TCONS_00047126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047126
Unique NameTCONS_00047126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047126 ID=TCONS_00047126|Name=TCONS_00047126|organism=Clytia hemisphaerica|type=transcript|length=516bp
CGGGGAGCCTTGGGACAAGTTTTACACATACAGTTTTGAATAGGCCTCTG
ACTTGTATCTGAAAGCTTACAATACGCTTTTGAGTTTGggaatttttctc
tttagaaACGGTGAACTTGTGAAGGACTCGTTAGAGAAAACGATACAAAT
CAATGAACGAAAACATCAGAATGCTCAACTCGagaaagaattggaaaaaa
cGTTACTCAGCCAACGAAACAATAAAAAAGCCAGCCTTTCACCGAGGAAA
ACCGATCCTGCTAAAGACCTGCTAGAAATGGAAACGAAGTAAGACTGTCA
ATTTTTCAcctctgtctcagtgacccagtgGGTACGCCACAGAGGATTCA
AATGTAATGAAAAGTCTCTAGCTTTCATCGGGTGGGAATTTCAAAGTATA
ATTCTTATAGCGCAAAAAAAGCTTTGGGATCCTCTTAGGATTTTTGAGTC
CTGTTAACATTTCTAATTTAAGGGTTGGACGATTTTTCAAGATTGTAGGA
GAATCTACAGGCTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_122:166961..167476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047126 ID=TCONS_00047126|Name=TCONS_00047126|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at scaffold_122:166961..167476+ (Clytia hemisphaerica)
CGGGGAGCCTTGGGACAAGTTTTACACATACAGTTTTGAATAGGCCTCTG
ACTTGTATCTGAAAGCTTACAATACGCTTTTGAGTTTGggaatttttctc
tttagaaACGGTGAACTTGTGAAGGACTCGTTAGAGAAAACGATACAAAT
CAATGAACGAAAACATCAGAATGCTCAACTCGagaaagaattggaaaaaa
cGTTACTCAGCCAACGAAACAATAAAAAAGCCAGCCTTTCACCGAGGAAA
ACCGATCCTGCTAAAGACCTGCTAGAAATGGAAACGAAGTAAGACTGTCA
ATTTTTCAcctctgtctcagtgacccagtgGGTACGCCACAGAGGATTCA
AATGTAATGAAAAGTCTCTAGCTTTCATCGGGTGGGAATTTCAAAGTATA
ATTCTTATAGCGCAAAAAAAGCTTTGGGATCCTCTTAGGATTTTTGAGTC
CTGTTAACATTTCTAATTTAAGGGTTGGACGATTTTTCAAGATTGTAGGA
GAATCTACAGGCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030047XLOC_030047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047126-exon-scaffold_122-1491911889:166961..167476TCONS_00047126-exon-scaffold_122-1491911889:166961..167476Clytia hemisphaericaexon
TCONS_00047126-exon-scaffold_122-1510915933:166961..167476TCONS_00047126-exon-scaffold_122-1510915933:166961..167476Clytia hemisphaericaexon
TCONS_00047126-exon-scaffold_122-1575043694:166961..167476TCONS_00047126-exon-scaffold_122-1575043694:166961..167476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_122supercontigscaffold_122:166961..167476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.17859	0.733401	1.12628	0.355166	0.154739	0.404904	0	0.856672	0	0	0	0	0	0	0	0.193548	0.334437	0	0	0	0	0	0.263988	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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