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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047101 ID=TCONS_00047101|Name=TCONS_00047101|organism=Clytia hemisphaerica|type=transcript|length=1647bp
aggttataaaaaaagtttagaaaaaaaaaaatggctgaTCGTTTGACGCA
ACTTCAAGATCAAGTGAATAAATTGGCTGAGTGTTTTTGTGATAGCATTG
GTGTAATACAGCAAACTGCTCATCCGAATAACCAGCAACAGCAGCAACAA
CCTCCACAACaacaaacaaatgaaaacaaCAAGCCAATAGACCCAAACAA
TCCTCCTGATCCACAACAACCTGAAGAAAATTATTCCCAATTTTTCGCAT
CCATGATTGCACGCACTGTCAAAGATATTGATCATTTAATAGATGCTTTA
CCAAGTGAGAAATCAACCACGGAACTTCAAATGAAAAGCCTTAAAcagct
tgaaaatgaaaatgaggtTGCTTATGAAGAACTGCAGAAAGCTGTTGCTG
AAGGAGAATCTCTTTTGGAAGAGATCAGGTCAGCCTCATCACAAATTGCT
AATAATTTACTTAGCTCCAGGACTAGTGGTAAAATCAGTGACTCTTAAAT
TACATGACTACGATCTCACAGGAgcgattttcagttttattgGCCTCGTC
AACCCTTATGCCACAAAAAGCTTGGGTTCAAGTTTACATAGGTTGAATGA
CGTCGTAATGCAATTGGCCAATGGAACGGCTTCCGAAATTTGATTTCATT
CCACCCAGATAAGCTCAAACCTCTGATCCCTTGAATGCTGTTTTTTTGGA
TTGATAGGTGTCTTGGCTCTTGTTGATAAGCATTTATCAACCCTTACGTC
ACAAAAGGAATGGCTCCGAGCTTACATGGGACGATTGGTGTCAAAATGTC
GAATTGACAGACAATTTACTTTATTTGACCCTAATATAATAATCGAACTT
ATCCCGCGTCATCTTTGGTGCAAGAATTGAGATAAGTGCACTTGTCCGCG
TAGATTGGTGCGAGGATTTCGTTAGACCTTTCTTATCATACCCTCAGGTG
CCTAACCGCCCCTGCcctctttttatttaaattccTCAAGCTCTTGACCA
TTATTAGGACCCCgtcgtttattaattttgaaaacattgcTTTTAGCTGT
CAAGAGAATTGCCCCTTGTTTTGCTTTAAACGGCCTGGTTTCCCAACACA
ATCCCCTAATCCCCTATCAAGGCACTTAAGAGTAAGGTAGAGATggaaaa
aaacatgaaactcGAAGTATAGAAGACAGAATTTACAACAAAAAAAACca
cgaagatgaaaaagaaaacctcAGTGACGTATTGacaaagaaagagaaga
agaaaaaaagaacgaTAAAATTTCCCTCTTTTTGATAAGCCAATTTCATT
GGAGACACTGACTTTAATAAATCATCGACTTTTAGGAAAAAAACAGTGGA
GAGTTTTTTTGTACATTCATTCTACGTGATGATGGAAGTTTCTAAGTTCT
TGTGTAAGAAATCTTTTCCATCGAACATTGCAGTGATCTTAAACTTTCTA
TGtaaatttttatattgattatCTATATTacaattcaaaccaaatgtctG
TTTTTAGGGGTTGAATTTTTAAGCCCCTCTCACCCCGATGTCAATTATGT
TTGTCTGCTTTAGAGAATGCATCTAACGTTTCTCGATATTCATACCTAGA
ATCACAAAATTTATATTTGCTGGAATAGTGACAACACTACCTGAAAA Run BLAST on NCBI transcript from alignment at scaffold_121:10531..12177+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047101 ID=TCONS_00047101|Name=TCONS_00047101|organism=Clytia hemisphaerica|type=transcript|length=1647bp|location=Sequence derived from alignment at scaffold_121:10531..12177+ (Clytia hemisphaerica)
aggttataaaaaaagtttagaaaaaaaaaaatggctgaTCGTTTGACGCA
ACTTCAAGATCAAGTGAATAAATTGGCTGAGTGTTTTTGTGATAGCATTG
GTGTAATACAGCAAACTGCTCATCCGAATAACCAGCAACAGCAGCAACAA
CCTCCACAACaacaaacaaatgaaaacaaCAAGCCAATAGACCCAAACAA
TCCTCCTGATCCACAACAACCTGAAGAAAATTATTCCCAATTTTTCGCAT
CCATGATTGCACGCACTGTCAAAGATATTGATCATTTAATAGATGCTTTA
CCAAGTGAGAAATCAACCACGGAACTTCAAATGAAAAGCCTTAAAcagct
tgaaaatgaaaatgaggtTGCTTATGAAGAACTGCAGAAAGCTGTTGCTG
