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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047122 ID=TCONS_00047122|Name=TCONS_00047122|organism=Clytia hemisphaerica|type=transcript|length=1794bp
TGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTT
AACTATCCTTTCCCATTGGCTAATCGGGAtTATACTTACATACGAGAATG
TAGAGAAATGACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCT
TATCAGAAAGCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTT
CGTGTCAACGATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAA
CACTACGAAAcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATAC
CCACATGGCTCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTTCTTG
ACAGAAATGAAGAAGGCGTCCGATGGCtatccaaaatatttggaaaagaa
aaaaaaggggaaaaagtGAACTGACTTATTCGAACGTCTAGGATTTTTAT
TATAATGCATGCATTTTATTACCACCAAATCACTCATCCCTCTTTGAGAT
ATTTTACGTGTTAGCCCAGTGATTACTAGATGACGTTAATGATGAGTGGT
CAAGGCGTCAACTCCTTACGACTTTTAGATTCTTTTGATAGTTTTCACGG
GGTCTATTGTCTGCTGGTTGGGCTTTTTTGAACTGATTGGAACACTGTGG
GAATTCTAACAGGAAACTGACGCTTTGACCACTCAGCCATTGCTCCTCAG
TTAAAAAGAACATTGCTTATAATATAAGCGTCACCTGGTACAACTAGtgt
aatttctttttctttctattaaagttttttttcgacaAGATAAAAGTTGT
ATTCTCGGTGAAGTGATGTTATGAACTTCAGGGTGTAAACAATTTTTTAG
TGTTTTGGTTTACAGTCTAGTCTTTCTAGATTTTTACGAAATGAGGGTTT
TAGCTGATTCATAATTACACGGAATCATCGATAAGTTGAGAAtctttttt
aactgtttttgtttttgtttttatgcaCAAACATTTTGTCTGTTTTTCGT
TAGGATATGCTCCGACTTTAGgtcatttttaataaaaaacatatttatta
attttgagtttggaaactattctagtcgcgagttagggagttgctagttt
cgagtttcgagttggggagttaaaaaattaccggctaccgaaaaagaata
acatacatcaaaagtacgattttgaaagtaaatgtaatatgagagtaata
tataacacatataatacgtataatatatataccacctgtaataagcttat
ttgccttaaacacgtgcgctgagagcatggaaagctattttctactgtca
Naagcatcacttgcagtatgatcaatattttttggggaatttgtttgaca
atcattgtatttaaagattttgtcaatatttttacaagaacgtgtcatgt
tgtcagtattatgacaatgacataacagaacataacagtactaagtattt
tggctttgctagccagcaTCTTACCAGTTTCATGAttttaaagtcaataa
tatgtttggtactggctaatttgaaaattgtacttttcggctacattagt
ttaaattagaaaattttcggtcgccgtaaagttttacgaacATCCCAACt
tgaaactagcaactccccaactccccaactccccaactcaccaactagaa
cattacctagactcATTAATTTTAGTACTTTCATAATTATAGGGTAGTTT
ATAAATAAACGCATCACAGATTTGTAttgtaatttttgtaaatgtttaTA
GATGAATTTTCCTTTCCAggaataaattttcaaatttttaaaag Run BLAST on NCBI protein sequence of TCONS_00047122-protein >TCONS_00047122-protein ID=TCONS_00047122-protein|Name=TCONS_00047122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
YEKEDEHEGSFIYWNVNYPFPLANRDYTYIRECREMTEETTNKTPTWVIL
SESKQISSCPDKSGVVRVNDYKQNLSIQHKDENTTKLFMHYKDNPGGSIP
TWLINWAAKKGVPSFLTEMKKASDGYPKYLEKKKKGKK Run BLAST on NCBI transcript from alignment at scaffold_122:111807..115869+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047122 ID=TCONS_00047122|Name=TCONS_00047122|organism=Clytia hemisphaerica|type=transcript|length=4063bp|location=Sequence derived from alignment at scaffold_122:111807..115869+ (Clytia hemisphaerica)
TGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTT
AACTATCCTTTCCCATTGGCTAATCGGGAtgtatcttttcaaaaattatt
cctCGTGTTATGTCTGTCAacacgaaaaatcatttaagaTAACGTACCAA
GCTATCATACCCCTGTAAAAATTCAAACAGCGCCGCGGCGCTTATTTTGA
GGAAATACGGTATTCGCAATCTGAAATTACTTTACTAGTGGTGTAACAGG
AACAAGAGTACATTACTCACAAAGGCCACGAGTAAATCtattgaacaaaa
atttgactttcatTTTACGCGATTTAAGCGATCTAAGGTCTCCAATGTAC
GTcctgttttttttgaaaaattagtgAATGAATTTTTAGGTATTTTGATA
ATCAAATCTTTGATGGCAAGTAGAAAAGTCCATTCCTTAACAAACGTTAC
TTTACCGTACCTATAGTATACTTACATACGAGAATGTAGAGAAATGACAG
AAGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAGCAAA
CAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACGATTA
CAAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAAcgtt
tgttattttcttttctttagagAGTTAAAGATTTTCTAATACTCTCTACA
CACGGGTTCGAAAACCCTCCTCGGTGGAAAAACTTGCCTCTATTTGGGgg
