TCONS_00046965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046965
Unique NameTCONS_00046965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046965 ID=TCONS_00046965|Name=TCONS_00046965|organism=Clytia hemisphaerica|type=transcript|length=2805bp
attcatcacaAATTATTCCACTCGTCGTTGAGGAGAATTTCAACTTACAG
TTGATGTTGACACTTGTACGTCGTGAGTTTGAGTTGATGTGTTCGACACT
TGTACGCACTTGTACATTTTCAGAAGAAGGTTGATCGTCGTAGGTTCGAG
TTGGAGCTTCTTGATCGTCGTTAACGTTAGTTTGCCGAGgaataaaaaaa
aggttttaagtcagtttaacaataaaaaacatttatcaTAAATCATTGCA
CTCGTTGTCGATTTTCCAATTCTTCGAGATTGAAGCAATTTATAGACAAA
TTACGAGGAAAAAAGGATGCATTCTTACTAGCATTTTAAttaattaaaga
aaatttcaacttacAGTTGATGTTTCAACTTCTTGATCGTCGTTAGTTTG
CTGAGGAAtaaaagaaaatgagaaaaaaattgatccTAATGAGAGAAAAT
ATGACTCACTGAGAGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGC
TGTAAAAGAGCTGAAAGCCTGCAAGAAACCGACCTGTGGGCCACCTATCC
CCTACGGGATAGAATATGTCAATAATCAAACAAaactaaatgaaaaaata
aaactaaaagaaaatgaaaaaaaaaattgatcttaTTGAGGGAAAATATG
ACTCACTGAGAGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGT
AAAAGAGCTGAAAGCCTGCAAGAAACCGACCTGTGGGCCACCTATCCCCT
ACGGGATAGAATATGTCAATAATCAAACAAaactaaatgaaaaaataaaa
ctaaaagaaaatgaaaaaaaaattgatcttaTTGAGGGAAAATATGACTC
ACTGAGAGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAA
GAACTGAAAGCCTGCAAGAAATCGAGCTGTGGGCCACCTATCCCCTACGG
GATAGAATATGTCAATAATCAAACAAaactaaatgaaaaaataaaactaa
aaaaaaagaaaaaaaattgatcctAGTGAGAGAAAATAAGACTCACTGAG
AGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAAGAACTG
ACAGCCTGCAAGAAACCGAGCTGTGGGCCACCTACAATTTGGGCCATAAA
CTGTAcgaaattgaatgaaaaacctttaaaactgaAATCTTTATTTTACT
TTACCTATGTAAAACAGAAGAATACCAAATAGGAACGAgaagaataattt
caataaccTGAGGtcaaacaaaaccaaacataaGCCTACGGAACAGAACA
CTAAATGAAACAGCAGAAACTCACCAACTCACGCAACCAACAGCAAACAA
CGTTTGAAAACGATCTCAAATTTGAAGTGCAAGAAATTGAACTGTTAGGG
TCAGCAACAAGCAACAAAGGTTAATGTCACAAGAAGTTTGTATTTACCTT
AATGTTTTGATTCAAAAAACGACGTTGACGTTTACGTTATACTGCaactg
aataaagaaaaaaaagaaattcatacaATATTTGACAAAGGGTAGGGGAA
AGAATATGTCAATAATCGAAACAAaactaaatgaaaaaataaaactaaaa
aaaaaatgaaaaaaaattgatcctAGTGAGAGAAAATAAGACTCACTGAG
AGAAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAAGAACTG
ACAGCCTGCAAGAAACCGAGCTGTGGGCCACCTACAATTTGGGCCATAAA
CTGTAcgaaattgaatgaaaaacctttaaaactgaAATCTTTATTTTACT
TTACCTATGTAAAACAGAAGAATACCAAATAGGAACGAgaagaataattt
caataaccTGAGGtcaaacaaaaccaaacataaGCCTACGGAACAGAACA
AATGAAACAGCAGAAACTCACCAACTCACGCAACCAACAGCAAACAACGT
TTGAAAACGATCTCAAATTTGAAGTGCACGAAATTGAACTGTTAGGGTCA
GCAACAAGCAACAAAGGTTAATGTCACAAGAAGTTTGTATTTACCTTAAT
GTTTTGATTCAAAAAACGACGTTGACGTTTACGTTATACTGCaactgaat
aaagaaaaaaaagaaattcatacaATATTTGACAAAGGGTAGGGGAAAGA
ATATGTCAATAATCGAAACAAaactaaatgaaaaaataaaactaaaaaaa
aaatgaaaaaaaattgatcctAGTGAGAGAAAATAAGACTCACTGAGAGT
AAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAAGAACTGAAA
GCCTGCAAGAAACCGAGCTGTGGGCCACCTACAATTTGGGCCATAAACTG
TAcgaaattgaatgaaaaacctttaaaactgaAATCTTTATTTTACTTTA
CCTATGTAAAACAGAAGAATACCAAATAGGAACGAgaagaataatttcaa
taaccTGAGGtcaaacaaaaccaaacataaGCCTACGGAACAGAACACTA
AATGAAACAGCAGAAACTCACCAACTCACGCAACCAACAGCAAACAACGT
TTGAAAACGATCTCAAATTTGAAGTGCAAGAAATTGAACTGTTAGGGTCA
GCAACAAGCAACAAAGGTTAATGTCACAAGAAGTTTGTATTTACCTTAAT
GTTTTGATTCAAAAAACGACGTTGACGTTTACGTTATACTGCaactgaat
aaagaaaaaaaagaaattcatacaATATTTGACAAAGGGTAGGGGAAAGA
