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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047074 ID=TCONS_00047074|Name=TCONS_00047074|organism=Clytia hemisphaerica|type=transcript|length=1378bp
TAGAACATGCTTAAAGAACTTTGGAAGCTTGCTTTAACGGATGGTATTTT
CACATGAAATTAAGGTTTCGAACAGTATAACTTGAAGCAGGGAACGTTTC
TGAATGGTCGGTGGTCGTAAAGTATTTCATTGGAACACTATTAACAGGTA
AGCTACCAACTGCATTCACGCTTCGTCCGAAAAAGCGTGTTTCAAAGTGT
TCCTTATTCTATCTTTATTTGATCGATTATGTCTTTCTTTGCGTGCCACT
ACAAGTGCGTATACTGTTCTCGGGTTTGAAAACATATGTAAAAAAGCTTT
CCGGAATGTTTTACTAACGGTtacgaaaaggaaaaatttagtTGAAGAGT
ATATAATAACGCCAAGTTTAGCAAAGGCGAATACTGAGTCCACGCGTTCC
CATTGGTCAGATGTTTGATGCGTTCTTAAAAAGAAACACTGCACCAAACA
TTGACAAAAGATGATAGTTATAAAATAAATCGACATGGCGCGTAATAATT
GGCCCATTTCGACAgctttttgttttgactttggAATGTAGTCTGGGACG
GTAGATTGGTATATATTCATCGAAATGTTGACTAGAAGTATTACAAACCA
TGGTACTACAGTTAAGAAAACACACTGGAATCCGAAAATATAATTCTTGA
AAGATTCTGTGAGAGAAAGAGCGGTAAGCCATCGGCACGGTATACCATTC
GCCGTGTATGAGGCGCCGTATGCGAAGAAATTCGGTATATTAACGGCAAA
CATGACGGTTATGATGAGCGATATTGCGATATTGGTGATTCTAGTTTCGG
ATTGTCGAAGTTTGATCGGATACAAGACCATAGTTAAGCGACAAGCATCA
ACGCCAGCTATTAACCAGAAATTGAGAAACATGAAGAAAGTGTATGACGG
GTAGCCAATGATGGCGTAGTACTGGTTATAAGTGTGATTCTGAAGGATGT
TTGGGTTAGCATACACGAGGATGTCACATGTTAGAAATCCGAGTAGTGTC
CCGATATCTATGATAGCAATGGTGTTTAGATAGATTCCGCATGTGATATT
TCTATTCCGTGCACGGTTCATTAACCGCTTCCACAACGTGGTACATACAA
TGTCGGTGATGATACCAATGATGAATAAAGGAATACCAATGAAAATGCTT
GAGATGCGGTGTAGGTTGTATGAAGGCCGGTGATGTGTATCATCTGTCCA
TTGTATTGGTGTGAAACATTGCCCTGTGTATCTTGCATGTGCAGAATGAC
TGTTTTGGAAAAGAAAATGTAGAACATTGTAGAATGGAATTTGTTCTGGG
TAGGGATCAGATTTTGGCCTGGTGTGTGGCACAAGACACGAAACTACTGT
TGACACAATCTAGTTCAATTTTCAAGGA Run BLAST on NCBI transcript from alignment at scaffold_120:409253..411410- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047074 ID=TCONS_00047074|Name=TCONS_00047074|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at scaffold_120:409253..411410- (Clytia hemisphaerica)
TAGAACATGCTTAAAGAACTTTGGAAGCTTGCTTTAACGGATGGTATTTT
CACATGAAATTAAGGTATGAACTAAGTTATGTTACAATTTAATGTATATT
TTTATAGATCCAATCCAAGAGCATCTAATCTTAAGCTTAATCAAAAGTGA
CTACTAATTCAAACTTACAAAAAGATTTCCCTAGTTGACAGGGGGGTCGG
TACTAAAATCTCAGACATCAAAAAATCCTCTTAGTATCATAGGGTACTAA
AATACCAAAAAAGTGATATCCAGACAGAAAAAAATTTTCAGAATTTTTTG
TCATTTTTAAGAACTTTTTAGAATTTCTCATTTTTTTGCATTTTAAGAAT
ACTTCCCAAGTTCAATTATTTTGCATTCAGTCAAATGTCTTTAATGATTG
TTTGATGTTCGATCTTATAAAGCAGCATTGCTTAAAAGTATCAAGTTTTT
GCAAAAAGCAGCACTTTAATTTGAGGAAAAGGATCCTGGGAATACCAAAA
TTGGGTGGTCTCTGTGTCTCTGTATAGGTACTAAAATATACCACTTCCGA
AAAATTTTCCATAGCCCTTTTAGTACTCATCTAAGTGAGAGATTTTAGTA
CCGGCGACCTCCTCTCCCTACAGTTGGTTGTGTTTTATTTTTGAGTCTGA
GATTTGAAACGTCACAGAAGTTCTAACGAGGGAGTAAGAATTATTATATA