aaaagtcaaaatttagttgcAGAGTCTATGGCTACCCTACTAAAAGGCCA
GATGATCGAGTAAACAAAAATAAGCTACCAATAACTTATCTAATCTCTCA
TTGAGTTAATTGCTCACTTTACACGTTTATATGATAAAGATATTaggata
tcaaaatttgaaaatcaatacTTTGAGGGATTGAATTTCGAGAATTTGTC
CTTTTTTTGAGGCTTTTGCGAcacttagagagactacttttcCCAATTTT
CAGCCGGAATTTTCAGATTAAATCCAATTTCCGAGAATTAATGACCCTTT
GATGGAGTCGGTTTTTGATATTTCGTAATTTTGAGACCTTTTTAGGGACT
CTTTGCCAATTCATGTTtattgtacccctttgagagacttttgagagcta
aaaaagggacccttatgacTCGCACATTGATACCTTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NgggggttggaaatttttcgaaaaattgacaaGCGGGGggccccgtttat
ttggaacctaagagtatccTTTAGTCTGAACTTTATTTTTGCAAGTTTTT
TGTCTTCTGTTTTCAGTGTTCATGCATTACAAAGACAACCCAGGAGGTTC
AATACCCACATGGCTCATCAACTGGGCTGCTAAGGTTTGTTTTGCATAAA
GTTAATCTTttctaaaaacttgaaattgaaTTGTCCTTTTTCGTTGTAAA
AAggcatttttcatgtttttcttatCCAGATATTATTACCATTACGATTT
CAGCCCCATTTTGAATAACTTCtcttgtaatttttcttttccttgtaGAA
AGGAGTTCCAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCtatc
caaaatatttggaaaagaaaaaaaaggggaaaaagtGAACTGACTTATTC
GAACGTCTAGGATTTTTATTATAATGCATGCATTTTATTACCACCAAATC
ACTCATCCCTCTTTGAGATATTTTACGTGTTAGCCCAGTGATTACTAGAT
GACGTTAATGATGAGTGGTCAAGGCGTCAACTCCTTACGACTTTTAGATT
CTTTTGATAGTTTTCACGGGGTCTATTGTCTGCTGGTTGGGCTTTTTTGA
ACTGATTGGAACACTGTGGGAATTCTAACAGGAAACTGACGCTTTGACCA
CTCAGCCATTGCTCCTCAGTTAAAAAGAACATTGCTTATAATATAAGCGT
CACCTGGTACAACTAGtgtaatttctttttctttctattaaagttttttt
tcgacaAGATAAAAGTTGTATTCTCGGTGAAGTGATGTTATGAACTTCAG
GGTGTAAACAATTTTTTAGTGTTTTGGTTTACAGTCTAGTCTTTCTAGAT
TTTTACGAAATGAGGGTTTTAGCTGATTCATAATTACACGGAATCATCGA
TAAGTTGAGAAtcttttttaactgtttttgtttttgtttttatgcaCAAA
CATTTTGTCTGTTTTTCGTTAGGATATGCTCCGACTTTAGgtcattttta
ataaaaaacatatttattaattttgagtttggaaactattctagtcgcga
gttagggagttgctagtttcgagtttcgagttggggagttaaaaaattac
cggctaccgaaaaagaataacatacatcaaaagtacgattttgaaagtaa
atgtaatatgagagtaatatataacacatataatacgtataatatatata
ccacctgtaataagcttatttgccttaaacacgtgcgctgagagcatgga
aagctattttctactgtcaNaagcatcacttgcagtatgatcaatatttt
ttggggaatttgtttgacaatcattgtatttaaagattttgtcaatattt
ttacaagaacgtgtcatgttgtcagtattatgacaatgacataacagaac
ataacagtactaagtattttggctttgctagccagcaTCTTACCAGTTTC
ATGAttttaaagtcaataatatgtttggtactggctaatttgaaaattgt
acttttcggctacattagtttaaattagaaaattttcggtcgccgtaaag
ttttacgaacATCCCAACttgaaactagcaactccccaactccccaactc
cccaactcaccaactagaacattacctagactcATTAATTTTAGTACTTT
CATAATTATAGGGTAGTTTATAAATAAACGCATCACAGATTTGTAttgta
atttttgtaaatgtttaTAGATGAATTTTCCTTTCCAggaataaattttc
aaatttttaaaag Coding sequence (CDS) from alignment at scaffold_122:111807..115869+ >TCONS_00047122 ID=TCONS_00047122|Name=TCONS_00047122|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_122:111807..115869+ (Clytia hemisphaerica)
TATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTTAA
CTATCCTTTCCCATTGGCTAATCGGGAtTATACTTACATACGAGAATGTA
GAGAAATGACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCTTA
TCAGAAAGCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCG
TGTCAACGATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAACA
CTACGAAAcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATACCC
ACATGGCTCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTTCTTGAC
AGAAATGAAGAAGGCGTCCGATGGCtatccaaaatatttggaaaagaaaa
aaaaggggaaaaagtGATATGAGAAAGAAGATGAACATGAAGGATCCTTT
ATTTATTGGAATGTTAACTATCCTTTCCCATTGGCTAATCGGGAtTATAC
TTACATACGAGAATGTAGAGAAATGACAGAAGAGACGACAAATAAAACAC
CAACTTGGGTCATCTTATCAGAAAGCAAACAAATTTCTTCTTGTCCAGAC
AAGTCGGGTGTAGTTCGTGTCAACGATTACAAACAAAACTTGAGCATACA
ACATAAAGATGAAAACACTACGAAAcTGTTCATGCATTACAAAGACAACC
CAGGAGGTTCAATACCCACATGGCTCATCAACTGGGCTGCTAAGAAAGGA
GTTCCAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCtatccaaa
atatttggaaaagaaaaaaaaggggaaaaagtGATATGAGAAAGAAGATG
AACATGAAGGATCCTTTATTTATTGGAATGTTAACTATCCTTTCCCATTG
