TCONS_00047108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047108
Unique NameTCONS_00047108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047108 ID=TCONS_00047108|Name=TCONS_00047108|organism=Clytia hemisphaerica|type=transcript|length=1655bp
ACAGGTGTcaaataaaaacgaaaatagattaaaaaagatattagatttga
aggtttgagaggatgatatagttttgtttttggactttgagTGCAATACT
ATGGGAGGTTGTGTCAGTCGCACTGATGGTACTAGATCAAGTTCAGCTGG
TGGCCAATTTGGAACAGGGGGGAACCCAGCTGCAGTGACTATCGGTAAAA
ACAAGCCTCTGTCTGGAGACCGTCCAAAATGGCAGTCAGAGACAGCCATA
ACAATGGGACAATTACGAAGTAAGCGAGATGAGTATTGGGAAACACAGCC
TGCTTTTGATGGGAGAAGGGAAATTTGGGATGCGCTGCGAGCAGCGTGTG
AAACAGAGGATCAGGCTCTTGCACAGGCTATTGTAGACGGTGCAAACATC
ACGCTTCCTACAGggtCACTAGCAGACGCATATGACGAGCTAGGTAATCA
TTACGTCATCCCTGTATATTGTATAAGCCTTCCAACCAATCTGATCGCCA
GTGATGACGAAAATGTGACGTCAGATGGGTCGAAAGNCCAACCAATCTGA
TCGCCAGTGATGACGAAAATGTGACGTCAGATGGGTCGAAAGAGAACATA
GCAGAGCAAGCTTCTGGTGAAGACATGCTCATCAAAATAAGACTTTCAAC
ACAACAAAAAGACATTAAAATGAACGTTCGTACTGGCGAAACTATAAGCT
CTATCAAAAAACGCGTCCAGGCTGATCATAATTTTCCGCCTAGTAAACAA
CGCTGTTTCTTCGCTGGCAAATTACTTTATGATAAGTTGACGATCGCAGA
TACAAAAATTTCTAAGGGTTTTGTAATCCAGATTATTATTAATACTGAAG
ATTAATCTTTGAATCTGGGTTTGCAGAATGATTTATGATGGAGTAACGTG
GCCCTATTGGAAGAGTTGATAATCGCTACTGGGCTGGTTGATCATCTGGT
TACAAAAGGAACCAGGCGCGTCAGATTTGTCAATAATGGCTTTTAAAAAT
GGCTGACATATCTGATTTAACAACAGTAAATTTTGAGTTCATTTAAAGAA
AATACACACAGTGGAGAAAAATGATATATGGTTATGGTCACCGATAAGAA
AGTTATGTTAATGCTTTTAGCTTATTCTGATTGGTCCATCAAATGTTGTC
ATTAAAATGAAAGCTTTGGATTAAAATGTCGAGTTAACTACAGACTAACT
TTGAATGCTGGAGGATTTAATTGGCACTGTTTATGTATAGAAAacgggaa
ttttttaaaattggatttttttttattttagaacaCCTTTAATGAATATT
ATTTTTGTTCATTAAAGAAAGATAATTTAAGTTATTcaaaatggaaatat
tttactttattATATAcccgtaggcaaaaacagccattgaataattcctg
ttatagccctgcaatacaactgtcaatcatttttgagaaaactgaTTGGA
TAATTGATGTCACGTGGCCGGTTGATATTTCCCCATAGTGACCAGTTATG
AAATTAACATCTTTAGAATGTTAATTTTTACGAtgtagaacaatagaata
cacttgttaattatttttattactttattttgcATGGCTATAAATGGATT
ATTAACCTCAGTAAGCCTGTCTCTCTGGAAAATATTGACCTCGGGCACAC
GTGCC
Run BLAST on NCBI

protein sequence of TCONS_00047108-protein

>TCONS_00047108-protein ID=TCONS_00047108-protein|Name=TCONS_00047108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MGGCVSRTDGTRSSSAGGQFGTGGNPAAVTIGKNKPLSGDRPKWQSETAI
TMGQLRSKRDEYWETQPAFDGRREIWDALRAACETEDQALAQAIVDGANI
TLPTGSLADAYDELGNHYVIPVYCISLPTNLIASDDENVTSDGSKXQPI
Run BLAST on NCBI

transcript from alignment at scaffold_121:81550..96381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047108 ID=TCONS_00047108|Name=TCONS_00047108|organism=Clytia hemisphaerica|type=transcript|length=14832bp|location=Sequence derived from alignment at scaffold_121:81550..96381+ (Clytia hemisphaerica)
