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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047127 ID=TCONS_00047127|Name=TCONS_00047127|organism=Clytia hemisphaerica|type=transcript|length=230bp
ACCTGGTCTATCGAAGAGTGTTTGTGTATCTTTCCATGCATAGGGCGATG
CCAAACTCACAACCAATTCCTTTCcccaataaaatgaaaacatggGTCCA
AACTTTTTGTGATGATCCAATAAAAATTGATGCAAGCCGCCATCTTTGGT
GATTTGTTTTAAATTCCCTTACATTTCATGCTTGCTGGAGAGTCCAGGGA
TTGATAATTTCCCTTGATTTCGTtcattct Run BLAST on NCBI transcript from alignment at scaffold_122:181788..187289+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047127 ID=TCONS_00047127|Name=TCONS_00047127|organism=Clytia hemisphaerica|type=transcript|length=5502bp|location=Sequence derived from alignment at scaffold_122:181788..187289+ (Clytia hemisphaerica)
ACCTGGTCTATCGAAGAGTGTTTGTGTATCTTTCCATGCATAGGGCGATG
CCAAACTCACAACCAATTCCTTTCcccaataaaatgaaaacatggGTCCA
AACTTTTTGTGATGATCCAATAAAAATTGATGCAAGCCGCCATCTTTGGT
GATTTGTTTTAAATTCCCATATCTAGTATGAAGTAATGGAATGCGATGTC
CAAACAACAATCAAGAAAATCCAAACTCAAGATACTTCAGTCTGAGGGTT
TATAATTAAGAATTTTTCCGAGAGTGCAGTCCACTCTCACTAGATCGTAC
TAAAGAAAACAGTTTTTTCGAGCTACAGAGTGAATTGAATTAAAGGAAGA
ATTTTAGGAGTGTTTCTTTTGATAAGGAatgagaattagttcgaattata
gagaagGTCGAATAATAGAAATTCGAAATAGCGAAAGCCCACTGTTAAAT
CTAATCCCTTTATAGGGGAAACAGTTTTTTTTGGGATCCTTAGATtcatt
ttgcttgatttttACAAAACCATATATACCTTATTGGCCtttttttacgc
cggcccttattggcattatttttgggctcgtggcgtaataagggccggtg
ttaaaagggccggtataaaaagggccaaaatttagcaatttttacctaaa
agcggcgttaatttttgaccattttttctcaatttaaaggattttaggca
tgaaaaaaggatgaaaactatccatttttttactctttactttttttata
tccaaaacttcacgaaaatcaatgattttcaatggaattttcaacagttt
aatactgaaagtaaatacttactgttttgaagcctgaatagcgattttta
caagttttggcatcatttacggccctaattggcgtaagcccaaaattagg
ctttGGCGGAATAAatgccggcgtaaaaggggccggcgttaaataagggc
cggcgtaaaaggggtcggcgttaaattagggccggcgtagaaagggccga
taaggtagtcaaAATCTCGAAAATCGAGGGAGAAGGGAAATCTTGATTTT
CGTTAAAGTTTTAACTTCTCAGAGATAgggtaaattttcaaaaccttaaT
TTTCCGTAACTTTCTACAGGCGgtaacttcgatcaaagatggcggatata
gcttggtccagggatatataaaggtcagtggtctgAGCAGGTCGGAGAGG
GTTGTCAAAAACATCCTGTGTTACTTTAGGTAGATAAATCTTTGGTTGTT
TTGGATTCACATTTGCAAAGGACATAACACTAAGAAGTGATGGACGTGCG
AAGAGATGTGTACAGTGGGGCTTTcgctagtctacacaatagacagatcc
aggcttttaggccttactcttggtctataggcactgctataggcggccac
tagtgacccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNtttatctggagaatttcaatattcaaaacaag
aggagtgctcatagcccgaagagtaggagttttacgctcgaaacgaagga
agatatgacgtagcctaggcTTTCGCATGTCTTTACACGTACACGAACCT
TGCGTGTCAGAGACTCGCAAGCGGCTCCTTTCACTATTGAAAACCTATTT
ATTGGCGACTCGTAGCCTCGAACTAATAGGGACACTCAAGCTATTTAAAA
CAGGTCAAAAGCCTATTATAATTTGCGAGCTATTATGTAGTGCAAACAGA
AAACAATAGTCTGCGTGTTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATATCGTTTTATAAAAATGTATTGTGCTTAGGATGGAACTAAAAGGCTTG
AAATCAAATGAAAGaaagtaaacttttttcttttctcctttttaattcat
tttacATTTCTTTCAGTCTAAAATTTCGAAATGTAGTAAGGAACCAACAG
AATCAAATGTTGTTGCTATTAAAAGAATTGAATATAGAACAAATACTGGA
TATGTTAACTTGTCTCCCTTGTCCAGAAATTTATTCTGGAAGattcattt
tggaaaaaaaagttttaacccTTATTTTTTCACACTGACAACGTTAACAA
AAAACACTGATGAAACGTCAATGAAAATGGATATAATTTTTTAGTGTCCT
AAAGCTTTACCCCCTAGTTTAACTACTATTGGCAATACTTTGTTTATATG
GTTGACGTCCATGGGTTAATGTATCGGCATTTCGCTTGGCCAACCATGTC
CCAAAAGCTTTTAATACCATCAACTAGTTGATCTTATGCCATCGGTTATG
TTATTTCTGAGATGATATCTCATTTCAGCCCATAGCATaggtttttttag
atttaatttttttcttctaatttcatttacttatacacgtttttttagat
ttaagaaactagttttaccaagcagcctcaatggttcttaagaaatcggc
ctttttgGAAGGCTCttaaaaaaaaccgaattaaaaaatgttattttctc
attctcagcctcagcatgtttcctagatgtttcttagtttttaggcgtTC
TGAGCcttgtgtttcttaaaagtgtgtttcttaaaaagaaaacgtgtaat
ttTATTATTACCCTCTATATACTATTACAGTGTTAGTCTGAtatcagggt
tcgaattataaattttaagaGCTTCCCTATTTTTTTGAGCGAAGCGAGAT
