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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047065 ID=TCONS_00047065|Name=TCONS_00047065|organism=Clytia hemisphaerica|type=transcript|length=2365bp
ttaaattGAATTTGGTATAGCTCTGCATAGCCTCTTCATGATAGATAACT
AGACATATTTAAATGTATTATCGAGCTGAAATTCAGGTTGAATTGTTTGT
TTGAAAGAGTACTTCAGatgGGTACAGAATGGAAACTAGATAGTCAATTA
CGTGCCAGTTTGGAGCGCATCGAAAAAATCGTCTTCAAGCTACAAGACAG
TGAAAATGGAGTTCCCATCACCAACGCTAAAGCTTTGTTTCACACCATAC
CTAACGTCTGTACTGGCGCTGATATCGTCACTTGGCTTAAGAATGACCTT
GAGTTGAAAACACGTGCCGAGGCTTTGAATGTCGCTCGTACTATTGCCAA
ATATGGTTACATCTTTGTAGCCAGTGACAGTAAACTTACCGTCAAAGATG
ATTTAACACACCACCGATTTCAACACGAGTTTTTCTGGCCAACTAAAGAA
AGAGCTATATCGAATTCTGATTATGCTGTCCATCTATGTAAACGTCTGTT
TTCCAATAAAAATCGATCAAACCTTGAAGTTTACGAGATGGATCAATTCA
CACGCTTGCAACGTCATTTAGGTCATAAATGGGAACACATTTGGGTACAA
GCTGAAGCAAGTTATAAAGTTGATAAGAAAAAGTCTAAAGCCGAGCAATA
CGTCATTGAAAGCCAAGAAAGAGCTTTTTGGAATTTACACAAACCGCCAC
CCTATTCTGATTATGTTTTAGCTGCTGATCCtttgaagtttaaaaagaaT
GCAACAACCGAGGCTATTACTCCGCTTTCTCCCGATCGCGCCGCCTCAAC
GCCTTCCATTTTGAGGCGCCATTCAGTTGATTCTTTAAGAGATGACGCCA
TGAAGCTTGGAACCGCCCTTCAAAAAGCAGAAGCACCAAAAGCTGTTGAA
AGTTTGATATCTTATTGTATGCAGTACAATAAATTCGACCCTTTACTCCG
ACAACCGAGTACTACCTCGAGTAACTCGGCTTTTTACACGGAAGAGTCGA
ACAACTCGAATGATGCTTCCAGACGTGGATCACAACAGGTGGAACGCTGG
GCGATATCATTGGAGGAGCTATTACGTGATAAGGAAGGGGTACTCgtctt
tttaaaacatttagaaaaagaaCACAGCTCTGAGAATTTACGTTTTTGGT
TAGCTTGTGAAGAATACAAGGCGTGCCCTTTAAAGAAAGTTCCTGAAAAA
GCTgaacaaatttataaagaatATCTATCTCGTTCTGCATTTTATCAAGT
GAATTTAGACAGTAAACTTATGGTTGATGTCGAAGAGGGTATGAAAAACC
CGAACCATTTTACCTTTCGGGCTGCCCAACATGAAATCTTTCGTCTCATG
CGATCAGACAGCTATCCGCGTTTCTTGAAATCCGAAAATTTTGTCATGTT
ATCGAAAGAAGCGAATTCACCGAGTCATAAAGGACAAGAGAAGAAAGGAA
TTTTATCCATTTTGACGAGTCCTCAACATAAAGTATAGATGTGGGttatt
tgtgtgttttttttttgtcaaactcGTTCATTTTTGTTTGTCTATCTTCG
TATGGAAATCTGCTGGTGATTTTTTATATAGTGTATGACGTATTTTGTGT
TAGATTATTTTTTAGAGATAATATACTTGCTATGATTTTTATTACAATCG
GTTGTATCTACCATTTAATTGATTTCTCTTTCAAATTATACCTCAACCTA
TTTGACAGCTTTTTATAACTGGCCATGGTCGCGAGTTTTCCGATATACCT
GTTTTGAACCATAATTCGTTTTGTGCAGTTCCGTTTTAGGAAAAATAAGT
CTTTGTTTAGCATAATTTTCCATCCCCCCTTATTCCTCCTTCAAGCCTTG
