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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047001 ID=TCONS_00047001|Name=TCONS_00047001|organism=Clytia hemisphaerica|type=transcript|length=1351bp
tttagcTTCATAACAAAGAACTGGCGGAATGTCGCGAACGATTCGAAATT
TTACACAATGAAAATACTGAGAAAGAAACAAATAATATTCAAAAGAAGCA
GAAACTCATTTCATCGAGTGAAGAATTAGGTGAAATACTTTTGGCGATCG
AAAATCTCAGTTCTTTTTGTGGCAGTAAGAACGTGGAAGAAAAATTCTCT
ACTCCTGAACTAAAGCTGAAATTGATAAGTACGTACTTACAAGATCGCGA
AGATGTGTATCAAATGACTTGCCAGTTAATACAACAAAGTTTACCTCAAC
AACCAACGCAAAATTCTTCCAAACCTTCAACTCAATCCTCAACACGCTCT
TCAAGGAGCAGGTGACATTACTTTTAACGACATCGTTATCAAtatacact
cccttctcacagacctggtaggattttttcagccagtagggGTGAaagta
acggactgaaactcgatggggattgatattcccgtattttttatggctgg
ggatttcaattcttttgtcagaaaattcagtggagatgggaagaaaaaca
tcatattttgcagtgaggattggtttatttgattattttcagtggggaca
aaaattggagaataattttccactggggactaTATTCtagacaatttttc
cagtgggaagggttcccagtgggtctgtgagcaGGGTTGTATATCCCGCC
ACACTCTCATACTAGTCACGAAAATATGTAAATAAGCACCGTGAAGTTTC
CGCaagatattattttattttacatacACATTTTTAGATAATACTTATTT
TTAGTCCTTGAAATTAATTTATTCTTTTATAAACTTTGTACGATAGTCTA
GATTTGTTTTGAACATTTTAAACCTCTCCCTTCTCACGTATGGTAGACCT
ACTATATCTGCTTATTGACGGCGTTGCCTTTGTCGTAATACGTAGACCTA
CTATATCTGCTTATTGACTTATTTTCTTTGTCGTAATATACTCTCTTTCA
CTATCAGTAACAAAGAAAAAAGGAGTTGAGCTCCGGATCTTGAACCTTTG
ATAAATCATTGCTCATTTGCACGATTTTTGTACTCGTGAAACATCCTCAA
TTTTCTTGGGAttcaaccattgagtttcaagcccgaagggctagaggcga
aacttaaCCCTTATCAGGCaacaaaaagtgaagccacttatttcccatcc
aaaacgcgcgtagaacgcgccgtaatcatgacgacgggttgtatctagcg
gttcctttattttcgaggactacatttttcgaaatctagcgatagatttt
agtttcaatccggcgtttgtgtaaagaCTACgtgcgggcgttctggatgN
N Run BLAST on NCBI transcript from alignment at scaffold_12:9219..12027- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047001 ID=TCONS_00047001|Name=TCONS_00047001|organism=Clytia hemisphaerica|type=transcript|length=2809bp|location=Sequence derived from alignment at scaffold_12:9219..12027- (Clytia hemisphaerica)
TTTAGCTTCATAACAAAGAACTGGCGGAATGTCGCGAACGATTCGAAATT
TTACACAATGAAAATACTGAGAAAGAAACAAATAATATTCAAAAGAAGCA
GAAACTCATTTCATCGGTGAGCTTGATAGCTTAATATGTCAAGCTTAGAG
CTTAAAGTTTTAAAACCTTGTTTCACTAAAAAAAAAAGTTTTTCTCACTA
GATGATACTAAGAGTATAGAAAACTAACGTCGAATCACTGACCTTTATAT
ACCCTGGACAAAGTTTCTCAACCCCGGCCAAACAAAATCTTTGATCGGAG
TTTTTTGAAAGTGGTACCCTAATGGTAGCACTACTCAATGATGATGTAAT
GCATCGAGAGTGATAGATCTACTGTTCGTGGAATAATTTTGATGATGTAG
CTCCGTTAAACGTTAATTCTTAACATTGCAATGGCTCCTTTGCGAGTACC
ATCTTCAAAAAAATCCGATCAAAGATTGCGGATATAGCTTTGTCAAGGAA
TATATAAACGTCAGTGCGTCTAATTTAATCTTTACAATTTTTAATGTTCT
AATGAAGATCATTGCTTCTCATCAAATCGAATATTTTGTAGCTATTATCT
TGTAGCTGTTATCTTTTTCAAACATTTTAGTTAAACTCTACCTAAATTTT
TTTCTCTTACAGAGTGAAGAATTAGGTGAAATACTTTTGGCGATCGAAAA
TCTCAGTTCTTTTTGTGGCAGTAAGAACGTGGAAGAAAAATTCTCTACTC
CTGAACTAAAGCTGAAATTGATAAGTGTATGTATTTAGCTTTATTGGTCG
TACAAATTTCACTATGTAAAATACCTTGGTCCGTAATAAAGGACCATTAC
TTATGACCCCTTACAACAATTTTCGGAGTGGAATATTTTTGGCCTATACA
AAAAGAATTTAGAGTATTTGAATCATAAAATCGCATCTATTCAAGGCTTG
AAAGTTTCTCAGATTCATTTGGCAGAACTACGAAATTTAAACATGCAGTC
TTATCTTATTTTACGTTCGAGTAAGGGAGTCATTTCAAAATCTAGTCCTA
TCAAAACGTTATCTTTATACTGTNTTTTACGTTCGAGTAAGGGAGTCATT
TCAAAAGCTAGTCCTATCTTTATACTGCTTACATCACCGGTATGACTATA
