TCONS_00047112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047112
Unique NameTCONS_00047112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047112 ID=TCONS_00047112|Name=TCONS_00047112|organism=Clytia hemisphaerica|type=transcript|length=880bp
CAAGTACACTTATCTTAATTCTTGCACCAAAGATGACGCGGGTTAAGTTC
GATTATTATATTAGGGTCAAATAAAGTAAATTGTCTGTCATTGCACCGTC
AATTCGACATTTTGACACCAATCGTCCCATGTAAGCTCGGAGCCATTCCT
TTTGTGACGTAAGGGTTGATAAATGCTTATCAACAAGAGCCAAGATACCT
ATCAATCCTTGTTCCAAAAAAACAGCAGGTTAGAGCGGGCTTAGAGCTTA
TCTGGGTTGAATGAAATCCATTGGCCGATTGCATTACGACGCCATTCAAC
CTATGTAAACTTGAACCCAAGCTTTTTGTGGCATAAGGGTTGATGAGGcc
aataaaactgaaaattgcTCCTGTGAGATCGTAGTCATGTAATTTAAGAG
TCACTGATTTTACCACTAGTCCTGGAGCTAAGTAAATTATTAGCAATTTG
CGATGAGGCTGACCTGATCTCTTCCAAAAGAGATTCTCCTTCAGCAACAG
CTTTCTGCAGTTCTTCATAAGCAacctcattttcattttcaagctgTTTA
AGGCTTTTCATTTGAAGTTCCGTGGTTGATTTCTCACTTGGTAAAGCATC
TATTAAATGATCAATATCTTTGACAGTGCGTGCAATCATGGATGCGAAAA
ATTGGGAATAATTTTCTTCAGGTTGTGAAGGTTGTTGTGGATCAGGAGGA
TTGTTTGGATCTATTGGCTTGttgttttcatttgtttgttgttgtggagg
ttgttgttgctgttgttggtTATTCGGATGAGCAGTTTGCTGTATTACAC
CAATGCTATCACAAAAACACTCAGCCAATTTATTCACTTGATCTTGAAGT
TGCGTCAAACGAtcagccattttttttttt
Run BLAST on NCBI

protein sequence of TCONS_00047112-protein

>TCONS_00047112-protein ID=TCONS_00047112-protein|Name=TCONS_00047112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
KKKMADRLTQLQDQVNKLAECFCDSIGVIQQTAHPNNQQQQQQPPQQQTN
ENNKPIDPNNPPDPQQPSQPEENYSQFFASMIARTVKDIDHLIDALPSEK
STTELQMKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLL
SSRTSGKISDS
Run BLAST on NCBI

transcript from alignment at scaffold_121:12366..13245

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047112 ID=TCONS_00047112|Name=TCONS_00047112|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at scaffold_121:12366..13245 (Clytia hemisphaerica)
aaaaaaaaaaatggctgaTCGTTTGACGCAACTTCAAGATCAAGTGAATA
AATTGGCTGAGTGTTTTTGTGATAGCATTGGTGTAATACAGCAAACTGCT
CATCCGAATAaccaacaacagcaacaacaacctccacaacaacaaacaaa
tgaaaacaaCAAGCCAATAGATCCAAACAATCCTCCTGATCCACAACAAC
CTTCACAACCTGAAGAAAATTATTCCCAATTTTTCGCATCCATGATTGCA
CGCACTGTCAAAGATATTGATCATTTAATAGATGCTTTACCAAGTGAGAA
ATCAACCACGGAACTTCAAATGAAAAGCCTTAAAcagcttgaaaatgaaa
atgaggtTGCTTATGAAGAACTGCAGAAAGCTGTTGCTGAAGGAGAATCT
CTTTTGGAAGAGATCAGGTCAGCCTCATCGCAAATTGCTAATAATTTACT
TAGCTCCAGGACTAGTGGTAAAATCAGTGACTCTTAAATTACATGACTAC
GATCTCACAGGAgcaattttcagttttattggCCTCATCAACCCTTATGC
CACAAAAAGCTTGGGTTCAAGTTTACATAGGTTGAATGGCGTCGTAATGC
AATCGGCCAATGGATTTCATTCAACCCAGATAAGCTCTAAGCCCGCTCTA
ACCTGCTGTTTTTTTGGAACAAGGATTGATAGGTATCTTGGCTCTTGTTG
ATAAGCATTTATCAACCCTTACGTCACAAAAGGAATGGCTCCGAGCTTAC
ATGGGACGATTGGTGTCAAAATGTCGAATTGACGGTGCAATGACAGACAA
TTTACTTTATTTGACCCTAATATAATAATCGAACTTAACCCGCGTCATCT
TTGGTGCAAGAATTAAGATAAGTGTACTTG