AAGGAGAATCTCTTTTGGAAGAGATCAGGTCAGCCTCATCACAAATTGCT
AATAATTTACTTAGCTCCAGGACTAGTGGTAAAATCAGTGACTCTTAAAT
TACATGACTACGATCTCACAGGAgcgattttcagttttattgGCCTCGTC
AACCCTTATGCCACAAAAAGCTTGGGTTCAAGTTTACATAGGTTGAATGA
CGTCGTAATGCAATTGGCCAATGGAACGGCTTCCGAAATTTGATTTCATT
CCACCCAGATAAGCTCAAACCTCTGATCCCTTGAATGCTGTTTTTTTGGA
TTGATAGGTGTCTTGGCTCTTGTTGATAAGCATTTATCAACCCTTACGTC
ACAAAAGGAATGGCTCCGAGCTTACATGGGACGATTGGTGTCAAAATGTC
GAATTGACAGACAATTTACTTTATTTGACCCTAATATAATAATCGAACTT
ATCCCGCGTCATCTTTGGTGCAAGAATTGAGATAAGTGCACTTGTCCGCG
TAGATTGGTGCGAGGATTTCGTTAGACCTTTCTTATCATACCCTCAGGTG
CCTAACCGCCCCTGCcctctttttatttaaattccTCAAGCTCTTGACCA
TTATTAGGACCCCgtcgtttattaattttgaaaacattgcTTTTAGCTGT
CAAGAGAATTGCCCCTTGTTTTGCTTTAAACGGCCTGGTTTCCCAACACA
ATCCCCTAATCCCCTATCAAGGCACTTAAGAGTAAGGTAGAGATggaaaa
aaacatgaaactcGAAGTATAGAAGACAGAATTTACAACAAAAAAAACca
cgaagatgaaaaagaaaacctcAGTGACGTATTGacaaagaaagagaaga
agaaaaaaagaacgaTAAAATTTCCCTCTTTTTGATAAGCCAATTTCATT
GGAGACACTGACTTTAATAAATCATCGACTTTTAGGAAAAAAACAGTGGA
GAGTTTTTTTGTACATTCATTCTACGTGATGATGGAAGTTTCTAAGTTCT
TGTGTAAGAAATCTTTTCCATCGAACATTGCAGTGATCTTAAACTTTCTA
TGtaaatttttatattgattatCTATATTacaattcaaaccaaatgtctG
TTTTTAGGGGTTGAATTTTTAAGCCCCTCTCACCCCGATGTCAATTATGT
TTGTCTGCTTTAGAGAATGCATCTAACGTTTCTCGATATTCATACCTAGA
ATCACAAAATTTATATTTGCTGGAATAGTGACAACACTACCTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047101-exon-scaffold_121-1491911889:10531..12177 | TCONS_00047101-exon-scaffold_121-1491911889:10531..12177 | Clytia hemisphaerica | exon |
| TCONS_00047101-exon-scaffold_121-1510915933:10531..12177 | TCONS_00047101-exon-scaffold_121-1510915933:10531..12177 | Clytia hemisphaerica | exon |
| TCONS_00047101-exon-scaffold_121-1575043694:10531..12177 | TCONS_00047101-exon-scaffold_121-1575043694:10531..12177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:10531..12177 + |
Blast
BLAST of TCONS_00047101 vs. Swiss-Prot (Human)
Match: MED21 (Mediator of RNA polymerase II transcription subunit 21 OS=Homo sapiens GN=MED21 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.978e-24 Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 1
Query: 31 MADRLTQLQDQVNKLAECFCDSIGVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSQFFASMIARTVKDIDHLIDALPSEKSTTELQMKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLLSSRTSGKISDS 495
MADRLTQLQD VN LA+ FC++IGV+QQ P + Q + N Y+Q FA++IART KDID LID+LPSE+ST LQ SL +LE EN A L+ V G+ LLE+I+SA + IA + L +R SG S S
Sbjct: 1 MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEE--------------YAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTR-SGTHSQS 140
The following BLAST results are available for this feature:
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