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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047120 ID=TCONS_00047120|Name=TCONS_00047120|organism=Clytia hemisphaerica|type=transcript|length=1848bp
GTGGAGATTGTAAATCAGCATTTTATaatatttgttatttttaattttta
gagcTGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAA
TGTTAACTATCCTTTCCCATTGGCTAATCGGGAtTATACTTACATACGAG
AATGTAGAGAAATGACAGAAGAGACGACAAATAAAACACCAACTTGGGTC
ATCTTATCAGAAAGCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGT
AGTTCGTGTCAACGATTACAAACAAAACTTGAGCATACAACATAAAGATG
AAAACACTACGAAAcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCA
ATACCCACATGGCTCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTT
CTTGACAGAAATGAAGAAGGCGTCCGATGGCtatccaaaatatttggaaa
agaaaaaaaaggggaaaaagtGAACTGACTTATTCGAACGTCTAGGATTT
TTATTATAATGCATGCATTTTATTACCACCAAATCACTCATCCCTCTTTG
AGATATTTTACGTGTTAGCCCAGTGATTACTAGATGACGTTAATGATGAG
TGGTCAAGGCGTCAACTCCTTACGACTTTTAGATTCTTTTGATAGTTTTC
ACGGGGTCTATTGTCTGCTGGTTGGGCTTTTTTGAACTGATTGGAACACT
GTGGGAATTCTAACAGGAAACTGACGCTTTGACCACTCAGCCATTGCTCC
TCAGTTAAAAAGAACATTGCTTATAATATAAGCGTCACCTGGTACAACTA
GtgtaatttctttttctttctattaaagttttttttcgacaAGATAAAAG
TTGTATTCTCGGTGAAGTGATGTTATGAACTTCAGGGTGTAAACAATTTT
TTAGTGTTTTGGTTTACAGTCTAGTCTTTCTAGATTTTTACGAAATGAGG
GTTTTAGCTGATTCATAATTACACGGAATCATCGATAAGTTGAGAAtctt
ttttaactgtttttgtttttgtttttatgcaCAAACATTTTGTCTGTTTT
TCGTTAGGATATGCTCCGACTTTAGgtcatttttaataaaaaacatattt
attaattttgagtttggaaactattctagtcgcgagttagggagttgcta
gtttcgagtttcgagttggggagttaaaaaattaccggctaccgaaaaag
aataacatacatcaaaagtacgattttgaaagtaaatgtaatatgagagt
aatatataacacatataatacgtataatatatataccacctgtaataagc
ttatttgccttaaacacgtgcgctgagagcatggaaagctattttctact
gtcaNaagcatcacttgcagtatgatcaatattttttggggaatttgttt
gacaatcattgtatttaaagattttgtcaatatttttacaagaacgtgtc
atgttgtcagtattatgacaatgacataacagaacataacagtactaagt
attttggctttgctagccagcaTCTTACCAGTTTCATGAttttaaagtca
ataatatgtttggtactggctaatttgaaaattgtacttttcggctacat
tagtttaaattagaaaattttcggtcgccgtaaagttttacgaacATCCC
AACttgaaactagcaactccccaactccccaactccccaactcaccaact
agaacattacctagactcATTAATTTTAGTACTTTCATAATTATAGGGTA
GTTTATAAATAAACGCATCACAGATTTGTAttgtaatttttgtaaatgtt
taTAGATGAATTTTCCTTTCCAggaataaattttcaaatttttaaaag Run BLAST on NCBI transcript from alignment at scaffold_122:110058..115869+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047120 ID=TCONS_00047120|Name=TCONS_00047120|organism=Clytia hemisphaerica|type=transcript|length=5812bp|location=Sequence derived from alignment at scaffold_122:110058..115869+ (Clytia hemisphaerica)
GTGGAGATTGTAAATCAGCATTTTATaatatttgttatttttaattttta
gagcTGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAA
TGTTAACTATCCTTTCCCATTGGCTAATCGGGAtgtatcttttcaaaaat
tattcctCGTGTTATGTCTGTCAacacgaaaaatcatttaagaTAACGTA
CCAAGCTATCATACCCCTGTAAAAATTCAAACAGCGCCGCGGCGCTTATT
TTGAGGAAATACGGTATTCGCAATCTGAAATTACTTTACTAGTGGTGTAA
CAGGAACAAGAGTACATTACTCACAAAGGCCACGAGTAAATCtattgaac
aaaaatttgactttcatTTTACGCGATTTAAGCGATCTAAGGTCTCCAAT
GTACGTcctgttttttttgaaaaattagtgAATGAATTTTTAGGTATTTT
GATAATCAAATCTTTGATGGCAAGTAGAAAAGTCCATTCCTTAACAAACG
TTACTTTACCGTACCTATAGTATACTTACATACGAGAATGTAGAGAAATG
ACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAG
CAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACG
ATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAA
cgtttgttattttcttttctttagagAGTTAAAGATTTTCTAATACTCTC
