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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047094 ID=TCONS_00047094|Name=TCONS_00047094|organism=Clytia hemisphaerica|type=transcript|length=3401bp
tttagaaacaacaagaaaaaaaatgtacaatAATGTGAAAAAcataataa
gaaattatgtcACTCCTGACATGATTGGAAAACCATATCTCCTGGCAGAA
ACTTCTTTACGTACAACTGATTGgggaaaagattttcaaattcttgACAA
TTATTATCATGATGACAGCTCACAAATTGATGTAAATGAAATTGCTAAGG
ATATCTATTTGGTTGAAAATGTATTGACTCAATTCCAATGTGCAACAATC
ATtgataaagcaaaaaaattgaatctaCAATATTGTTGTTATGGCGAAGA
AAGAAATAActctcgtttagttttgtttgatGAGAAATTTGCTGATTTTC
TTTGGGATAatatttctgagaaatttgaaacacAAATACAAGATTCTAAA
ATTCATCCATTTGGTTTCGATGCTGCTAGAGGCAATTGGGAGATATTTGG
TGTCAATGAAGCAATGCGTCTGAACAGATACAGTGGAAAAAGAAAGGAGT
TTTTTGCTCCCCACAGAGATGCTCCATTTTGTCCCAATGGTGACAAAAGA
TCCTTGTATACTATGCTCATTTATTTGAATGATGATTTTGAAGGAGGTCA
GACAAAATTTTACACACCAAAAGACCCCTCTATTGACACCAAAGGTTTAA
CAATCAAAGAGGAAATAGAAAAGCATGGAAGTTTGGAAGGCAGTTTCGAC
AGCTTCACTGTGTCTCCAAAAGCAGGAAGTGTTGttatcttcaaacagaa
tcttaTTCACGAGGGATGCAAACTTTCAGGAGATGGTAAATATAAGTTTG
TAATTAAAACTGATATTTTGGTTGAGCGTGTCAGCAAAAAACTTGGATTC
TGCCCTCCCAAGGAAGAATTTGATGACTATCAGAACTGTTTACAGTTATT
TCGTCAAGCCCAACAACATGAGATGAGGGGGCAGAACCAAGAAGCAAATG
AATGCTATGAGAAAAGCTTATCATTTCGTTATTATTATCCATCATCTTTA
TTGATTAGTAATTCCGATGAACTAAACAAAGCTAGCACTGATGATCCCAA
TACATTTGATTCCCAGATAAGTATGACGTCAACTTCCTCCATTCCTTCTC
GGTCCAACCCATTTACCATCTTTCCTCAAAATATTTGGAACAGAATAATG
GTTTTGGTACAAAATGATAAATCAATTCACAGTTTGTGTGAACTTTTCCC
CTTGTTGAATATTGAGAAGAGAAGGATTCTTTTTCAAAGAGTCGCACCAA
TGGTTGATCATCACAGTGGTATTTACACTAAGTTCTCGTATGATAATGGG
CATTTCGTAAATGGCTGCCTTGAAAACTGTATTAAAGTTTGTGCTGTTTA
TTCCATGTGCCTGCTTGGTAATACACCAAAAGATTCACACTATTTGGTGA
ATTATGACAGAGAAACAAGGAATGCAACAACTGTTCAGTTAAGAGATCTT
CTTTATGGTGTGTTTGCCAATGAACCTGTCCAAGGAACTATTTTCTCTGT
TGCTCGgagagaaaaagacaaaaaaccCAATACTGATTTGTACCATAGTG
TTGATAGGAAATTCATGTCAACACATTTTGATCGAGATGATATTGGTATT
GATATAGAATCTGAGATCAGATcaagtttgaagttttttgaTCTTGATAG
TGATGAAGAAGATAAAGATGAAGAAttaattgaaaatgaagaattaattg
aaaatgaagacgaGGAAAAGCAAGTAAACATAACGAATGTAAAGGATGTT
GATGTTAAGGTTGAAGAAATCGGTGTTTCCCAAGAAAACAATGAGTTTGA