Coding sequence (CDS) from alignment at scaffold_121:12366..13245

>TCONS_00047112 ID=TCONS_00047112|Name=TCONS_00047112|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_121:12366..13245 (Clytia hemisphaerica)
aaaaaaaaaatggctgaTCGTTTGACGCAACTTCAAGATCAAGTGAATAA
ATTGGCTGAGTGTTTTTGTGATAGCATTGGTGTAATACAGCAAACTGCTC
ATCCGAATAaccaacaacagcaacaacaacctccacaacaacaaacaaat
gaaaacaaCAAGCCAATAGATCCAAACAATCCTCCTGATCCACAACAACC
TTCACAACCTGAAGAAAATTATTCCCAATTTTTCGCATCCATGATTGCAC
GCACTGTCAAAGATATTGATCATTTAATAGATGCTTTACCAAGTGAGAAA
TCAACCACGGAACTTCAAATGAAAAGCCTTAAAcagcttgaaaatgaaaa
tgaggtTGCTTATGAAGAACTGCAGAAAGCTGTTGCTGAAGGAGAATCTC
TTTTGGAAGAGATCAGGTCAGCCTCATCGCAAATTGCTAATAATTTACTT
AGCTCCAGGACTAGTGGTAAAATCAGTGACTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030037XLOC_030037Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047112-proteinTCONS_00047112-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047112-exon-scaffold_121-1491911889:12366..13245TCONS_00047112-exon-scaffold_121-1491911889:12366..13245Clytia hemisphaericaexon
TCONS_00047112-exon-scaffold_121-1510915933:12366..13245TCONS_00047112-exon-scaffold_121-1510915933:12366..13245Clytia hemisphaericaexon
TCONS_00047112-exon-scaffold_121-1575043694:12366..13245TCONS_00047112-exon-scaffold_121-1575043694:12366..13245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_121supercontigscaffold_121:12366..13245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.1964	41.7884	42.0243	35.2503	6.92437	4.26561	6.05167	7.92702	6.24478	7.7777	10.1957	5.75393	8.71696	8.85531	9.94208	13.2168	12.1442	15.1441	7.209	6.77493	13.2684	12.9467	24.5329	23.5437	4.66915	3.55033	14.7481	10.4166	15.9062	18.0818
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
Blast
[Close]
BLAST of TCONS_00047112 vs. Swiss-Prot (Human)
Match: MED21 (Mediator of RNA polymerase II transcription subunit 21 OS=Homo sapiens GN=MED21 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.350e-25
Identity = 71/158 (44.94%), Postives = 90/158 (56.96%), Query Frame = -2 
Query:  397 MADRLTQLQDQVNKLAECFCDSIGVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYSQFFASMIARTVKDIDHLIDALPSEKSTTELQMKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLLSSRTSGKISDS 870
            MADRLTQLQD VN LA+ FC++IGV+QQ   P +    Q    +    N                     Y+Q FA++IART KDID LID+LPSE+ST  LQ  SL +LE EN  A   L+  V  G+ LLE+I+SA + IA + L +R SG  S S
Sbjct:    1 MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEE-----------------YAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTR-SGTHSQS 140
The following BLAST results are available for this feature:
BLAST of TCONS_00047112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED217.350e-2544.94Mediator of RNA polymerase II transcription subuni... [more]
back to top