TACACACGGGTTCGAAAACCCTCCTCGGTGGAAAAACTTGCCTCTATTTG
GGggaaaagtcaaaatttagttgcAGAGTCTATGGCTACCCTACTAAAAG
GCCAGATGATCGAGTAAACAAAAATAAGCTACCAATAACTTATCTAATCT
CTCATTGAGTTAATTGCTCACTTTACACGTTTATATGATAAAGATATTag
gatatcaaaatttgaaaatcaatacTTTGAGGGATTGAATTTCGAGAATT
TGTCCTTTTTTTGAGGCTTTTGCGAcacttagagagactacttttcCCAA
TTTTCAGCCGGAATTTTCAGATTAAATCCAATTTCCGAGAATTAATGACC
CTTTGATGGAGTCGGTTTTTGATATTTCGTAATTTTGAGACCTTTTTAGG
GACTCTTTGCCAATTCATGTTtattgtacccctttgagagacttttgaga
gctaaaaaagggacccttatgacTCGCACATTGATACCTTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAGTAACAAAACTAGTGACAAAAATAGTAACTAAGTGtaacaaa
taagtattttcgattttcgacctattttgaaaattgttcgcgtgtattta
atttcgcgattttgtttttttgaaaaatttaaacggtattaaatttcgcg
aaatttggcctaaaaaatcgcgaaattaagtacctgcgaaattttgtaac
acgcgaatataataccaataaggtaagAACCATTTTGAAAGGTCGACACG
TTTGTCAGTCTATTATGTACATAAAGCCATGTGCTCGATCAAAACTTTAT
CAATTATTCGGTAAACATATCTTTATTGCCAGGTTTTTTACATCTGTGGA
GATTGTAAATCAGCATTTTATaatatttgttatttttaatttttagagcT
GTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTTA
ACTATCCTTTCCCATTGGCTAATCGGGAtgtatcttttcaaaaattattc
ctCGTGTTATGTCTGTCAacacgaaaaatcatttaagaTAACGTACCAAG
CTATCATACCCCTGTAAAAATTCAAACAGCGCCGCGGCGCTTATTTTGAG
GAAATACGGTATTCGCAATCTGAAATTACTTTACTAGTGGTGTAACAGGA
ACAAGAGTACATTACTCACAAAGGCCACGAGTAAATCtattgaacaaaaa
tttgactttcatTTTACGCGATTTAAGCGATCTAAGGTCTCCAATGTACG
TcctgttttttttgaaaaattagtgAATGAATTTTTAGGTATTTTGATAA
TCAAATCTTTGATGGCAAGTAGAAAAGTCCATTCCTTAACAAACGTTACT
TTACCGTACCTATAGTATACTTACATACGAGAATGTAGAGAAATGACAGA
AGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAGCAAAC
AAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACGATTAC
AAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAAcgttt
gttattttcttttctttagagAGTTAAAGATTTTCTAATACTCTCTACAC
ACGGGTTCGAAAACCCTCCTCGGTGGAAAAACTTGCCTCTATTTGGGgga
aaagtcaaaatttagttgcAGAGTCTATGGCTACCCTACTAAAAGGCCAG
ATGATCGAGTAAACAAAAATAAGCTACCAATAACTTATCTAATCTCTCAT
TGAGTTAATTGCTCACTTTACACGTTTATATGATAAAGATATTaggatat
caaaatttgaaaatcaatacTTTGAGGGATTGAATTTCGAGAATTTGTCC
TTTTTTTGAGGCTTTTGCGAcacttagagagactacttttcCCAATTTTC
AGCCGGAATTTTCAGATTAAATCCAATTTCCGAGAATTAATGACCCTTTG
ATGGAGTCGGTTTTTGATATTTCGTAATTTTGAGACCTTTTTAGGGACTC
TTTGCCAATTCATGTTtattgtacccctttgagagacttttgagagctaa
aaaagggacccttatgacTCGCACATTGATACCTTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gggggttggaaatttttcgaaaaattgacaaGCGGGGggccccgtttatt
tggaacctaagagtatccTTTAGTCTGAACTTTATTTTTGCAAGTTTTTT
GTCTTCTGTTTTCAGTGTTCATGCATTACAAAGACAACCCAGGAGGTTCA
ATACCCACATGGCTCATCAACTGGGCTGCTAAGGTTTGTTTTGCATAAAG
TTAATCTTttctaaaaacttgaaattgaaTTGTCCTTTTTCGTTGTAAAA
AggcatttttcatgtttttcttatCCAGATATTATTACCATTACGATTTC
AGCCCCATTTTGAATAACTTCtcttgtaatttttcttttccttgtaGAAA
GGAGTTCCAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCtatcc
aaaatatttggaaaagaaaaaaaaggggaaaaagtGAACTGACTTATTCG
AACGTCTAGGATTTTTATTATAATGCATGCATTTTATTACCACCAAATCA
CTCATCCCTCTTTGAGATATTTTACGTGTTAGCCCAGTGATTACTAGATG
ACGTTAATGATGAGTGGTCAAGGCGTCAACTCCTTACGACTTTTAGATTC
TTTTGATAGTTTTCACGGGGTCTATTGTCTGCTGGTTGGGCTTTTTTGAA
CTGATTGGAACACTGTGGGAATTCTAACAGGAAACTGACGCTTTGACCAC
TCAGCCATTGCTCCTCAGTTAAAAAGAACATTGCTTATAATATAAGCGTC
ACCTGGTACAACTAGtgtaatttctttttctttctattaaagtttttttt
cgacaAGATAAAAGTTGTATTCTCGGTGAAGTGATGTTATGAACTTCAGG
GTGTAAACAATTTTTTAGTGTTTTGGTTTACAGTCTAGTCTTTCTAGATT
TTTACGAAATGAGGGTTTTAGCTGATTCATAATTACACGGAATCATCGAT
AAGTTGAGAAtcttttttaactgtttttgtttttgtttttatgcaCAAAC
ATTTTGTCTGTTTTTCGTTAGGATATGCTCCGACTTTAGgtcatttttaa