ACAGGTGTcaaataaaaacgaaaatagattaaaaaagatattagatttga
aggtttgagaggatgatatagttttgtttttggactttgagTGCAATACT
ATGGGAGGTTGTGTCAGTCGCACTGATGGTACTAGATCAAGTTCAGCTGG
TGGCCAATTTGGAACAGGGGGGAACCCAGCTGCAGGTAGGTGAAGTATCC
AATTTTCGATATGTCGGAATTGgatgaaccttttcaagtcaaaaaaaatt
attgaaaatgtattGATACTTCCCTATACTCCCCGGAAAAAATACCCTTG
GAAAGATTCtcttcataccttaaagtgagggtaNTTTTTCCCATCCTAAA
ACTTCACTTTagaatatttgagaaaattatgaattttgataaaacaattt
tgtatatgttttaatgtttatttctagttttcaatttcacacagaaatat
tatatacatagcacttcattttattttgatttttatacaTAGCACTTCTA
TCTACATTAATTTATAAAACGATTTTACAATGATAAATGGTATTATGAAT
GATATGAAATATTATTCTCTTACCAAGTTTGTGTAGTAACCAGGATCTGC
CAGGAGGTAATACTGATAATAATTGATGCCTCTGATTGGTTAACAATGTT
AACAGTTTAGATAATAAGCCTCATAAGTTGTTTTTAAATCTTAggattct
tttcttttctttttcagaaaatccttgaaaaatctagatattttgcccaa
aaatgctagaattttgaccattttttgcacgaaaagggttgaaaatttgG
GGTAatatgcactctaagggtatgactttcaCAGAATTttaatgcactgt
aagggtgcaattttaaaagccaatttttggcccacACATACTGTCAGTCC
GCAAACCAAGTgcaaacacccccccccccggattttTNGacaaactaaaa
tcagtcttttaccccctcggaaaaatgaaaaaaggaatattctgctcgga
ttaccctctggaaatcgCATTCTGTTTTAAATGAATAAAGTTTAATATCG
AAATGTAATCAATTAAAATCGTCATTCTCGATTGACTTTTTTATTGTTTC
CATAGTGACTATCGGTAAAAACAAGCCTCTGTCTGGAGACCGTCCAAAAT
GGCAGTCAGAGACAGCCATAACAATGGGACAATTACGAAGTAAGCGAGAT
GAGTATTGGGAAACACAGCCTGCTTTTGATGGGAGAAGGGAAATTTGGGA
TGCGCTGCGAGCAGCGTGTGAAACAGAGGATCAGGCTCTTGCACAGGCTA
TTGTAGACGGTGCAAACATCACGCTTCCTACAGGTAAGGGACTGGAACAG
GTAAAACGGAATTTTTTCTACCACTCTTATCAGCTTGGACCCATAGAGCT
TCTCGAATTAGGAATATATATTTGGAATCTTTTCGGGTATTCGTCTACAG
AGGAGCGCGAACttgcttttgaaaataatagTTTTGATTTGAATTACTTC
AGGATTACTAGCGGATGTACAAAAGCCCGCTTGGATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcgggggggggggg
gtactagggttgcgagctgacggggggactttcgaactttggacccttac
cgggactaaaaaagagaaaatcaaggaaaattttgtgaattttacgaccc
ttagcgggactaatttgaccaattttgaccaaatttcgatctttcagggg
gtgaaaagttgaaattttcctaatttttcgacccttagcgggacttcgga
agtccaaaaaaggtacccttaagggcggcacataccgtaccctccatttg
cctaagtaccccccccccccccggggcNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNCCCCCGGGGGTGGCCGCACATACCACTGCCCCCCCGGGGG
TTAGTCtggttagggtcagggttgaaGTCAAGAAAGTATAGATTGCCAAA
AATTTTACTTCCAGGAATTAGTTCCAAAAGTGAAAGTTAGTCACGGGATT
CCTTATAATCCGGGGGGAATGCAAGAAAAACTTACATAGTTCTCTTTCTG
TAATagctcaaaaaatttaaaaattccccaaaaagtcgaataaaaataca
tatttttatgTTAATATTGCTTTAAAATATAATTGTTGAATGAGTAAGTT
ATACATATTACCAAATATTTGGAAACCTGTACCCCCGTGCACTAGCGGGT
TATCCTTGGTCAGACGTTTCAAATAAAATGCTTCATCATAATCACATCTA
TTGATCAAAGAGAGTTCAGCCGATGAAAAACTTAGAaggaaaacattaaa