AAAGGAGCAAAGTatagtgaagttttgaagtaaCGAGTAGATGAAGCAAT
Atgtaaacgagtgaataaagttgcgagtttataaagcaatagataaacga
gtgaataaaatAGCGAAATgacaagtagataaagcaatagataaacgaac
gaagaaagtagcgaagtggcaagttgataaagcaatggaTTTTTAAACAA
GTGAATAAATTAGCAAACTCGCAAgtcgataaagcaatagataaacgaac
gaagaaagtagcgaagtggcaagttgataaagcaatggaTTTTTAAACAA
GTGAATAAATTAGCGAAGTagtgagtttataaagcaatagataaacgagt
gaataaagtagcgaagtggcaagttgataaagcaatagataaacgaatga
agaaagtagcgAACTCGCAAgtcgataaagcaatagataaacgagtgaat
aaagtggAGAAATGGCGaattgataaagcaatagataaacgagtgaataa
attagcAAACTCGCAAGTCGATAAAGCAAtggataaacgagtgaatagaG
TGGAgaagtagcgagtttataaagcaatagataaacgagtgaataaatta
gcgaagtggcgagtttataaagcaatagataaacgaatgaagaaagtagc
gAACTCGCAAgtcgataaagcaatagataaacgagtgaataaattagcga
agtggcgagtttataaagcaatagataaacgaatgaagaaagtagcgAAC
TCGCAAgtcgataaagcaatagataaacgagtgaataaagtagccgagta
gataaagcattagataaacgagtgaataaagtagcgaagtagcaagttga
taaagcaatagataagcGAGTGAATAAAATAGCGAAATgacaagtagata
aagcaatagataaacgaacgaataaagtagcgaagtagcaagttgataaa
gcaatagataaacgagtgaataaattagcGAACTCGCACgtcgataaagc
aatagataaacgagtgaatgaAGTGGAGAaatagcgagttgataaagcaa
tagataaacgagtgaataaagtagcgaactCGCAAgtcgataaagcaata
gataaacgagtgaataaagtggagaaatagcgagttgataaagcaataga
taaacgagtgaataaagtagcgaactCGCAAgtcgataaagcaatagata
aacgagtgaataaagtggagaaatagcgaattgataaagcaatagataaa
cgagtgaataaagtagcgaaatagcaagttgataaagcaatagataaacg
agtgaataaattagcGAACTCGCAAgtcgataaagcaatagataaacgag
tgaataaagtagcgaagtggcgagtttataaagcaatagataaacaaatg
aaagaagtagcaaaataggtgttttcttatggttttttaattttgcattt
ttaaagtctattcacgataagtgattgaccccaaaaaacagcaaaaaact
gcagaaaacagcgtttttagacgtcaatcagcttataactttgtttgata
tcttttgaatgaatgattatttttgagaatttttttcacagtgatgacgt
tcgatgattaagaattcacttcattgaaaatgatagttatagcacttttc
tacaaggtcttcatttttttcttcatttttagaatttttttaaagttttt
tttatttcaaattgttccactcactaatatctttccaatgataccaaatt
tataaagattgaagaattccttcaaaagttataggtaaatgaaaaaagag
tgaatagactttagttagGAAATCTTTTTGGATCGCTAAAAAATTCACTT
CGCATTTTGTGAAGTGCGAAGCTATAAATTGGAACCCTGGATATTGTTTA
TATTATCTCGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAT
AGCACGTACCTATTATACTAAACTAAATAGGCCTTTTATAAAAGGTACGA
GTTGAGTGTTGGGAGGGAAATCAAAAGCACTCGCATTGAACGAGTCTAAA
TAAATTGGATTTCTAACACCTATACATTATGTACTTGCAACGCGCGAGCT
TCGCGCACACGTAAAGACATGCGAAACCCCCACTAGGTGTTTTTCTTCGT
ATGGAACATGAAAGATTGAACGGGTGAGTTCTCATTATCCTAACAGTTCA
TTATGTAGTTTTGATAaaagggaaaagaaaaaaagagcaCTTACATTTCA
TGCTTGCTGGAGAGTCCAGGGATTGATAATTTCCCTTGATTTCGTtcatt
ct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047127-exon-scaffold_122-1491911889:181788..181955 | TCONS_00047127-exon-scaffold_122-1491911889:181788..181955 | Clytia hemisphaerica | exon |
| TCONS_00047127-exon-scaffold_122-1510915933:181788..181955 | TCONS_00047127-exon-scaffold_122-1510915933:181788..181955 | Clytia hemisphaerica | exon |
| TCONS_00047127-exon-scaffold_122-1575043694:181788..181955 | TCONS_00047127-exon-scaffold_122-1575043694:181788..181955 | Clytia hemisphaerica | exon |
| TCONS_00047127-exon-scaffold_122-1491911889:187228..187289 | TCONS_00047127-exon-scaffold_122-1491911889:187228..187289 | Clytia hemisphaerica | exon |
| TCONS_00047127-exon-scaffold_122-1510915933:187228..187289 | TCONS_00047127-exon-scaffold_122-1510915933:187228..187289 | Clytia hemisphaerica | exon |
| TCONS_00047127-exon-scaffold_122-1575043694:187228..187289 | TCONS_00047127-exon-scaffold_122-1575043694:187228..187289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_122 | supercontig | scaffold_122:181788..187289 + |
Blast
The following BLAST results are available for this feature:
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