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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047034 ID=TCONS_00047034|Name=TCONS_00047034|organism=Clytia hemisphaerica|type=transcript|length=1585bp
CTTAGATGGCTAAATAGACATTTGATTTGAAAGAGGGGAGATTCTCatta
tctgaaaaatagaatatcaattttttgattgatgCTTCTAATTGCTCTGA
TTTCCCCAAAAGATTAACTGTAAATTAATTTATCATTGATACTTACAATT
TCAATCAAACCAAAAATCTAATATGTATTTTTCAACTAGTCGTCTATGTT
TAGTATAGTGATGtgaacaacatttttttgatGAACAAAAAAGTGTTCAA
AGAATGGTGAAGAAAGAtagattttataatttttggtACACTGcgaaaat
tctttgaaacatttttaaccgAGCTTTATGATGGAAACGAGACTCGAAAA
TTTATGATGTTTTTGATAAGACGTTTATAAGTTTGATTCGTATGTTGAAT
GAACTCGATGTCGTATTGATATTTCCAATCCTTACTTGAAAGCGATTTGG
AAAAGACTAAAGAAAAAAGGCTGTAAAACTGAATTTTATTAACAGTAGAC
TGTAATTTGAAATAATGGTGAATTGGCGTGACGAGTTTGAAAGTAAGCGG
CGTTTCGAGGCCGCCAGACGTCTTATTTACTCGCACCCATCAGTGGCCGG
TCGGTGCCGAACCCTTCAAAGGCAGCTCGGTGGAAAGAAGGCAAGATCAA
ATGAAGCAAGAGCTCAAGAAACGAATCTCCCttcaataaacaaaacaaac
ataGATGAGATGGCAGTAACACCACCTTTGATTTGTAAATCCTATTCAGC
TCCTTCTCTCATGAGAGGCTTACATAAAACACAAAAACCAGATCTTGAAA
TGTTGGATTTAATTGCGTTGGGAAATTTTGGCCACGAACGGACTCAATCA
TCATCAGCTGTTCGTAAATTTGTTGTTTCGCCTTCGATGTTGACCGCGCG
TAATATTTTCCCTAGTATCGATAACGTACCAAAGCCGCCGAAAATCGATA
ACTTTTTATCATCTCGTGACCAAAATTCAACGAACAACGAAAACGCATCG
ACTATTTTTGAAGGGTGGGGTCAGAGAAAAAGGCATATACTGAAAGAGAA
ATACCGCCCATCTCCGCCTCAAGACGTAGAGCTCCATATTAAAGCTATTG
ATCCAGTCTTAAAACATATGACTCTGTTATCTTTAAATAAAGATAACGAA
ATAACTTCACCTCCATTGAATGAACAGGGACAAGTTTGGAAACAAAACGA
GTCAGTGGTTTCAAAGCATGTCCAAAAGACACACCCGATCGAAGAGGATA
AAACTAAAAAACCATTAGGGGCATTGAAAGTGAAATTTCCAGTACCAAAT
TCTTGATGTTgaacttttatttatatatgTTTGCTATGATTCATTTCTAA
TACTTTTTATTTATACTTTAATTTAGTTTGGCATTTTTAGTCCTTATCTA
ATTATTGATTTTGGTGTAAAAAAATGGAGTTGAGTCAAAACTTATTTACT
ACTACCATGAATTCTaagttttcactttttattaataatttttcattttt
acaatAAAACTATAGAATATCATCCTTGtcagcttttttgaaaatttgtc
catagtttaaaaaaagtttttttgatacAGCACAT Run BLAST on NCBI protein sequence of TCONS_00047034-protein >TCONS_00047034-protein ID=TCONS_00047034-protein|Name=TCONS_00047034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MVNWRDEFESKRRFEAARRLIYSHPSVAGRCRTLQRQLGGKKARSNEARA
QETNLPSINKTNIDEMAVTPPLICKSYSAPSLMRGLHKTQKPDLEMLDLI
ALGNFGHERTQSSSAVRKFVVSPSMLTARNIFPSIDNVPKPPKIDNFLSS
RDQNSTNNENASTIFEGWGQRKRHILKEKYRPSPPQDVELHIKAIDPVLK
HMTLLSLNKDNEITSPPLNEQGQVWKQNESVVSKHVQKTHPIEEDKTKKP