GTTCCTTTCCCCGGCCAGCTAAGTgaatactttttgacttttcgacGATC
GTGTAATTGAGGATAAAATCAAACCTCATGTTGTATAGATTAGCTTTATC
TAGTACATTTATTGCTGACAAAATTTTTATCGCGTtcattttttgtacat
aattatTTGTAGCTCTTAGACAATACTTTCCTTTCTTCGCTGCAAAGATT
CATGAAGCGTCCCTTTCAACCAATAACGAAAATTGGTTATTTGGGAAAAC
GAACACtttggtttaactcactaaagaATTTTGTTTACTGAGCACACAAG
ATTAATCTTTCGTAAGTTAAACCATGATGCTCTGTTTTTACCCAATtctg
acgtcatgccgtggcaaaaaatctttgaaacaaGTAGCAGAATTTTTTGA
CATCTTTTCTGTcgataaatttttaaaactcgTTGTCCTTTGAACAGATT
AAACTTCAAGGTCTTTTAAATCACGTCTTTTTCTTAGctaagaaaataat
tttacctCAAGTAac Run BLAST on NCBI transcript from alignment at scaffold_120:362337..367007- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047065 ID=TCONS_00047065|Name=TCONS_00047065|organism=Clytia hemisphaerica|type=transcript|length=4671bp|location=Sequence derived from alignment at scaffold_120:362337..367007- (Clytia hemisphaerica)
TTAAATTGAATTTGGTATAGCTCTGCATAGCCTCTTCATGATAGATAACT
AGACATATTTAAATGTATTATCGAGCTGAAATTCAGGTTGAATTGTTTGT
TTGAAAGAGTACTTCAGGTACTATATTTCTTGTTCAATTTTCTTTGTTTG
TAGTGTCACTTATTAATAAATTGGTAATTTGAAATGCCTTAAACGCTTCT
TTAAATACACATTACTACTTTAAAGCTGTTTTACATTCAACCATATTTAC
ATTCAACCATTATTACATAAAACCATATTTAGGAATAATCTTTAGGACAG
CAACAAGGAAGTCCTTTTTCTTTTAACATCTGTATTGGAAGCTGTTTAGC
TGTTCAAATAGAAAATAACGTACTGGACAATTTTGACACTAGCTGTATAT
ACAATCAATTTTTTTTCCTGGATTGAATGATATTATCTTATCAAACTAAT
ACTTTTTCAACAGTTTAAAAACGTTTTAGGAGAAAAGGTTTTCTAAATTT
CATTCTTTATTCCCTTTGAGTTTAAAAAACGCTTTGGAAGTGGAGGTTTT
CTAAATTATTTTCTCGATTTACTTTAGGGGTTAGTTTATTTTATAGCTAG
GATAAGGGAAGTATATTGAGGAAGTTCTGAACTTGGGATTCATTGTTCCG
AGAATCAGTTGAAAGTTTTTGATATCTTATATTGCAAAATGTATTGTTTT
GGGGTAAAATTCGAAAAAGAGGAACTTTAAAGGCTACTATATATTATATA
CAAAGATTTATAGATTTATGAAAGATGAGAATTATCAATGAAATATATAT
AATTCTTTGTTCAAATTAATTATCAAATCCATGCTTGTTTATTAAAGCTT
TTTGAAGATCACTGTTAATTAATTTTCGTGAGTTTTGCTAAAAGAGCAAT
ATTTTTTTTCGTGATTTGCTTTTTTGTTGTTGGCTCTAAAAGAAGTAAAA
TTTTTTGGTCAGTATATAAATAAGGCTAGGTTGGTTAGAGTCTAGGCTTA
AATCTTTGAAAACTAACTTCTTTTTAATGATATTATCTAGTCTTGTTTTA
AAGAAAGACCAAGCTAGAACGATAAACTCGGTATGCATTCACTCACCCTC
TGGATAAGGCTATCACTGTGTCTCACTAACATTCTGCCGATTGGTAGTGT