CTCTGAATCTGATTCAATGAGTGATAATAGTAGCTCCACTGATTCTGAAA
GTGATGATGAACCTGAGCTCACAGAAAGAGATATTTGGAACTTTTGTCGT
GACAAACAATACTACTTGAAAGATTATTACAGTAGGTATTACCTTGGAAC
ATTTGATACTCATTATGAATATTGCAAAAATGAATTACCGTACCAAGAAA
AAGGAGATCCATATGATCTGAATGCTTGTAATTTTGATATTGTTAATGAA
CCTGAAGATCAATGGCACGAGTTCTTTAGTGGTTATGCGTCAATGGAGTC
TCCTGATTATTACCCTATTTACGTACCATCTTCCTATTCCGGCCCTGGTG
CAGCAATTATTCGCAAAACCAATGCACCAGTCATAATGGATGATAGAGAA
ATCTGTATTTGTAATTTCAAAGCAGTGGGTGGTTCATTAAGTAAAAATTG
TTCTACACACACCTTCAATCATGTTATTGCTGATTTCAGTAAGATAAAGC
TTGTAATCGAAAACGAAATTGCCTATGCTTATGGTACTCCTGACCAAAAA
AGCATGGCATCTCTTTTGAAATGGGTGAAACATTTTGCTGAGGATTTGTT
CGACTTTGAAATGTATAAAGTCAATATCAATGAAATGGAAGACGTATTAT
CATCATTCAATCATGCAGCATGCCAATGTTTATTTCCAAGATATCGCATC
GATGATTATGTCAATTTATCAAGCTATCCTATGTTGGATACTATTGTTGT
AATTGTGGCAAAGAACAAAATCGATCCAGGTGAAGTTCATATTTACACTG
GCTATGCTGGTATTGCAGCTCTTTGAGCACATTAATATACTATTATTAAG
CTATTGTTAAATTTGAATGATAGGCGCgtctttttttggaattgactcCA
TTAAGGGGTAGAAGTGTTTTTCTCTCGAAAAACTATGTAGAAGACTTTTA
AGCAAGTATGGCCAATTTCTGTACTGAACGAGAGTTATTTGATGTAGAAG
TGTCATTTTATAAGCGATTTATGACCAAAACGAGGGGGAAACCACCACTT
CTTCATCAAATAACTCCCGTTCAGTACAGAAATCGATCATACTtgcttaa
aagtcttctatatagtttttctaTATAGCTTTTCTAGAGAGCTTTCAGAT
TCTATAATTtgttttggcctaaaatgagtttgaaatttccatatAAATTG
GGCCCTTTGGCTTTAGCCTAGGTTTTCATAAATgagcccaaaaataaggg
cGACCCTTAGAATTTTTCTGGGCCGCCCTTCTGATATCAATCCATAGGGT
ATTAGGTCCAAATTTGTtgctttgttccaaatttgcacggtaattacacc
aatcaggccTACTATTTCCTTAGTTTGTGAAGCACCATACAGTACCATAG
TAGGAAGTGtgctgaaattttgaaaataattttaaaccacTTGAAAAGCT
TCACAaacaaaaatcatgaaaaagtagATGATGTCAGTCCTTGATAACAA
TTATTATTTAGCTTCTAAACAATTGTGGTTTTGATAAGTATTAATgttac
aatatttttttttcacgtaATGTTCTATATAGAGATTATTTTTATAGTCA
T Run BLAST on NCBI transcript from alignment at scaffold_121:488..3888+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047094 ID=TCONS_00047094|Name=TCONS_00047094|organism=Clytia hemisphaerica|type=transcript|length=3401bp|location=Sequence derived from alignment at scaffold_121:488..3888+ (Clytia hemisphaerica)
tttagaaacaacaagaaaaaaaatgtacaatAATGTGAAAAAcataataa
