGQ-KLRNTFVGTPCWMAPEVMEQAGGYNNKVDIWSFGITAIELATGTAPYAQFPAMKVLMLTLEGEPPTLETCANGEREAYKKYSKQFRKMIALCLQKEHIQRPDATELLKNQFFKKAKTKEYLIEYLINKAPKVSERRNKTRRKPQSNDGTRDESGDWEFEDTEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKEVXXXXXXXXXXXXXXXXXXXXXXXXXXDATPVNEDK------VFDLTLRLRSATKELNDIRFEFNRKTDSVEGVSQELMSAGLIDGQDLLIVGANMNKMIASPPENKQLTFALKSAQDDSAERDEKTLIGYAMLTL 1731
W ++ YELQE IG GATAVV AA P E+VAIKRI+LEKC +DE+ KEIQ MS+C+H NVV YYTSF+VK ELW+VMKLL GGS+LDIIK+++ G+ GVL+E +IATIL+EVL+GL+Y H+NGQIHRD+KAGNILLG DGSVQ+ADFGVS+ + + + K+R TFVGTPCWMAPEVMEQ GY+ K D+WSFGITAIELATG APY ++P MKVLMLTL+ +PPTLET ++E KKY K FRK+++LCLQK+ +RP A ELLK +FF+KAK +EYLIE L+ + P +++ R K R+ + G TED E S + + S A + S K+E P +A + S PP+A NED +L LRLR++ KELNDIRFEF D+ +GVSQEL SAGL+DG D++IV AN+ K++ P K LTF L S D S DE LIG+A L++
Sbjct: 55 GWPICRDAYELQEVIGSGATAVVQAALCKPRQERVAIKRINLEKCQTSMDELLKEIQAMSQCSHPNVVTYYTSFVVKDELWLVMKLLSGGSMLDIIKYIVNRGEHK--NGVLEEAIIATILKEVLEGLDYLHRNGQIHRDLKAGNILLGEDGSVQIADFGVSAFLATGGDVTRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADMWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPTLETGVE-DKEMMKKYGKSFRKLLSLCLQKDPSKRPTAAELLKCKFFQKAKNREYLIEKLLTRTPDIAQ-RAKKVRRVPGSSG--------HLHKTEDGDWEWSDDEMDEKSEEGKAAFSQEKSRRVKEENPEIAVSASTIPEQIQSLSVHDSQGPPNA---NEDYREASSCAVNLVLRLRNSRKELNDIRFEFTPGRDTADGVSQELFSAGLVDGHDVVIVAANLQKIVDDPKALKTLTFKLASGCDGSEIPDEVKLIGFAQLSV 544 The following BLAST results are available for this feature:
BLAST of TCONS_00047139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.