GAAGGTCACAGACTTGCACCGCGATGGACTGTGTTCGAATCTCAAGCACT
TTCAGGCAGGATGTTGTTAGGGAAACATGGTGATGTCTCTACTTTCACTT
TAAGACCAAGCTTCTTTGCTCGAAGTTTTGGGTAGGGCTTAAACAGACCA
TATTCTAACCAGACATCCTCCTTTATATGACCTTTTACGATAAATAAAAC
CTTTTTTTTCGGATTTGCGATAATACTAACTGATACAAGTGAAAAAAAAA
AATTAAAAGCAAAGTTGCAACAAGAACCTTTCAAAATGAAATTTATACCA
AAGATAGATTTATTATCCAAAGCTTCATTTCGAAATTTTCAAGGTTGAGG
TCAGTGAGGTTTTTCAAGAGAAAATACCCTTTTTTGGCTAAAGAGAATCT
TTCACAATGTTTCACAATAGAGATGCTGTAAATCTCATCTTTATAATCTT
CGCACGTTTTCGAAAATATATATTATTCGGTTTTAAATGTACTTTAAAAA
TTTGAAATTACAAATAACATCAAGATATGGGGAGTAATGGATATGGGATA
GGTTAGCAGGAGGATTTCATTTATTGAGTTTCGCTTCTTTTTAACACCTC
CGATATTTTTGTTGTATCATTTCGTATTTTTCACAATGACTTATTCTGAA
TTGACGTAAAAGAAACCTTGTTGATTTTAGCAGATATGGAAAAGAGACGA
AAATAAAAGTTAAGGTCAAAAGTTGTAGTATAGTGTAGTGTAGGTAAATT
ATTCTTCATGCGCATACAGTGGTAAAGTCGATAGTTTGAATGATAATTGG
TAGTAGGTCTCAATAAGAGGAGAATTATGGTGCCGTTTTCTGGGTCTGAG
GCCCCGAGTTATTGCATTGATGTCACTATTTCTTGGGTAGAGCCCTCAAA
ATTTTGATATAAATTGACATCCTAGTCTCTTACAGTAACAACATCAATCA
ATTAATTGACTTTGCCTTTAACCTTACACACTTTAGTTTGTTTGTAATCT
AATTTGTAATCTTGTAAAAAACAAATAGCTACTAGGCTAATACAAGTCAA
CCTATTTACAACATTGTATGGAGATCTTAAATCTTAAATGCAGTTGTAGA
AGGTTATAGGGTTCCTTACTATGCAACTCAAAAAATACTGATGTTCATCT
TGTCTAATTTTTAGATATTCTATTCAAAGAAACGATAAAAAGTTCGACTT
TTCCCAATGAAACCCGTGTTCGTTTTGGTCATAAAAGAAACTAATGAATA
TAGTTTTGTTTTTATATTTTTAGATGGGTACAGAATGGAAACTAGATAGT
CAATTACGTGCCAGTTTGGAGCGCATCGAAAAAATCGTCTTCAAGCTACA
AGACAGTGAAAATGGAGTTCCCATCACCAACGCTAAAGCTTTGTTTCACA
CCATACCTAACGTCTGTACTGGCGCTGATATCGTCACTTGGCTTAAGAAT
GACCTTGAGTTGAAAACACGTGCCGAGGCTTTGAATGTCGCTCGTACTAT
TGCCAAATATGGTTACATCTTTGTAGCCAGTGACAGTAAACTTACCGTCA
AAGATGATTTAACACACCACCGATTTCAACACGAGTTTTTCTGGCCAACT
AAAGAAAGAGCTATATCGAATTCTGATTATGCTGTCCATCTATGTAAACG
TCTGTTTTCCAATAAAAATCGATCAAACCTTGAAGTTTACGAGATGGATC
AATTCACACGCTTGCAACGTCATTTAGGTCATAAATGGGAACACATTTGG
GTACAAGCTGAAGCAAGTTATAAAGTTGATAAGAAAAAGTCTAAAGCCGA
GCAATACGTCATTGAAAGCCAAGAAAGAGCTTTTTGGAATTTACACAAAC
CGCCACCCTATTCTGATTATGTTTTAGCTGCTGATCCTTTGAAGTTTAAA
AAGAATGCAACAACCGAGGCTATTACTCCGCTTTCTCCCGATCGCGCCGC
CTCAACGCCTTCCATTTTGAGGCGCCATTCAGTTGATTCTTTAAGAGATG
ACGCCATGAAGCTTGGAACCGCCCTTCAAAAAGCAGAAGCACCAAAAGCT