gaaattatgtcACTCCTGACATGATTGGAAAACCATATCTCCTGGCAGAA
ACTTCTTTACGTACAACTGATTGgggaaaagattttcaaattcttgACAA
TTATTATCATGATGACAGCTCACAAATTGATGTAAATGAAATTGCTAAGG
ATATCTATTTGGTTGAAAATGTATTGACTCAATTCCAATGTGCAACAATC
ATtgataaagcaaaaaaattgaatctaCAATATTGTTGTTATGGCGAAGA
AAGAAATAActctcgtttagttttgtttgatGAGAAATTTGCTGATTTTC
TTTGGGATAatatttctgagaaatttgaaacacAAATACAAGATTCTAAA
ATTCATCCATTTGGTTTCGATGCTGCTAGAGGCAATTGGGAGATATTTGG
TGTCAATGAAGCAATGCGTCTGAACAGATACAGTGGAAAAAGAAAGGAGT
TTTTTGCTCCCCACAGAGATGCTCCATTTTGTCCCAATGGTGACAAAAGA
TCCTTGTATACTATGCTCATTTATTTGAATGATGATTTTGAAGGAGGTCA
GACAAAATTTTACACACCAAAAGACCCCTCTATTGACACCAAAGGTTTAA
CAATCAAAGAGGAAATAGAAAAGCATGGAAGTTTGGAAGGCAGTTTCGAC
AGCTTCACTGTGTCTCCAAAAGCAGGAAGTGTTGttatcttcaaacagaa
tcttaTTCACGAGGGATGCAAACTTTCAGGAGATGGTAAATATAAGTTTG
TAATTAAAACTGATATTTTGGTTGAGCGTGTCAGCAAAAAACTTGGATTC
TGCCCTCCCAAGGAAGAATTTGATGACTATCAGAACTGTTTACAGTTATT
TCGTCAAGCCCAACAACATGAGATGAGGGGGCAGAACCAAGAAGCAAATG
AATGCTATGAGAAAAGCTTATCATTTCGTTATTATTATCCATCATCTTTA
TTGATTAGTAATTCCGATGAACTAAACAAAGCTAGCACTGATGATCCCAA
TACATTTGATTCCCAGATAAGTATGACGTCAACTTCCTCCATTCCTTCTC
GGTCCAACCCATTTACCATCTTTCCTCAAAATATTTGGAACAGAATAATG
GTTTTGGTACAAAATGATAAATCAATTCACAGTTTGTGTGAACTTTTCCC
CTTGTTGAATATTGAGAAGAGAAGGATTCTTTTTCAAAGAGTCGCACCAA
TGGTTGATCATCACAGTGGTATTTACACTAAGTTCTCGTATGATAATGGG
CATTTCGTAAATGGCTGCCTTGAAAACTGTATTAAAGTTTGTGCTGTTTA
TTCCATGTGCCTGCTTGGTAATACACCAAAAGATTCACACTATTTGGTGA
ATTATGACAGAGAAACAAGGAATGCAACAACTGTTCAGTTAAGAGATCTT
CTTTATGGTGTGTTTGCCAATGAACCTGTCCAAGGAACTATTTTCTCTGT
TGCTCGgagagaaaaagacaaaaaaccCAATACTGATTTGTACCATAGTG
TTGATAGGAAATTCATGTCAACACATTTTGATCGAGATGATATTGGTATT
GATATAGAATCTGAGATCAGATcaagtttgaagttttttgaTCTTGATAG
TGATGAAGAAGATAAAGATGAAGAAttaattgaaaatgaagaattaattg
aaaatgaagacgaGGAAAAGCAAGTAAACATAACGAATGTAAAGGATGTT
GATGTTAAGGTTGAAGAAATCGGTGTTTCCCAAGAAAACAATGAGTTTGA
CTCTGAATCTGATTCAATGAGTGATAATAGTAGCTCCACTGATTCTGAAA
GTGATGATGAACCTGAGCTCACAGAAAGAGATATTTGGAACTTTTGTCGT
GACAAACAATACTACTTGAAAGATTATTACAGTAGGTATTACCTTGGAAC
ATTTGATACTCATTATGAATATTGCAAAAATGAATTACCGTACCAAGAAA
AAGGAGATCCATATGATCTGAATGCTTGTAATTTTGATATTGTTAATGAA
