TCONS_00047122-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047122-protein
Unique NameTCONS_00047122-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047122-protein ID=TCONS_00047122-protein|Name=TCONS_00047122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
YEKEDEHEGSFIYWNVNYPFPLANRDYTYIRECREMTEETTNKTPTWVIL
SESKQISSCPDKSGVVRVNDYKQNLSIQHKDENTTKLFMHYKDNPGGSIP
TWLINWAAKKGVPSFLTEMKKASDGYPKYLEKKKKGKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030045XLOC_030045Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047122TCONS_00047122Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
IPR002913START_lipid-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008289 lipid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023393START-like domainGENE3D3.30.530.20coord: 2..130
e-value: 1.8E-26
score: 92.6
IPR002913START domainPFAMPF01852STARTcoord: 9..123
e-value: 1.7E-17
score: 63.5
IPR002913START domainPROSITEPS50848STARTcoord: 1..128
score: 17.203
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 10..127

Blast
[Close]
BLAST of TCONS_00047122-protein vs. Swiss-Prot (Human)
Match: PPCT (Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.276e-38
Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 0 
Query:    1 YEKEDEHEGSFIYWNVNYPFPLANRDYTYIRECREMTEETTNKTPTWVILSESKQISSCPDKSGVVRVNDYKQNLSIQHKDENTTKLFMHYKDNPGGSIPTWLINWAAKKGVPSFLTEMKKASDGYPK 128
            YE+E   E + +YW V YPFP++NRDY Y+R+ R++  E        VIL+ S  +    ++SGV+RV  YKQ+L+I+   +  +K+FM+Y DNPGG IP+WLINWAAK GVP+FL +M +A   Y K
Sbjct:   89 YEQECNGE-TVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRK---IHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLK 212
The following BLAST results are available for this feature:
BLAST of TCONS_00047122-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPCT1.276e-3847.66Phosphatidylcholine transfer protein OS=Homo sapie... [more]
back to top