taaaaaacatatttattaattttgagtttggaaactattctagtcgcgag
ttagggagttgctagtttcgagtttcgagttggggagttaaaaaattacc
ggctaccgaaaaagaataacatacatcaaaagtacgattttgaaagtaaa
tgtaatatgagagtaatatataacacatataatacgtataatatatatac
cacctgtaataagcttatttgccttaaacacgtgcgctgagagcatggaa
agctattttctactgtcaNaagcatcacttgcagtatgatcaatattttt
tggggaatttgtttgacaatcattgtatttaaagattttgtcaatatttt
tacaagaacgtgtcatgttgtcagtattatgacaatgacataacagaaca
taacagtactaagtattttggctttgctagccagcaTCTTACCAGTTTCA
TGAttttaaagtcaataatatgtttggtactggctaatttgaaaattgta
cttttcggctacattagtttaaattagaaaattttcggtcgccgtaaagt
tttacgaacATCCCAACttgaaactagcaactccccaactccccaactcc
ccaactcaccaactagaacattacctagactcATTAATTTTAGTACTTTC
ATAATTATAGGGTAGTTTATAAATAAACGCATCACAGATTTGTAttgtaa
tttttgtaaatgtttaTAGATGAATTTTCCTTTCCAggaataaattttca
aatttttaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047120-exon-scaffold_122-1491911889:110058..110191 | TCONS_00047120-exon-scaffold_122-1491911889:110058..110191 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1510915933:110058..110191 | TCONS_00047120-exon-scaffold_122-1510915933:110058..110191 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1575043694:110058..110191 | TCONS_00047120-exon-scaffold_122-1575043694:110058..110191 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1491911889:110578..110758 | TCONS_00047120-exon-scaffold_122-1491911889:110578..110758 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1510915933:110578..110758 | TCONS_00047120-exon-scaffold_122-1510915933:110578..110758 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1575043694:110578..110758 | TCONS_00047120-exon-scaffold_122-1575043694:110578..110758 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1491911889:114173..114240 | TCONS_00047120-exon-scaffold_122-1491911889:114173..114240 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1510915933:114173..114240 | TCONS_00047120-exon-scaffold_122-1510915933:114173..114240 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1575043694:114173..114240 | TCONS_00047120-exon-scaffold_122-1575043694:114173..114240 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1491911889:114405..115869 | TCONS_00047120-exon-scaffold_122-1491911889:114405..115869 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1510915933:114405..115869 | TCONS_00047120-exon-scaffold_122-1510915933:114405..115869 | Clytia hemisphaerica | exon |
| TCONS_00047120-exon-scaffold_122-1575043694:114405..115869 | TCONS_00047120-exon-scaffold_122-1575043694:114405..115869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_122 | supercontig | scaffold_122:110058..115869 + |
Blast
BLAST of TCONS_00047120 vs. Swiss-Prot (Human)
Match: PPCT (Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.327e-35 Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 3
Query: 51 ELYEKEDEHEGSFIYWNVNYPFPLANRDYTYIRECREMTEETTNKTPTWVILSESKQISSCPDKSGVVRVNDYKQNLSIQHKDENTTKLFMHYKDNPGGSIPTWLINWAAKKGVPSFLTEMKKASDGYPK 440
ELYE+E E + +YW V YPFP++NRDY Y+R+ R++ E VIL+ S + ++SGV+RV YKQ+L+I+ + +K+FM+Y DNPGG IP+WLINWAAK GVP+FL +M +A Y K
Sbjct: 87 ELYEQECNGE-TVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRK---IHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLK 212
The following BLAST results are available for this feature:
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