LGALKVKFPVPNS Run BLAST on NCBI transcript from alignment at scaffold_120:249360..251007- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047034 ID=TCONS_00047034|Name=TCONS_00047034|organism=Clytia hemisphaerica|type=transcript|length=1648bp|location=Sequence derived from alignment at scaffold_120:249360..251007- (Clytia hemisphaerica)
CTTAGATGGCTAAATAGACATTTGATTTGAAAGAGGGGAGATTCTCATTA
TCTGAAAAATAGAATATCAATTTTTTGATTGATGCTTCTAATTGCTCTGA
TTTCCCCAAAAGATTAACTGTAAATTAATTTATCATTGATACTTACAATT
TCAATCAAACCAAAAATCTAATATGTATTTTTCAACTAGTCGTCTATGTT
TAGTATAGTGATGTGAACAACATTTTTTTGATGAACAAAAAAGTGTTCAA
AGAATGGTGAAGAAAGATAGATTTTATAATTTTTGGTACACTGCGAAAAT
TCTTTGAAACATTTTTAACCGAGCTTTATGATGGAAACGAGACTCGAAAA
TTTATGATGTTTTTGATAAGACGTTTATAAGTTTGATTCGTATGTTGAAT
GAACTCGATGTCGTATTGATATTTCCAATCCTTACTTGAAAGCGATTTGG
AAAAGACTAAAGAAAAAAGGCTGTAAAACTGAATTTTATTAACAGTAGAC
TGTAATTTGAAATAATGGTGAATTGGCGTGACGAGTTTGAAAGTAAGCGG
CGTTTCGAGGCCGCCAGACGTCTTATTTACTCGCACCCGTCAGTGGCCGG
TCGGTGCCGAACCCTTCAANAGGCCGCCAGACGTCTTATTTACTCGCACC
CATCAGTGGCCGGTCGGTGCCGAACCCTTCAAAGGCAGCTCGGTGGAAAG
AAGGCAAGATCAAATGAAGCAAGAGCTCAAGAAACGAATCTCCCTTCAAT
AAACAAAACAAACATAGATGAGATGGCAGTAACACCACCTTTGATTTGTA
AATCCTATTCAGCTCCTTCTCTCATGAGAGGCTTACATAAAACACAAAAA
CCAGATCTTGAAATGTTGGATTTAATTGCGTTGGGAAATTTTGGCCACGA
ACGGACTCAATCATCATCAGCTGTTCGTAAATTTGTTGTTTCGCCTTCGA
TGTTGACCGCGCGTAATATTTTCCCTAGTATCGATAACGTACCAAAGCCG
CCGAAAATCGATAACTTTTTATCATCTCGTGACCAAAATTCAACGAACAA
CGAAAACGCATCGACTATTTTTGAAGGGTGGGGTCAGAGAAAAAGGCATA
TACTGAAAGAGAAATACCGCCCATCTCCGCCTCAAGACGTAGAGCTCCAT
ATTAAAGCTATTGATCCAGTCTTAAAACATATGACTCTGTTATCTTTAAA
TAAAGATAACGAAATAACTTCACCTCCATTGAATGAACAGGGACAAGTTT
GGAAACAAAACGAGTCAGTGGTTTCAAAGCATGTCCAAAAGACACACCCG
ATCGAAGAGGATAAAACTAAAAAACCATTAGGGGCATTGAAAGTGAAATT
TCCAGTACCAAATTCTTGATGTTGAACTTTTATTTATATATGTTTGCTAT
GATTCATTTCTAATACTTTTTATTTATACTTTAATTTAGTTTGGCATTTT
TAGTCCTTATCTAATTATTGATTTTGGTGTAAAAAAATGGAGTTGAGTCA
AAACTTATTTACTACTACCATGAATTCTAAGTTTTCACTTTTTATTAATA
ATTTTTCATTTTTACAATAAAACTATAGAATATCATCCTTGTCAGCTTTT
TTGAAAATTTGTCCATAGTTTAAAAAAAGTTTTTTTGATACAGCACAT Coding sequence (CDS) from alignment at scaffold_120:249360..251007- >TCONS_00047034 ID=TCONS_00047034|Name=TCONS_00047034|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_120:249360..251007- (Clytia hemisphaerica)
GCCGCCAGACGTCTTATTTACTCGCACCCATCAGTGGCCGGTCGGTGCCG
AACCCTTCAAAGGCAGCTCGGTGGAAAGAAGGCAAGATCAAATGAAGCAA
GAGCTCAAGAAACGAATCTCCCTTCAATAAACAAAACAAACATAGATGAG
ATGGCAGTAACACCACCTTTGATTTGTAAATCCTATTCAGCTCCTTCTCT
CATGAGAGGCTTACATAAAACACAAAAACCAGATCTTGAAATGTTGGATT
TAATTGCGTTGGGAAATTTTGGCCACGAACGGACTCAATCATCATCAGCT