CCTGAAGATCAATGGCACGAGTTCTTTAGTGGTTATGCGTCAATGGAGTC
TCCTGATTATTACCCTATTTACGTACCATCTTCCTATTCCGGCCCTGGTG
CAGCAATTATTCGCAAAACCAATGCACCAGTCATAATGGATGATAGAGAA
ATCTGTATTTGTAATTTCAAAGCAGTGGGTGGTTCATTAAGTAAAAATTG
TTCTACACACACCTTCAATCATGTTATTGCTGATTTCAGTAAGATAAAGC
TTGTAATCGAAAACGAAATTGCCTATGCTTATGGTACTCCTGACCAAAAA
AGCATGGCATCTCTTTTGAAATGGGTGAAACATTTTGCTGAGGATTTGTT
CGACTTTGAAATGTATAAAGTCAATATCAATGAAATGGAAGACGTATTAT
CATCATTCAATCATGCAGCATGCCAATGTTTATTTCCAAGATATCGCATC
GATGATTATGTCAATTTATCAAGCTATCCTATGTTGGATACTATTGTTGT
AATTGTGGCAAAGAACAAAATCGATCCAGGTGAAGTTCATATTTACACTG
GCTATGCTGGTATTGCAGCTCTTTGAGCACATTAATATACTATTATTAAG
CTATTGTTAAATTTGAATGATAGGCGCgtctttttttggaattgactcCA
TTAAGGGGTAGAAGTGTTTTTCTCTCGAAAAACTATGTAGAAGACTTTTA
AGCAAGTATGGCCAATTTCTGTACTGAACGAGAGTTATTTGATGTAGAAG
TGTCATTTTATAAGCGATTTATGACCAAAACGAGGGGGAAACCACCACTT
CTTCATCAAATAACTCCCGTTCAGTACAGAAATCGATCATACTtgcttaa
aagtcttctatatagtttttctaTATAGCTTTTCTAGAGAGCTTTCAGAT
TCTATAATTtgttttggcctaaaatgagtttgaaatttccatatAAATTG
GGCCCTTTGGCTTTAGCCTAGGTTTTCATAAATgagcccaaaaataaggg
cGACCCTTAGAATTTTTCTGGGCCGCCCTTCTGATATCAATCCATAGGGT
ATTAGGTCCAAATTTGTtgctttgttccaaatttgcacggtaattacacc
aatcaggccTACTATTTCCTTAGTTTGTGAAGCACCATACAGTACCATAG
TAGGAAGTGtgctgaaattttgaaaataattttaaaccacTTGAAAAGCT
TCACAaacaaaaatcatgaaaaagtagATGATGTCAGTCCTTGATAACAA
TTATTATTTAGCTTCTAAACAATTGTGGTTTTGATAAGTATTAATgttac
aatatttttttttcacgtaATGTTCTATATAGAGATTATTTTTATAGTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047094-exon-scaffold_121-1491911889:488..3888 | TCONS_00047094-exon-scaffold_121-1491911889:488..3888 | Clytia hemisphaerica | exon |
| TCONS_00047094-exon-scaffold_121-1510915933:488..3888 | TCONS_00047094-exon-scaffold_121-1510915933:488..3888 | Clytia hemisphaerica | exon |
| TCONS_00047094-exon-scaffold_121-1575043694:488..3888 | TCONS_00047094-exon-scaffold_121-1575043694:488..3888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:488..3888 + |
Blast
The following BLAST results are available for this feature:
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