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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047013 ID=TCONS_00047013|Name=TCONS_00047013|organism=Clytia hemisphaerica|type=transcript|length=4959bpRun BLAST on NCBI protein sequence of TCONS_00047013-protein >TCONS_00047013-protein ID=TCONS_00047013-protein|Name=TCONS_00047013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1413bp QLAVVGEEILIFYNDHSSFASLLEMMQSERERSEESSPLLYHISLVRLLARun BLAST on NCBI transcript from alignment at scaffold_120:9976..34689- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047013 ID=TCONS_00047013|Name=TCONS_00047013|organism=Clytia hemisphaerica|type=transcript|length=24714bp|location=Sequence derived from alignment at scaffold_120:9976..34689- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_120:9976..34689- >TCONS_00047013 ID=TCONS_00047013|Name=TCONS_00047013|organism=Clytia hemisphaerica|type=CDS|length=106050bp|location=Sequence derived from alignment at scaffold_120:9976..34689- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047013 vs. Swiss-Prot (Human)
Match: ITPR1 (Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens GN=ITPR1 PE=1 SV=3) HSP 1 Score: 1281.54 bits (3315), Expect = 0.000e+0 Identity = 747/1452 (51.45%), Postives = 996/1452 (68.60%), Query Frame = 3
Query: 3 QLAVVGEEILIFYNDHSSFASLLEMMQXXXXXXXXXXPLLYHISLVRLLASCTEGKNVYTEIKCHSLLPLDDIVRIVTHPDCIPEVKSAYVHFLNHCYVDTEVEMKEIYSSSHIWTLFEDFMVDMGKVATTTHDRKHADTLLEDYVTTVIPEILTVFFNSPFSEASTTIKARQPIFVSLLSALFRLSQCQWMTGTQKYQIETCIQNLLEIAKPRGIAIPSDLEVEVQSLVTKS-KLVLRHSRHW-LSHRQ--RKDSVMLMSMSKDYRNIIEGLQDIVALLEDQLRPLVEAESSLLVDIMYHPHLLFAVDSENRARANNGGFIKKLIVHTNSLMS-GDENLCIEVLNALQQMLNKESDFGEK---------------------------------------GDRLRTSLIMLYFNADELPYKTKEQYKKEDDG----------------TSSIFLYRANRTLYDMQCMMDINGATDLVIDLIMADPSPNIFLECIQLAISLLDGGNGTVQKSFYKRFLY-SKTEAFFQYIYDQITEAKDEIRSTITMNTDSVXXXXXXXXXXXXXDPMTRRETINLLKRDSKDTHVLGMLVSLSDDVKEQLTDAAQQTNKAYSAVRKGREGDN----SEGSKGPFPESVKSSSVGSYLAPEIVTMQPILRFLQLLCENHNTEMQNYLRKQEHKKSYNMVQETLTFLDCICGSTTXXXXXXXXYINEHNVGLINQSLCTLTEYCQGPCHDNQNAIVSHECNGMDIIIALVLNEINPLSKHRMDLVMELKDNASKLLLAIMESRHDSENAEKILYNMSPNTLVEVCKQVYHQEEI-----DTATDSEISPRDVGHNIYILAYQLSQHNTELSDLLKQDLEEGEDEAETAHADHQATFVQSDPALQFYSKSTAQIEVVRKDRVLEQIIYPVPSICEFLTDKKKDEVYYTCERDEHNSKVADFFERTEDLYKEMIWQKRLRDKPWLFWFSHNWQIWETXXXXXXXXXXXXXXFFYPFSN-DAMDLDHRLSILIWLAIFVSFIVCVTVPRLSGIRTLAGAVILRMIFTLGTIPTLNLIGAFNLLNRFVLTVSYIGNSGILSGTSFQRLISDKFLLMMVNCLIICGLGLFVHEFFYCVLVIDVIAREETLLXXXXXXXXXXXXIXXXXXXXXXXXXXFSIIGFLFFQEDFVMETEPLKVEALPN-AFCQANDTNCNSSALLPNILKKDGG--ASSPSSTEE----ESDGKVQENACDSLLMCIVFTMNNGLRSGGGIGDVLRAPSRGDRYFTARXXXXXXXXXXXXXXXXXXXXXXXXDTFADLRSEKQTKEEILKNSCFICGLKRADFDNRTVTFEQHINNEHNMWDYLYFIVLIKVKDPTEFTGPESYVAEMIKNNNLDWFPHLRCMSLSVDDAESEQNEIRNLQIQLESTNQIVHTLSKQLTELREQMIEQRKNKQKLGLLQLPAH 4124