GTTCGTAAATTTGTTGTTTCGCCTTCGATGTTGACCGCGCGTAATATTTT
CCCTAGTATCGATAACGTACCAAAGCCGCCGAAAATCGATAACTTTTTAT
CATCTCGTGACCAAAATTCAACGAACAACGAAAACGCATCGACTATTTTT
GAAGGGTGGGGTCAGAGAAAAAGGCATATACTGAAAGAGAAATACCGCCC
ATCTCCGCCTCAAGACGTAGAGCTCCATATTAAAGCTATTGATCCAGTCT
TAAAACATATGACTCTGTTATCTTTAAATAAAGATAACGAAATAACTTCA
CCTCCATTGAATGAACAGGGACAAGTTTGGAAACAAAACGAGTCAGTGGT
TTCAAAGCATGTCCAAAAGACACACCCGATCGAAGAGGATAAAACTAAAA
AACCATTAGGGGCATTGAAAGTGAAATTTCCAGTACCAAATTCTTGAATG
GTGAATTGGCGTGACGAGTTTGAAAGTAAGCGGCGTTTCGAGGCCGCCAG
ACGTCTTATTTACTCGCACCCATCAGTGGCCGGTCGGTGCCGAACCCTTC
AAAGGCAGCTCGGTGGAAAGAAGGCAAGATCAAATGAAGCAAGAGCTCAA
GAAACGAATCTCCCTTCAATAAACAAAACAAACATAGATGAGATGGCAGT
AACACCACCTTTGATTTGTAAATCCTATTCAGCTCCTTCTCTCATGAGAG
GCTTACATAAAACACAAAAACCAGATCTTGAAATGTTGGATTTAATTGCG
TTGGGAAATTTTGGCCACGAACGGACTCAATCATCATCAGCTGTTCGTAA
ATTTGTTGTTTCGCCTTCGATGTTGACCGCGCGTAATATTTTCCCTAGTA
TCGATAACGTACCAAAGCCGCCGAAAATCGATAACTTTTTATCATCTCGT
GACCAAAATTCAACGAACAACGAAAACGCATCGACTATTTTTGAAGGGTG
GGGTCAGAGAAAAAGGCATATACTGAAAGAGAAATACCGCCCATCTCCGC
CTCAAGACGTAGAGCTCCATATTAAAGCTATTGATCCAGTCTTAAAACAT
ATGACTCTGTTATCTTTAAATAAAGATAACGAAATAACTTCACCTCCATT
GAATGAACAGGGACAAGTTTGGAAACAAAACGAGTCAGTGGTTTCAAAGC
ATGTCCAAAAGACACACCCGATCGAAGAGGATAAAACTAAAAAACCATTA
GGGGCATTGAAAGTGAAATTTCCAGTACCAAATTCTTGAATGGTGAATTG
GCGTGACGAGTTTGAAAGTAAGCGGCGTTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047034-exon-scaffold_120-1575043694:250449..251007 | TCONS_00047034-exon-scaffold_120-1575043694:250449..251007 | Clytia hemisphaerica | exon |
| TCONS_00047034-exon-scaffold_120-1575043694:249360..250385 | TCONS_00047034-exon-scaffold_120-1575043694:249360..250385 | Clytia hemisphaerica | exon |
| TCONS_00047034-exon-scaffold_120-1510915933:250449..251007 | TCONS_00047034-exon-scaffold_120-1510915933:250449..251007 | Clytia hemisphaerica | exon |
| TCONS_00047034-exon-scaffold_120-1510915933:249360..250385 | TCONS_00047034-exon-scaffold_120-1510915933:249360..250385 | Clytia hemisphaerica | exon |
| TCONS_00047034-exon-scaffold_120-1491911889:250449..251007 | TCONS_00047034-exon-scaffold_120-1491911889:250449..251007 | Clytia hemisphaerica | exon |
| TCONS_00047034-exon-scaffold_120-1491911889:249360..250385 | TCONS_00047034-exon-scaffold_120-1491911889:249360..250385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:249360..251007 - |
Blast
The following BLAST results are available for this feature:
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