GTTGAAAGTTTGATATCTTATTGTATGCAGTACAATAAATTCGACCCTTT
ACTCCGACAACCGAGTACTACCTCGAGTAACTCGGCTTTTTACACGGAAG
AGTCGAACAACTCGAATGATGCTTCCAGACGTGGATCACAACAGGTGGAA
CGCTGGGCGATATCATTGGAGGAGCTATTACGTGATAAGGAAGGGGTACT
CGTCTTTTTAAAACATTTAGAAAAAGAACACAGCTCTGAGAATTTACGTT
TTTGGTTAGCTTGTGAAGAATACAAGGCGTGCCCTTTAAAGAAAGTTCCT
GAAAAAGCTGAACAAATTTATAAAGAATATCTATCTCGTTCTGCATTTTA
TCAAGTGAATTTAGACAGTAAACTTATGGTTGATGTCGAAGAGGGTATGA
AAAACCCGAACCATTTTACCTTTCGGGCTGCCCAACATGAAATCTTTCGT
CTCATGCGATCAGACAGCTATCCGCGTTTCTTGAAATCCGAAAATTTTGT
CATGTTATCGAAAGAAGCGAATTCACCGAGTCATAAAGGACAAGAGAAGA
AAGGAATTTTATCCATTTTGACGAGTCCTCAACATAAAGTATAGATGTGG
GTTATTTGTGTGTTTTTTTTTTGTCAAACTCGTTCATTTTTGTTTGTCTA
TCTTCGTATGGAAATCTGCTGGTGATTTTTTATATAGTGTATGACGTATT
TTGTGTTAGATTATTTTTTAGAGATAATATACTTGCTATGATTTTTATTA
CAATCGGTTGTATCTACCATTTAATTGATTTCTCTTTCAAATTATACCTC
AACCTATTTGACAGCTTTTTATAACTGGCCATGGTCGCGAGTTTTCCGAT
ATACCTGTTTTGAACCATAATTCGTTTTGTGCAGTTCCGTTTTAGGAAAA
ATAAGTCTTTGTTTAGCATAATTTTCCATCCCCCCTTATTCCTCCTTCAA
GCCTTGGTTCCTTTCCCCGGCCAGCTAAGTGAATACTTTTTGACTTTTCG
ACGATCGTGTAATTGAGGATAAAATCAAACCTCATGTTGTATAGATTAGC
TTTATCTAGTACATTTATTGCTGACAAAATTTTTATCGCGTTCATTTTTT
GTACATAATTATTTGTAGCTCTTAGACAATACTTTCCTTTCTTCGCTGCA
AAGATTCATGAAGCGTCCCTTTCAACCAATAACGAAAATTGGTTATTTGG
GAAAACGAACACTTTGGTTTAACTCACTAAAGAATTTTGTTTACTGAGCA
CACAAGATTAATCTTTCGTAAGTTAAACCATGATGCTCTGTTTTTACCCA
ATTCTGACGTCATGCCGTGGCAAAAAATCTTTGAAACAAGTAGCAGAATT
TTTTGACATCTTTTCTGTCGATAAATTTTTAAAACTCGTTGTCCTTTGAA
CAGATTAAACTTCAAGGTCTTTTAAATCACGTCTTTTTCTTAGCTAAGAA
AATAATTTTACCTCAAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047065-exon-scaffold_120-1575043694:366891..367007 | TCONS_00047065-exon-scaffold_120-1575043694:366891..367007 | Clytia hemisphaerica | exon |
| TCONS_00047065-exon-scaffold_120-1575043694:362337..364584 | TCONS_00047065-exon-scaffold_120-1575043694:362337..364584 | Clytia hemisphaerica | exon |
| TCONS_00047065-exon-scaffold_120-1510915933:366891..367007 | TCONS_00047065-exon-scaffold_120-1510915933:366891..367007 | Clytia hemisphaerica | exon |