aatccaaaatgtctGACTTTTGGCTGgctgagaatttttttcaatctcgt
ttttcattttctggatTTTCCTTCGAACTCCGGACAAAAAATCATTACAA
CCAAGAATGTCGTCGATCATTTGGGTATATTCTCGTtcttttatatcatt
tttattCACGTTAACAACTTTTAGGCCTCTCGAAGAATGAAAATAAACCA
GCGCTGCTGCGCAGCGCTGTGGCCTGTTTTCAGAGGATGTCATGGTTGCC
CCCAAGGAAGGAAAATTTCCAACATAAAAAACTCTGTCCCTAAGATCCGA
TCCGTTTCCCACCACAAAAAAAGCcagaaaaacacagaaaaacaggtaaa
tatagccagttttcaatgattttgtCCCTGAACTGtagatattatcaaaa
ttttgcccCTGCCCTTAAAAAGTGAGCAATCTCTGCCCTCAAGATCTCGA
TGATTTCTGCCATACTCTGAAAActggcgctgtggtatagtggtcattga
ccttggttactgcacaggcgactgaggttcgattcccactcgcagcggtt
cacttggcaagtgaatgaaccttcgNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgc
aagtgaatgaaccttcgcccgggtcaacccatgccatgtgaggggaattg
ggtagtcagtccaaggtgctgacggggcgctcattgaaagcgtttATAGT
TGCgagaaaataggcctcaaagcctcctgcaactcaaccaaatagaaata
gaaatagagcTGCGCTGGCTCGCCGCCGGGAAGGGAAGGATCAGCCCAAA
GCGAAATGCCAGTGATACATGTTTTTACAAGATAAAGAATATCGATAGAA
AAATGATATGAGTTGTTTTGTTCTAAAATGATCTTTTTCACCTTAGTAAG
TaactatttatttaccatttgaaCACTTAAAATACATGAGATGGtatcca
caaaataaaaaaggatggagaccgccttatagcctggactacacgttttt
ttttttataaggaacacgtttataaggaactcgaggctgaaaatggttca
aaaaataaggaattgttaaggaactgctcagacTGAGGANNNNNNNNNNN
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NNNNNNNNNNNNNNATTCTGGAGCCTCCATCGCCTGTGACTCCTGTGACC
AATGGTTCCATCTAAATTGCACATCTATGTGTCATCAAATATACAAATGT
CACGAGAAAGAAGAAAGTCTAGAGTGGCTTTGTCGAAATTGTGCGCTTAA
AAAGACATTTCAAATAGCTTATTTGACAGTTCAATATCATCCAACAGCTC
ATCAGGCAGTAACAACAGCAGCATACCCAAAAAGAAAGCTTAACGTCTCA
GTATCTCAGTATGCAATTTCGAAAGCATATGGAACAAACAACTCTTGCTG
GGGAATTACCTTCATAATAACGATATCTACATTCTCATTGGCACAGAATC
TCATCTTTCCTGCAACTTAAAGAACTCAGAATTTCTTTCCAAATACTATA
TGGCCTCTCGTCATGATCGAAATGATGGTTGGGGTGGTGTAATCATAATT
TACAAAAACACTTTGCTTGTTGTAGAGGAACTACAGATTAATAAGCAAGC
TGAAATCGTGTCAATCAAAGTAGCTTCCTTTGGAAAACCAGTAATATTCA
CAGCATGCTATCGCCCACCTAAGAGTACAGAGGATTACAATACCAAGCTT
ATCAAAGGTATTTCCAGTGTCATAAGAAAGTACAAACTGAATCCTCATTG
GGTATGTGGTGATTTTAATCTTCCTGATGTTGATTGGGTGTCAAATACCA
TCAATGGAAATCAGTATTCAAAGAAATTGAATCAGAACTTTCTCGAAACA
TTTGACCTATTCAATCTATCACAGATTGTAAACTTTACAACACGGAAAGG
TAACACTTTAGATTTAGTACTTACAAACTGCCCTGGCCTTACTGAAAGTT
GTGAGCCACATCCAGGATTTAGTGACCATGAGACTTCCATAATTGCAGAC
ATTTTCTGCCACCCACAAAAAATTAAACTGACCCACAGAAATCCATCTAT
GGCATCGTGCTGACATTGACGCTTTGCAGAAAGATATAAAAAACGACATT
GAAAAATTCTGTACTTCGACCACAACAGAAACAGATATAAATANNNNNNN
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aagttgttcgattgacaccgtctggtatAAACCCCTTAACTGCTAAAACC
CAGTGTAGAAAACCAGGTTTTGCTGGAAAATCTCAAGAACCACATGACCT
ATACTCTCAATAATAAGCAACATTTTATTAAGAATAACTTGCATATTTTT