CGCAAATAATAAGATTTTTACGAGTCTGTTTTTGAGATCTTCAAATCTTA
CTGGGGTGAGAACCAGTGGAACCTTGCCTTGATTTCCATCTAGTCAGCGA
CAAAACTTGAATCTGGGCTATCATGTCATTTTATCACCATCTGTCTTACA
TTCTAAGTACTAAAAGCTAAGGCAATAAAAAGAAGGGTATACTGTAGCTT
TACTGTAATTCAGGATATTCATTGAATTTATTTATTTATTTATTTATTCA
CAAACCTTTTGATGCAATTTACTGAACCCTCATAACTTAAACAAGAGGTT
AAACAGTGTATTTACGAAATTCTTTTTGCAAGGGTTGCAGAGTTTATTTG
AAGGTTTTTAAAGATATTTTCCAATTTTTTTACGGAGAATTTGGATTAAT
TTTGACAGAGTTTTTCTCCATATCCCACAAGACCTTAAAATTAGGCTATT
TTATGCAATTTCTTTCGAAGCCGTGAATCTGATCGGCTCATTGATACAAG
ATTATACTAATCATCGTGTTTTTTTCTTCTCTATATAGACGTACTTACAA
GATCGCGAAGATGTGTATCAAATGACTTGCCAGTTAATACAACAAAGTTT
ACCTCAACAACCAACGCAAAATTCTTCCAAACCTTCAACTCAATCCTCAA
CACGCTCTTCAAGGAGCAGGTGACATTACTTTTAACGACATCGTTATCAA
TATACACTCCCTTCTCACAGACCTGGTAGGATTTTTTCAGCCAGTAGGGG
TGAAAGTAACGGACTGAAACTCGATGGGGATTGATATTCCCGTATTTTTT
ATGGCTGGGGATTTCAATTCTTTTGTCAGAAAATTCAGTGGAGATGGGAA
GAAAAACATCATATTTTGCAGTGAGGATTGGTTTATTTGATTATTTTCAG
TGGGGACAAAAATTGGAGAATAATTTTCCACTGGGGACTATATTCTAGAC
AATTTTTCCAGTGGGAAGGGTTCCCAGTGGGTCTGTGAGCAGGGTTGTAT
ATCCCGCCACACTCTCATACTAGTCACGAAAATATGTAAATAAGCACCGT
GAAGTTTCCGCAAGATATTATTTTATTTTACATACACATTTTTAGATAAT
ACTTATTTTTAGTCCTTGAAATTAATTTATTCTTTTATAAACTTTGTACG
ATAGTCTAGATTTGTTTTGAACATTTTAAACCTCTCCCTTCTCACGTATG
GTAGACCTACTATATCTGCTTATTGACGGCGTTGCCTTTGTCGTAATACG
TAGACCTACTATATCTGCTTATTGACTTATTTTCTTTGTCGTAATATACT
CTCTTTCACTATCAGTAACAAAGAAAAAAGGAGTTGAGCTCCGGATCTTG
AACCTTTGATAAATCATTGCTCATTTGCACGATTTTTGTACTCGTGAAAC
ATCCTCAATTTTCTTGGGATTCAACCATTGAGTTTCAAGCCCGAAGGGCT
AGAGGCGAAACTTAACCCTTATCAGGCAACAAAAAGTGAAGCCACTTATT
TCCCATCCAAAACGCGCGTAGAACGCGCCGTAATCATGACGACGGGTTGT
ATCTAGCGGTTCCTTTATTTTCGAGGACTACATTTTTCGAAATCTAGCGA
TAGATTTTAGTTTCAATCCGGCGTTTGTGTAAAGACTACGTGCGGGCGTT
CTGGATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047001-exon-scaffold_12-1575043694:11912..12027 | TCONS_00047001-exon-scaffold_12-1575043694:11912..12027 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1575043694:11252..11365 | TCONS_00047001-exon-scaffold_12-1575043694:11252..11365 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1575043694:9219..10339 | TCONS_00047001-exon-scaffold_12-1575043694:9219..10339 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1510915933:11912..12027 | TCONS_00047001-exon-scaffold_12-1510915933:11912..12027 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1510915933:11252..11365 | TCONS_00047001-exon-scaffold_12-1510915933:11252..11365 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1510915933:9219..10339 | TCONS_00047001-exon-scaffold_12-1510915933:9219..10339 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1491911889:11912..12027 | TCONS_00047001-exon-scaffold_12-1491911889:11912..12027 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1491911889:11252..11365 | TCONS_00047001-exon-scaffold_12-1491911889:11252..11365 | Clytia hemisphaerica | exon |
| TCONS_00047001-exon-scaffold_12-1491911889:9219..10339 | TCONS_00047001-exon-scaffold_12-1491911889:9219..10339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:9219..12027 - |
Blast
The following BLAST results are available for this feature:
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