GCTAATCGGGAtTATACTTACATACGAGAATGTAGAGAAATGACAGAAGA
GACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAGCAAACAAA
TTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACGATTACAAA
CAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAAcTGTTCAT
GCATTACAAAGACAACCCAGGAGGTTCAATACCCACATGGCTCATCAACT
GGGCTGCTAAGAAAGGAGTTCCAAGCTTCTTGACAGAAATGAAGAAGGCG
TCCGATGGCtatccaaaatatttggaaaagaaaaaaaaggggaaaaagtG
ATATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTTA
ACTATCCTTTCCCATTGGCTAATCGGGAtTATACTTACATACGAGAATGT
AGAGAAATGACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCTT
ATCAGAAAGCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTC
GTGTCAACGATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAAC
ACTACGAAAcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATACC
CACATGGCTCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTTCTTGA
CAGAAATGAAGAAGGCGTCCGATGGCtatccaaaatatttggaaaagaaa
aaaaaggggaaaaagtGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047122-exon-scaffold_122-1491911889:111807..111886 | TCONS_00047122-exon-scaffold_122-1491911889:111807..111886 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1510915933:111807..111886 | TCONS_00047122-exon-scaffold_122-1510915933:111807..111886 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1575043694:111807..111886 | TCONS_00047122-exon-scaffold_122-1575043694:111807..111886 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1491911889:112273..112453 | TCONS_00047122-exon-scaffold_122-1491911889:112273..112453 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1510915933:112273..112453 | TCONS_00047122-exon-scaffold_122-1510915933:112273..112453 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1575043694:112273..112453 | TCONS_00047122-exon-scaffold_122-1575043694:112273..112453 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1491911889:114173..114240 | TCONS_00047122-exon-scaffold_122-1491911889:114173..114240 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1510915933:114173..114240 | TCONS_00047122-exon-scaffold_122-1510915933:114173..114240 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1575043694:114173..114240 | TCONS_00047122-exon-scaffold_122-1575043694:114173..114240 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1491911889:114405..115869 | TCONS_00047122-exon-scaffold_122-1491911889:114405..115869 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1510915933:114405..115869 | TCONS_00047122-exon-scaffold_122-1510915933:114405..115869 | Clytia hemisphaerica | exon |
| TCONS_00047122-exon-scaffold_122-1575043694:114405..115869 | TCONS_00047122-exon-scaffold_122-1575043694:114405..115869 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_122 | supercontig | scaffold_122:111807..115869 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008289 | lipid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008289 |
lipid binding |
Blast
BLAST of TCONS_00047122 vs. Swiss-Prot (Human)
Match: PPCT (Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 6.438e-34 Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 3
Query: 3 YEKEDEHEGSFIYWNVNYPFPLANRDYTYIRECREMTEETTNKTPTWVILSESKQISSCPDKSGVVRVNDYKQNLSIQHKDENTTKLFMHYKDNPGGSIPTWLINWAAKKGVPSFLTEMKKASDGYPK 386
YE+E E + +YW V YPFP++NRDY Y+R+ R++ E VIL+ S + ++SGV+RV YKQ+L+I+ + +K+FM+Y DNPGG IP+WLINWAAK GVP+FL +M +A Y K
Sbjct: 89 YEQECNGE-TVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRK---IHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLK 212
The following BLAST results are available for this feature:
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