TATATAAGCAGTCTACAAGCGAGATAATTAGAAAATAACCGCCTCTCTTG
TTCTGAAAAATGATAAAGAGCAAAATCTGAGATTACGGAAGGGTAAACGT
TTCTCTTTTTAAGAATGGAGCTCAATTCTAATGTTTTCTTGCAGGTTTCG
AACAGTATAACTTGAAGCAGGGAACGTTTCTGAATGGTCGGTGGTCGTAA
AGTATTTCATTGGAACACTATTAACAGGTAAGCTACCAACTGCATTCACG
CTTCGTCCGAAAAAGCGTGTTTCAAAGTGTTCCTTATTCTATCTTTATTT
GATCGATTATGTCTTTCTTTGCGTGCCACTACAAGTGCGTATACTGTTCT
CGGGTTTGAAAACATATGTAAAAAAGCTTTCCGGAATGTTTTACTAACGG
TTACGAAAAGGAAAAATTTAGTTGAAGAGTATATAATAACGCCAAGTTTA
GCAAAGGCGAATACTGAGTCCACGCGTTCCCATTGGTCAGATGTTTGATG
CGTTCTTAAAAAGAAACACTGCACCAAACATTGACAAAAGATGATAGTTA
TAAAATAAATCGACATGGCGCGTAATAATTGGCCCATTTCGACAGCTTTT
TGTTTTGACTTTGGAATGTAGTCTGGGACGGTAGATTGGTATATATTCAT
CGAAATGTTGACTAGAAGTATTACAAACCATGGTACTACAGTTAAGAAAA
CACACTGGAATCCGAAAATATAATTCTTGAAAGATTCTGTGAGAGAAAGA
GCGGTAAGCCATCGGCACGGTATACCATTCGCCGTGTATGAGGCGCCGTA
TGCGAAGAAATTCGGTATATTAACGGCAAACATGACGGTTATGATGAGCG
ATATTGCGATATTGGTGATTCTAGTTTCGGATTGTCGAAGTTTGATCGGA
TACAAGACCATAGTTAAGCGACAAGCATCAACGCCAGCTATTAACCAGAA
ATTGAGAAACATGAAGAAAGTGTATGACGGGTAGCCAATGATGGCGTAGT
ACTGGTTATAAGTGTGATTCTGAAGGATGTTTGGGTTAGCATACACGAGG
ATGTCACATGTTAGAAATCCGAGTAGTGTCCCGATATCTATGATAGCAAT
GGTGTTTAGATAGATTCCGCATGTGATATTTCTATTCCGTGCACGGTTCA
TTAACCGCTTCCACAACGTGGTACATACAATGTCGGTGATGATACCAATG
ATGAATAAAGGAATACCAATGAAAATGCTTGAGATGCGGTGTAGGTTGTA
TGAAGGCCGGTGATGTGTATCATCTGTCCATTGTATTGGTGTGAAACATT
GCCCTGTGTATCTTGCATGTGCAGAATGACTGTTTTGGAAAAGAAAATGT
AGAACATTGTAGAATGGAATTTGTTCTGGGTAGGGATCAGATTTTGGCCT
GGTGTGTGGCACAAGACACGAAACTACTGTTGACACAATCTAGTTCAATT
TTCAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047074-exon-scaffold_120-1575043694:411347..411410 | TCONS_00047074-exon-scaffold_120-1575043694:411347..411410 | Clytia hemisphaerica | exon |
| TCONS_00047074-exon-scaffold_120-1575043694:409253..410566 | TCONS_00047074-exon-scaffold_120-1575043694:409253..410566 | Clytia hemisphaerica | exon |
| TCONS_00047074-exon-scaffold_120-1510915933:411347..411410 | TCONS_00047074-exon-scaffold_120-1510915933:411347..411410 | Clytia hemisphaerica | exon |
| TCONS_00047074-exon-scaffold_120-1510915933:409253..410566 | TCONS_00047074-exon-scaffold_120-1510915933:409253..410566 | Clytia hemisphaerica | exon |
| TCONS_00047074-exon-scaffold_120-1491911889:411347..411410 | TCONS_00047074-exon-scaffold_120-1491911889:411347..411410 | Clytia hemisphaerica | exon |
| TCONS_00047074-exon-scaffold_120-1491911889:409253..410566 | TCONS_00047074-exon-scaffold_120-1491911889:409253..410566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:409253..411410 - |
Blast
The following BLAST results are available for this feature:
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