ACTCTaaaacaaaccaaacaaatCCCTGCCAAAACCTCATTCCATATGAG
AGCTATTTTACTGGGGTGCAAACTACTTTTACCATTCGAATAGCTCAACT
AAATTGATGTTACTTTATCACTTCAATGCAAGGGTATCTAACTATTTCAA
TAGAGCACTCTACCCTTATGTTTTTGATACCGTCGTTGCAAACTTGTTTC
CAAAGGGCACGAGGAAACCCGGGGCCTTCAGCATAGTCATATATGTCAAA
AGAAGCCATAAGTTacacaaaagaaattttccttgtATCATCAGTATGAA
CTGATATGTAGTCCAATTATGATATGAGAAAGGACAAAAAATGTCGATAA
CAAAATAATCCAATCATAGTATTTTCCATTTTCCAAGCACTTCTCCTTAT
ACCATCACCTTGGCCAGAAAAATTGAGAATGCAGGTAAATGTCCGAAATT
GGTAAAAGTaatgatataaaaagcttctcaaaaataacaGTTTTTACTTC
AAATAATTTTAGACTCTGAAACTATTCCCTGGCATTTGAAGAACTATGAG
ATTTAGCTGGATATTTGGAATCTGGATACTAGTGACTTTTTTAAGACTTC
AAGAATGTTTGACctacttttttaaaataaaaacatattcaggTGACCAA
ATTTCATTTAACAGGgcaaaattatgaaatataaattaaaaaatttgagc
tcagaattcaaaatttcgtaaGCCATCACTTTGTAACTTAGAATTTTAAC
AAATGAATAATCTTgcatatattttataaacaACGTTATGTAATATCTAG
ATGTGATGGGGATACATAGCTTAACGGCACAAGGGACGAAGGGCATTGTT
TACGTCAATGGAATGAAGTCAGTTGGTATTTGTTTGAATAATATGTTCTT
GCATTTCTGTCTTTTAGGGGTTACGGTTTTGTCAAGGTATTTCAACCCAT
GGTATTATACTGTCAAAGATTTTTAGAATTTAGAGGATTGatatttcttc
cttttttctcGAGTGTCTATATTGCATTGGCAGATTTCATTAACAAAGCA
TCAAATAAATGACATCTCTTTATcaataaatacaaaatcaatCTAAGAAA
TCAGCTAAgtaaatacacctttcccgaattgttatttaggctttttgact
tttttgtttaaatgtttgaatgtttctatttagtttcataaaattgtatG
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaatttaataaatgaccc
atcaaaagtTAAGTTTATATATCTTCTTTCCAAttgaataggaatggttc
ttttaagatttttagatttcggtaaaattagttttaaagagagaaacttt
tttgtggcgcacccggTAtttgaaatcttttctttttcagggtCACTAGC
AGACGCATATGACGAGCTAGGTAATCATTACGTCATCCCTGTATATTGTA
TAAGCCTTCCAACCAATCTGATCGCCAGTGATGACGAAAATGTGACGTCA
GATGGGTCGAAAGNCCAACCAATCTGATCGCCAGTGATGACGAAAATGTG
ACGTCAGATGGGTCGAAAGAGAACATAGCAGAGCAAGCTTCTGGTGAAGA
CATGCTCATCAAAATAAGACTTTCAACACAACAAAAAGACATTAAAATGA
ACGTTCGTACTGGCGAAACTATAAGCTCTATCAAAAAACGCGTCCAGGCT
GATCATAATTTTCCGCCTAGTAAACAACGCTGTTTCTTCGCTGGCAAATT
ACTTTATGATAAGTTGACGATCGCAGATACAAAAATTTCTAAGGGTTTTG
TAATCCAGATTATTATTAATACTGAAGATTAATCTTTGAATCTGGGTTTG
CAGAATGATTTATGATGGAGTAACGTGGCCCTATTGGAAGAGTTGATAAT
CGCTACTGGGCTGGTTGATCATCTGGTTACAAAAGGAACCAGGCGCGTCA
GATTTGTCAATAATGGCTTTTAAAAATGGCTGACATATCTGATTTAACAA
CAGTAAATTTTGAGTTCATTTAAAGAAAATACACACAGTGGAGAAAAATG
ATATATGGTTATGGTCACCGATAAGAAAGTTATGTTAATGCTTTTAGCTT
ATTCTGATTGGTCCATCAAATGTTGTCATTAAAATGAAAGCTTTGGATTA
AAATGTCGAGTTAACTACAGACTAACTTTGAATGCTGGAGGATTTAATTG
GCACTGTTTATGTATAGAAAacgggaattttttaaaattggatttttttt
tattttagaacaCCTTTAATGAATATTATTTTTGTTCATTAAAGAAAGAT
AATTTAAGTTATTcaaaatggaaatattttactttattATATAcccgtag
gcaaaaacagccattgaataattcctgttatagccctgcaatacaactgt
caatcatttttgagaaaactgaTTGGATAATTGATGTCACGTGGCCGGTT
