TCONS_00047087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047087
Unique NameTCONS_00047087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047087 ID=TCONS_00047087|Name=TCONS_00047087|organism=Clytia hemisphaerica|type=transcript|length=707bp
tactaaaaagggggtggtggtacctaagacaatttttcttaaaaatcagg
ttagtaccctatgggttagtaccctgcggctGTACCCCCCCCTGTTTAAA
TTAATATTTTATTGTAGTTTTTATGTAGATATATATCTTAAATTACCAAT
GACCTAATTGTGATAATTTTCACACACCCTATTCATCGATTCATCATGCA
TAgcaatattttttcattgtctAAATTCTATAATACACCAGAATAcactt
tgttttcttttttcaaactatTCTTATAACATATTCGTATTTTCGGAGAA
AAATTTTATGCTAGACCCCTATTTATACTGTGTTCACTAATTTGTTCAAA
ATTCAGCCATTTGAGAGAGGATCTAGTTTGTTTTAAACAGCATTTTCGTT
CTTCTCATGAAATTAGAGTCTATTTTTAGTATAGTCATTATAGTCATTTT
TTGTACCTTTTTTAAACTGAATTTCTAAAGTATCTTTTCATCATTGCATT
CTTAAAAGCTTTCAATATAGACATCTCTacttattaatttttaattttat
gtaAATGTCAAGCttaatttttaccaaatttcgaatttcttatgttttaa
tttaaaatcgacctgtaatttttaaaatgaatttaaaaaagcaATTATAA
TTACGATAATTTTTGGAAGAAATTACGTTTCAGATGCTTTTAGCACCTTT
TCTTGCC
Run BLAST on NCBI

transcript from alignment at scaffold_120:125730..126436

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047087 ID=TCONS_00047087|Name=TCONS_00047087|organism=Clytia hemisphaerica|type=transcript|length=707bp|location=Sequence derived from alignment at scaffold_120:125730..126436 (Clytia hemisphaerica)
GGCAAGAAAAGGTGCTAAAAGCATCTGAAACGTAATTTCTTCCAAAAATT
ATCGTAATTATAATtgcttttttaaattcattttaaaaattacaggtcga
ttttaaattaaaacataagaaattcgaaatttggtaaaaattaaGCTTGA
CATTtacataaaattaaaaattaataagtAGAGATGTCTATATTGAAAGC
TTTTAAGAATGCAATGATGAAAAGATACTTTAGAAATTCAGTTTAAAAAA
GGTACAAAAAATGACTATAATGACTATACTAAAAATAGACTCTAATTTCA
TGAGAAGAACGAAAATGCTGTTTAAAACAAACTAGATCCTCTCTCAAATG
GCTGAATTTTGAACAAATTAGTGAACACAGTATAAATAGGGGTCTAGCAT
AAAATTTTTCTCCGAAAATACGAATATGTTATAAGAatagtttgaaaaaa
gaaaacaaagtgTATTCTGGTGTATTATAGAATTTagacaatgaaaaaat
attgcTATGCATGATGAATCGATGAATAGGGTGTGTGAAAATTATCACAA
TTAGGTCATTGGTAATTTAAGATATATATCTACATAAAAACTACAATAAA
ATATTAATTTAAACAGGGGGGGGTACagccgcagggtactaacccatagg
gtactaacctgatttttaagaaaaattgtcttaggtaccaccaccccctt
tttagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030021XLOC_030021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047087-exon-scaffold_120-1491911889:125730..126436TCONS_00047087-exon-scaffold_120-1491911889:125730..126436Clytia hemisphaericaexon
TCONS_00047087-exon-scaffold_120-1510915933:125730..126436TCONS_00047087-exon-scaffold_120-1510915933:125730..126436Clytia hemisphaericaexon
TCONS_00047087-exon-scaffold_120-1575043694:125730..126436TCONS_00047087-exon-scaffold_120-1575043694:125730..126436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:125730..126436 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.111174	0	0.329012	0.806771	0.640289	0.193342	1.6614	1.57609	1.22699	1.29834	1.06353	1.46039	1.85183	1.71363	0.923292	0.756062	1.28741	1.11265	0	0.112018	0.292276	0.155977	0.863811	0.0764714	0.220069	0	0.426761	0.0875522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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