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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047006 ID=TCONS_00047006|Name=TCONS_00047006|organism=Clytia hemisphaerica|type=transcript|length=393bp
AACAAGGTGAGTGaggccattttttcaaaacaaacaaaatttcaaaaaat
atttaaaaagaaaagactCAGCAGGGGACCTGATCACAAAAAGATAATGG
GGACTGAAATGCCAGAGATCCAGATCAATGAAGTCCTTTTGGAGATTGAT
GAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCCACCACATCAAATGA
TGAAATTATCCATGTCCtgttaaaatcatttttatctgaaaaagacACTA
AGGATTTGCGAAAAGAGATAAAAGAAGTtaagattgaaaaaaaactaaca
gGAAAGCAAATCAAAAAGaacatttatttgttattcaataTCAAAAGAGA
ATTTGTGATAAAGTTACGTAACAGCAACAAATCCCTGGTTCCN Run BLAST on NCBI transcript from alignment at scaffold_120:222499..225059+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047006 ID=TCONS_00047006|Name=TCONS_00047006|organism=Clytia hemisphaerica|type=transcript|length=2561bp|location=Sequence derived from alignment at scaffold_120:222499..225059+ (Clytia hemisphaerica)
AACAAGGTGAGTGaggccattttttcaaaacaaacaaaatttcaaaaaat
atttaaaaagaaaagactCAGCAGGGGACCTGATCACAAAAAGATAATGG
GGACTGAAATGCCAGAGATCCAGATCAATGAAGTCCTTTTGGAGATTGAT
GAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCCACCACATCAAATGA
TGAAATTATCCATGTCCtgttaaaatcatttttatctgaaaaagacACTA
AGGATTTGCGAAAAGGTATCCAACCATTgcattatttgtttttattcagT
AGTTATTTATTTTACAATGCTCAAACGCAAACCAAGATGGATATGTAGGC
ATTGCCTTAAGATAGTCTAAACTATTAAAaatacaatttaaaaaaagcac
tactttttataaactttgttatcagcagaaaaataaaaaagtaaataaat
gaaaattgctgttttcggcaattatggccgttttttggaaataaaagttg
attttattatctatttattttttctatctattatcagtaggcccactgtg
cctcgtttagttttgttttcaactggtttttgttggaaatgcagatagca
aaatcgagtcatatgtaaacaataCAAATTTACAACAGGGGTTTTGTTAT
CTCATTCTGGCTGTGTTTTGGCATGCAttgatgcaggatcttttaacata
ttattttagaacttttcatgttattgagcaaccaaaatttgaaagaatta
tatacttttaaaaatctgaaaaacctttttcttctccatgcaattttact
attttcaaatacctctgacatctttgcccttaaaaggacgacacattttg
ctgattcagcatttcatcgttgaaaaaattgccattttcggcaataattg
ccaaaaagagcaataattgccgtttttatcttaaacacccaactggtTAT
GATTACTTGGGAAtcatataaataaataaacataaaaaagaaCAGAATAA
TAATAAAGGCATTATCTTTGCTTTCTTACCTAGGGTGGGAGATttgaaga
aacaaagaaaactcATAGGTTCAGgttttggcctttaaagagcctggggg
ctaaaattaccaaaatatttgggggcCTAGTTTGTTGGGGGAGCctagat
gatctgactgagactctgggggctgttcagctaaattaaaaagatatctt
atcttactattaaatcaaatataaaaagcaaaagacttgtaaacataaat
attaaaacaagtaaaatttagttttcatttatcagtactgtactGTGTtg
ggagaacaatgtttttgtttttgtttatcttaggacctgaagtgttaggg
gacctagcacaaggcaattttttggagggagctaaattgttggggggGGG
ACCCTACTTTGTTGTGGGGAGCTAGAAACCTAACTGAAGCTATGAAACTG
TGAAAATTTACAGATGGATACCTTTAAAGTTGGTCTCACTAACGTCAACA
TCCCTCTACTAGCACTAAtaccgacacccttctttagagataggaataat
atgaaggtcggaatcactaatagagaaaatatttttccctcTCTGATTGC
TAAACAACcgaaattattttcaatcagcgattctgaccttcctattttat
tcctatctttaaagggggtcgaaattagaagagggatgtcgacattagac
caatttACGGTATAAAATAGAACATGTgttttaatttgatatttttcatt
gatttattttcaGAGATAAAAGAAGTtaagattgaaaaaaaactaacagG
AAAGCAAATCAAAAAGGTGAGTTATACATGCTACCGTCAACCGTAAGTta
gtctaatatcgacatccctagtctaattccgacacacccttctttagaga
caggaatatatgaaagcttgaatcattgattgaaaaaggattattcctct
ctgaccactaagaaaaaaaacagtttcaacctttctatcaatttcagctg
atttgggtgtcggaattagaggagggatgtcgacattagaccaagttacg
gtatgtaaaaaaactttctttctgaattaaaaaaaataatttttcgaaaa
gtgttCAAACATAAGAGTTCACAAAATTCCcaagtttttggctttttcgT
CAGAAAATCCACTACATTAAGCAAACTCCATAGATTTTCAAGAGAGGTAA
TAATATCAATATTCAAACCAGGAAAACAAATTTAATCCAAGTCTTTTTGG
CATTCAATCTTGGCCATAAAAATTTATTGTCAAAATCTTATGAAATTATA
ATAtcactttttcttttaagaacatttatttgttattcaataTCAAAAGA
GAATTTGTGATAAAGGtgagaaaatttaagaatataaaTTAGGGTTGCTT
ATTATTGCAAACTTTGATTACTATATCCCCTCTTGTCATCCAGAAAAATC
AAGTTCCCTCAAAATTGTGCTACAAGTATCAAATCTAATCCTTTCAAAAT
CCAAACCCTGACAAGTGTCCTTCTTTTTTAGTTACGTAACAGCAACAAAT
CCCTGGTTCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047006-exon-scaffold_120-1491911889:222499..222763 | TCONS_00047006-exon-scaffold_120-1491911889:222499..222763 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1510915933:222499..222763 | TCONS_00047006-exon-scaffold_120-1510915933:222499..222763 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1575043694:222499..222763 | TCONS_00047006-exon-scaffold_120-1575043694:222499..222763 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1491911889:224262..224314 | TCONS_00047006-exon-scaffold_120-1491911889:224262..224314 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1510915933:224262..224314 | TCONS_00047006-exon-scaffold_120-1510915933:224262..224314 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1575043694:224262..224314 | TCONS_00047006-exon-scaffold_120-1575043694:224262..224314 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1491911889:224819..224863 | TCONS_00047006-exon-scaffold_120-1491911889:224819..224863 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1510915933:224819..224863 | TCONS_00047006-exon-scaffold_120-1510915933:224819..224863 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1575043694:224819..224863 | TCONS_00047006-exon-scaffold_120-1575043694:224819..224863 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1491911889:225030..225059 | TCONS_00047006-exon-scaffold_120-1491911889:225030..225059 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1510915933:225030..225059 | TCONS_00047006-exon-scaffold_120-1510915933:225030..225059 | Clytia hemisphaerica | exon |
| TCONS_00047006-exon-scaffold_120-1575043694:225030..225059 | TCONS_00047006-exon-scaffold_120-1575043694:225030..225059 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:222499..225059 + |
Blast
The following BLAST results are available for this feature:
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