GATATTTCCCCATAGTGACCAGTTATGAAATTAACATCTTTAGAATGTTA
ATTTTTACGAtgtagaacaatagaatacacttgttaattatttttattac
tttattttgcATGGCTATAAATGGATTATTAACCTCAGTAAGCCTGTCTC
TCTGGAAAATATTGACCTCGGGCACACGTGCC

Coding sequence (CDS) from alignment at scaffold_121:81550..96381+

>TCONS_00047108 ID=TCONS_00047108|Name=TCONS_00047108|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_121:81550..96381+ (Clytia hemisphaerica)
ATGGGAGGTTGTGTCAGTCGCACTGATGGTACTAGATCAAGTTCAGCTGG
TGGCCAATTTGGAACAGGGGGGAACCCAGCTGCAGTGACTATCGGTAAAA
ACAAGCCTCTGTCTGGAGACCGTCCAAAATGGCAGTCAGAGACAGCCATA
ACAATGGGACAATTACGAAGTAAGCGAGATGAGTATTGGGAAACACAGCC
TGCTTTTGATGGGAGAAGGGAAATTTGGGATGCGCTGCGAGCAGCGTGTG
AAACAGAGGATCAGGCTCTTGCACAGGCTATTGTAGACGGTGCAAACATC
ACGCTTCCTACAGggtCACTAGCAGACGCATATGACGAGCTAGGTAATCA
TTACGTCATCCCTGTATATTGTATAAGCCTTCCAACCAATCTGATCGCCA
GTGATGACGAAAATGTGACGTCAGATGGGTCGAAAGNCCAACCAATCTGA
ATGGGAGGTTGTGTCAGTCGCACTGATGGTACTAGATCAAGTTCAGCTGG
TGGCCAATTTGGAACAGGGGGGAACCCAGCTGCAGTGACTATCGGTAAAA
ACAAGCCTCTGTCTGGAGACCGTCCAAAATGGCAGTCAGAGACAGCCATA
ACAATGGGACAATTACGAAGTAAGCGAGATGAGTATTGGGAAACACAGCC
TGCTTTTGATGGGAGAAGGGAAATTTGGGATGCGCTGCGAGCAGCGTGTG
AAACAGAGGATCAGGCTCTTGCACAGGCTATTGTAGACGGTGCAAACATC
ACGCTTCCTACAGggtCACTAGCAGACGCATATGACGAGCTAGGTAATCA
TTACGTCATCCCTGTATATTGTATAAGCCTTCCAACCAATCTGATCGCCA
GTGATGACGAAAATGTGACGTCAGATGGGTCGAAAGNCCAACCAATCTGA
ATGGGAGGTTGTGTCAGTCGCACTGATGGTACTAGATCAAGTTCAGCTGG
TGGCCAATTTGGAACAGGGGGGAACCCAGCTGCAGTGACTATCGGTAAAA
ACAAGCCTCTGTCTGGAGACCGTCCAAAATGGCAGTCAGAGACAGCCATA
ACAATGGGACAATTACGAAGTAAGCGAGATGAGTATTGGGAAACACAGCC
TGCTTTTGATGGGAGAAGGGAAATTTGGGATGCGCTGCGAGCAGCGTGTG
AAACAGAGGATCAGGCTCTTGCACAGGCTATTGTAGACGGTGCAAACATC
ACGCTTCCTACAGggtCACTAGCAGACGCATATGACGAGCTAGGTAATCA
TTACGTCATCCCTGTATATTGTATAAGCCTTCCAACCAATCTGATCGCCA
GTGATGACGAAAATGTGACGTCAGATGGGTCGAAAGNCCAACCAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030033XLOC_030033Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047108-proteinTCONS_00047108-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047108-exon-scaffold_121-1491911889:81550..81734TCONS_00047108-exon-scaffold_121-1491911889:81550..81734Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1510915933:81550..81734TCONS_00047108-exon-scaffold_121-1510915933:81550..81734Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1575043694:81550..81734TCONS_00047108-exon-scaffold_121-1575043694:81550..81734Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1491911889:82655..82882TCONS_00047108-exon-scaffold_121-1491911889:82655..82882Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1510915933:82655..82882TCONS_00047108-exon-scaffold_121-1510915933:82655..82882Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1575043694:82655..82882TCONS_00047108-exon-scaffold_121-1575043694:82655..82882Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1491911889:95140..96381TCONS_00047108-exon-scaffold_121-1491911889:95140..96381Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1510915933:95140..96381TCONS_00047108-exon-scaffold_121-1510915933:95140..96381Clytia hemisphaericaexon
TCONS_00047108-exon-scaffold_121-1575043694:95140..96381TCONS_00047108-exon-scaffold_121-1575043694:95140..96381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_121supercontigscaffold_121:81550..96381 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.33005	5.09615	2.80577	1.93969	41.5186	31.8185	47.157	51.0278	31.8054	34.8755	28.485	23.2719	19.1857	18.6905	19.8366	20.3621	22.8388	21.5023	22.1934	26.1733	17.4356	16.2717	14.7981	17.626	16.0939	20.4289	25.9724	19.5891	17.6191	17.6083
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032752UBD
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043130 ubiquitin binding
Blast
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BLAST of TCONS_00047108 vs. Swiss-Prot (Human)
Match: UBTD2 (Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.572e-51
Identity = 77/151 (50.99%), Postives = 101/151 (66.89%), Query Frame = 2 
Query:  101 MGGCVSRTDGTRSSSAGGQFGTGGNPAAVTIGKNKPLSGDRPKWQSETAITMGQLRSKRDEYWETQPAFDGRREIWDALRAAC---ETEDQALAQAIVDGANITLPTGSLADAYDELGNHYVIPVYCISLPTNLIASDDENVTSDGSKXQP 544
            MGGCV     +  S      GTG     V +G+N+PL  ++PKW+S+  +T GQLRSKRDE+W+T PAF+GR+EIWDAL+AA    E+ D  LAQAI+DGANITLP G+L + YDELGN Y +PVYC++ P N+I    +  T D  +  P
Sbjct:    1 MGGCVGAQHDSSGSLNENSEGTG-----VALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEEKSDIETLDIPEPPP 146

HSP 2 Score: 64.6994 bits (156), Expect = 4.572e-51
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  613 SGEDMLIKIRLSTQQKDIKMNVRTGETISSIKKRVQADHNFPPSKQRCFFAGKLLYDKLTIADTKISKGFVIQIIIN 843
            SG +  +++RLST  KD+K+ VR+ +T+  +K+R+ A     P  QR FF+G+ L DK+   + KI K +V+Q+I++
Sbjct:  148 SGYECQLRLRLSTG-KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 223
The following BLAST results are available for this feature:
BLAST of TCONS_00047108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBTD24.572e-5150.99Ubiquitin domain-containing protein 2 OS=Homo sapi... [more]
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