| TCONS_00047065-exon-scaffold_120-1510915933:362337..364584 | TCONS_00047065-exon-scaffold_120-1510915933:362337..364584 | Clytia hemisphaerica | exon |
| TCONS_00047065-exon-scaffold_120-1491911889:366891..367007 | TCONS_00047065-exon-scaffold_120-1491911889:366891..367007 | Clytia hemisphaerica | exon |
| TCONS_00047065-exon-scaffold_120-1491911889:362337..364584 | TCONS_00047065-exon-scaffold_120-1491911889:362337..364584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:362337..367007 - |
Blast
BLAST of TCONS_00047065 vs. Swiss-Prot (Human)
Match: RGS6 (Regulator of G-protein signaling 6 OS=Homo sapiens GN=RGS6 PE=1 SV=5) HSP 1 Score: 298.516 bits (763), Expect = 1.858e-91 Identity = 177/451 (39.25%), Postives = 258/451 (57.21%), Query Frame = 1
Query: 166 RIEKIVFKLQDSE-NGVPITNAKALFHTIPNVCTGADIVTWLKNDLELKTRAEALNVARTIAKYGYIFVASDSKLTVKDDLTHHRFQHEFFWPTKERAISNSDYAVHLCKRLFSNKNRSNLEVYEMDQFTRLQRHLGHKWEHIWVQAEASYKVDKKKSKAEQYVIESQERAFWNLHKPPPYSDYVLAAD---------PLKFKKN--ATTEAITPLSPDRAASTPSILRRHSVDSLRDDAMKLGTALQK--AEAPKAVESLISYCMQYNKFDPLLR--QPST--TSSNSAFYTEESNNSNDASRRGSQQ-VERWAISLEELLRDKEGVLVFLKHLEKEHSSENLRFWLACEEYKACPLKKVPEKAEQIYKEYLSRSAFYQVNLDSKLMVDVEEGMKNPNHFTFRAAQHEIFRLMRSDSYPRFLKSENF--VMLSKEANSPSHKGQEKKGIL 1455
+IE I+ K+QD + GVPI K+ IP+V TG DIV WL +L ++ EA+++ IA GYIF SD LT+KDD T +RFQ +FWP+ N+DYA++LCKR NK R L YE + RLQR KWE I++QAEA K+D+KK K E+ +++SQERAFW++H+P P D P K KK+ TE SP S P +R+ + + +R L + + + K ESLI+Y QY ++DPL+ +PS S + A + E S+ SQQ V+RW S +E+L+D+ G FL+ LE E SSENLRFWLA ++ K PL+ V ++ E+I++E+L+ A +NLDS + +K+ +TF AQ I++LM+SDSY RFL+S + ++L+K+ S G+ G++
Sbjct: 28 KIEDIITKMQDDKTGGVPIRTVKSFLSKIPSVVTGTDIVQWLMKNLSIEDPVEAIHLGSLIAAQGYIFPISDHVLTMKDDGTFYRFQAPYFWPSNCWEPENTDYAIYLCKRTMQNKARLELADYEAENLARLQRAFARKWEFIFMQAEAQVKIDRKKDKTERKILDSQERAFWDVHRPVPGCVNTTEMDIRKCRRLKNPQKVKKSVYGVTEESQAQSPVHVLSQP--IRKTTKEDIRKQITFLNAQIDRHCLKMSKVAESLIAYTEQYVEYDPLITPAEPSNPWISDDVALWDIE------MSKEPSQQRVKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPGAPSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKKKGK-SLAGKRLTGLM 469
The following BLAST results are available for this feature:
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