+L GE++L+FYND +SF +L++MM+SER+R +E+SPL+YHI LV LLA CTEGKNVYTEIKC+SLLPLDDIVR+VTH DCIPEVK AY++FLNHCYVDTEVEMKEIY+S+H+W LFE+F+VD+ + T DRKHAD++LE YVT ++ I+T FF+SPFS+ STT++ RQP+FV LL +FR+ C W+ +QK +E+CI+ L ++AK R IAIP DL+ +V +L KS +V + + +W LS R R+DSV+ + S+DYRNIIE LQDIV+ LED+LRPLV+AE S+LVD+++ P LLF +++ R + +GGFI KLI HT L+ +E LCI+VL L++M+ K+ +GEK G+ LR L+ Y+ + P +E +G + S + R +L ++QC +D GA++LVIDLIM S +F E I LAI+LL+GGN T+Q SF+ R K+E FF+ YD++ A+ EI++T+T+NT + K++ D R+ + K T + +++V++QL +A+ T KA++ R+ + D+ EG++ + + ++ I MQPILRFLQLLCENHN ++QN+LR Q +K +YN+V ETL FLDCICGSTTGGLGLLGLYINE NV LINQ+L +LTEYCQGPCH+NQN I +HE NG+DII AL+LN+INPL K RMDLV+ELK+NASKLLLAIMESRHDSENAE+ILYNM P LVEV K+ Y Q E+ + D SPR+VGHNIYILA+QL++HN EL +LK + V D AL+FY+K TAQIE+VR DR +EQI++PVPSICEFLT + K +YYT ERDE SK+ DFF R+EDL+ EM WQK+LR +P L+W + N W +I+ NLA+++NLLVAFFYPF L+ S L+W A+ +S + + +P+ GIR L + ILR+IF++G PTL L+GAFN+ N+ + +S++GN G + ++ ++ D L + L+IC +GLFVHEFFY +L+ D++ REETLLNV++SVTRN RSI+LT +LAL+LVYLFSI+G+LFF++DF++E V+ LPN + S L ++ + + G SSP+ EE E + +E+ C++LLMCIV +++GLRSGGG+GDVLR PS+ + F ARVIYDLLFFF+VIIIVLNLIFGVIIDTFADLRSEKQ KEEILK +CFICGL+R FDN+TVTFE+HI EHNMW YL FIVL+KVKD TE+TGPESYVAEMIK NLDWFP +R MSL D+E EQNE+RNLQ +LEST ++V LS QL+EL++QM EQRK KQ++GLL P H
Sbjct: 1343 ELVNSGEDVLVFYNDRASFQTLIQMMRSERDRMDENSPLMYHIHLVELLAVCTEGKNVYTEIKCNSLLPLDDIVRVVTHEDCIPEVKIAYINFLNHCYVDTEVEMKEIYTSNHMWKLFENFLVDICRACNNTSDRKHADSILEKYVTEIVMSIVTTFFSSPFSDQSTTLQTRQPVFVQLLQGVFRVYHCNWLMPSQKASVESCIRVLSDVAKSRAIAIPVDLDSQVNNLFLKSHSIVQKTAMNWRLSARNAARRDSVL--AASRDYRNIIERLQDIVSALEDRLRPLVQAELSVLVDVLHRPELLFPENTDARRKCESGGFICKLIKHTKQLLEENEEKLCIKVLQTLREMMTKDRGYGEKLISIDELDNAELPPAPDSENATEELEPSPPLRQLEDHKRGEALRQVLVNRYY-GNVRPSGRRESLTSFGNGPLSAGGPGKPGGGGGGSGSSSMSRGEMSLAEVQCHLDKEGASNLVIDLIMNASSDRVFHESILLAIALLEGGNTTIQHSFFCRLTEDKKSEKFFKVFYDRMKVAQQEIKATVTVNTSDLGNKKK--------DDEVDRDAPSRKKAKEPTTQI-------TEEVRDQLLEASAATRKAFTTFRREADPDDHYQPGEGTQA----TADKAKDDLEMSAVITIMQPILRFLQLLCENHNRDLQNFLRCQNNKTNYNLVCETLQFLDCICGSTTGGLGLLGLYINEKNVALINQTLESLTEYCQGPCHENQNCIATHESNGIDIITALILNDINPLGKKRMDLVLELKNNASKLLLAIMESRHDSENAERILYNMRPKELVEVIKKAYMQGEVEFEDGENGEDGAASPRNVGHNIYILAHQLARHNKELQSMLKPGGQ-----------------VDGDEALEFYAKHTAQIEIVRLDRTMEQIVFPVPSICEFLTKESKLRIYYTTERDEQGSKINDFFLRSEDLFNEMNWQKKLRAQPVLYWCARNMSFWSSISFNLAVLMNLLVAFFYPFKGVRGGTLEPHWSGLLWTAMLISLAIVIALPKPHGIRALIASTILRLIFSVGLQPTLFLLGAFNVCNKIIFLMSFVGNCGTFT-RGYRAMVLDVEFLYHLLYLVICAMGLFVHEFFYSLLLFDLVYREETLLNVIKSVTRNGRSIILTAVLALILVYLFSIVGYLFFKDDFILE-----VDRLPNETAVPETGESLASEFLFSDVCRVESGENCSSPAPREELVPAEETEQDKEHTCETLLMCIVTVLSHGLRSGGGVGDVLRKPSKEEPLFAARVIYDLLFFFMVIIIVLNLIFGVIIDTFADLRSEKQKKEEILKTTCFICGLERDKFDNKTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIKERNLDWFPRMRAMSLVSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSELKDQMTEQRKQKQRIGLLGHPPH 2749 The following BLAST results are available for this feature:
BLAST of TCONS_00047013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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