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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047021 ID=TCONS_00047021|Name=TCONS_00047021|organism=Clytia hemisphaerica|type=transcript|length=3121bpRun BLAST on NCBI protein sequence of TCONS_00047021-protein >TCONS_00047021-protein ID=TCONS_00047021-protein|Name=TCONS_00047021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MSKKRENSVCYTAGRPPWYNSHGQMTNAFLIGICGGSASGKTTVAKKIIERun BLAST on NCBI transcript from alignment at scaffold_120:114107..125545- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047021 ID=TCONS_00047021|Name=TCONS_00047021|organism=Clytia hemisphaerica|type=transcript|length=11439bp|location=Sequence derived from alignment at scaffold_120:114107..125545- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_120:114107..125545- >TCONS_00047021 ID=TCONS_00047021|Name=TCONS_00047021|organism=Clytia hemisphaerica|type=CDS|length=25110bp|location=Sequence derived from alignment at scaffold_120:114107..125545- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047021 vs. Swiss-Prot (Human)
Match: UCKL1 (Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2) HSP 1 Score: 516.153 bits (1328), Expect = 6.509e-171 Identity = 286/452 (63.27%), Postives = 353/452 (78.10%), Query Frame = 2
Query: 83 YTAGRPPWYNSHG-QMTNAFLIGICGGSASGKTTVAKKIIEELGVPWVVIISLDSFYKVLTPEQHEQAERAEYNFDHADAFDWALACKTLRKLKEGKNAKIPIYDFSTHSRLEKEKTVYGANVVIFEGIMTFADPELLKLFDIKVFVDTDXXXXXXXXXXXXXXXXGRDITSVLKQYDKFVKPMFEKFIAPSMKDADIVVPWEGTNNVAIDLIVKHISNQLEKRGFNFRSELISNHVGEPLPANLHEVENTPQVRGLQXXXXXXXXXXXXFVFYSKRLMRILMEKTMSLLPFEPCEVDTPSERRYTGMRFGG-DICGVSILRAGEALEEALVSVCKDVKIGKILIQTNKNTTEPELHYLRLPRNMSKYQVIXXXXXXXXXXXXXXXIRILLDHDVKEENITFVSLIMARPGVYTIASAFPKVRIVTASVDPDTNEKFHIIPGIGNFGNRFFG 1432
YTAGRPPWYN HG Q AF IG+ GGSASGKTTVA+ IIE L VPWVV++S+DSFYKVLT +Q EQA +NFDH DAFD+ L TL+KLK+GK+ K+PIYDF+THSR + KT+YGANV+IFEGIM FAD LL+L D+K+FVDTDSDIRL RRLRRDISERGRDI V+KQY+KFVKP F+++I P+M+ ADIVVP N VAIDLIV+H+ +QLE+R + R+ L S H PLP L +++TPQVRG+ IIRD RD+F+FYSKRLMR+L+E +S LPF+ C V TP + Y G + G I GVSILRAGE +E AL +VCKDV+IG ILIQTN+ T EPELHYLRLP+++S VILMD TV+TGAAA+MA+R+LLDHDV E+ I +SL+MA GV+++A AFP+VRI+T +VD N+ F IIPGIGNFG+R+FG
Sbjct: 80 YTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVPRGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFG 531 The following BLAST results are available for this feature:
BLAST of TCONS_00047021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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