ATATGTCAATAATCGAAACAAaactaaatgaaaaaataaaactaaaaaaa
aaatg
Run BLAST on NCBI

transcript from alignment at scaffold_119:53625..56429+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046965 ID=TCONS_00046965|Name=TCONS_00046965|organism=Clytia hemisphaerica|type=transcript|length=2805bp|location=Sequence derived from alignment at scaffold_119:53625..56429+ (Clytia hemisphaerica)
attcatcacaAATTATTCCACTCGTCGTTGAGGAGAATTTCAACTTACAG
TTGATGTTGACACTTGTACGTCGTGAGTTTGAGTTGATGTGTTCGACACT
TGTACGCACTTGTACATTTTCAGAAGAAGGTTGATCGTCGTAGGTTCGAG
TTGGAGCTTCTTGATCGTCGTTAACGTTAGTTTGCCGAGgaataaaaaaa
aggttttaagtcagtttaacaataaaaaacatttatcaTAAATCATTGCA
CTCGTTGTCGATTTTCCAATTCTTCGAGATTGAAGCAATTTATAGACAAA
TTACGAGGAAAAAAGGATGCATTCTTACTAGCATTTTAAttaattaaaga
aaatttcaacttacAGTTGATGTTTCAACTTCTTGATCGTCGTTAGTTTG
CTGAGGAAtaaaagaaaatgagaaaaaaattgatccTAATGAGAGAAAAT
ATGACTCACTGAGAGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGC
TGTAAAAGAGCTGAAAGCCTGCAAGAAACCGACCTGTGGGCCACCTATCC
CCTACGGGATAGAATATGTCAATAATCAAACAAaactaaatgaaaaaata
aaactaaaagaaaatgaaaaaaaaaattgatcttaTTGAGGGAAAATATG
ACTCACTGAGAGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGT
AAAAGAGCTGAAAGCCTGCAAGAAACCGACCTGTGGGCCACCTATCCCCT
ACGGGATAGAATATGTCAATAATCAAACAAaactaaatgaaaaaataaaa
ctaaaagaaaatgaaaaaaaaattgatcttaTTGAGGGAAAATATGACTC
ACTGAGAGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAA
GAACTGAAAGCCTGCAAGAAATCGAGCTGTGGGCCACCTATCCCCTACGG
GATAGAATATGTCAATAATCAAACAAaactaaatgaaaaaataaaactaa
aaaaaaagaaaaaaaattgatcctAGTGAGAGAAAATAAGACTCACTGAG
AGTAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAAGAACTG
ACAGCCTGCAAGAAACCGAGCTGTGGGCCACCTACAATTTGGGCCATAAA
CTGTAcgaaattgaatgaaaaacctttaaaactgaAATCTTTATTTTACT
TTACCTATGTAAAACAGAAGAATACCAAATAGGAACGAgaagaataattt
caataaccTGAGGtcaaacaaaaccaaacataaGCCTACGGAACAGAACA
CTAAATGAAACAGCAGAAACTCACCAACTCACGCAACCAACAGCAAACAA
CGTTTGAAAACGATCTCAAATTTGAAGTGCAAGAAATTGAACTGTTAGGG
TCAGCAACAAGCAACAAAGGTTAATGTCACAAGAAGTTTGTATTTACCTT
AATGTTTTGATTCAAAAAACGACGTTGACGTTTACGTTATACTGCaactg
aataaagaaaaaaaagaaattcatacaATATTTGACAAAGGGTAGGGGAA
AGAATATGTCAATAATCGAAACAAaactaaatgaaaaaataaaactaaaa
aaaaaatgaaaaaaaattgatcctAGTGAGAGAAAATAAGACTCACTGAG
AGAAAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAAGAACTG
ACAGCCTGCAAGAAACCGAGCTGTGGGCCACCTACAATTTGGGCCATAAA
CTGTAcgaaattgaatgaaaaacctttaaaactgaAATCTTTATTTTACT
TTACCTATGTAAAACAGAAGAATACCAAATAGGAACGAgaagaataattt
caataaccTGAGGtcaaacaaaaccaaacataaGCCTACGGAACAGAACA
AATGAAACAGCAGAAACTCACCAACTCACGCAACCAACAGCAAACAACGT
TTGAAAACGATCTCAAATTTGAAGTGCACGAAATTGAACTGTTAGGGTCA
GCAACAAGCAACAAAGGTTAATGTCACAAGAAGTTTGTATTTACCTTAAT
GTTTTGATTCAAAAAACGACGTTGACGTTTACGTTATACTGCaactgaat
aaagaaaaaaaagaaattcatacaATATTTGACAAAGGGTAGGGGAAAGA
ATATGTCAATAATCGAAACAAaactaaatgaaaaaataaaactaaaaaaa
aaatgaaaaaaaattgatcctAGTGAGAGAAAATAAGACTCACTGAGAGT
AAAAGATGAAATTAGAAACGAAAATATCTAAGGCTGTAAAAGAACTGAAA
GCCTGCAAGAAACCGAGCTGTGGGCCACCTACAATTTGGGCCATAAACTG
TAcgaaattgaatgaaaaacctttaaaactgaAATCTTTATTTTACTTTA
CCTATGTAAAACAGAAGAATACCAAATAGGAACGAgaagaataatttcaa
taaccTGAGGtcaaacaaaaccaaacataaGCCTACGGAACAGAACACTA
AATGAAACAGCAGAAACTCACCAACTCACGCAACCAACAGCAAACAACGT
TTGAAAACGATCTCAAATTTGAAGTGCAAGAAATTGAACTGTTAGGGTCA
GCAACAAGCAACAAAGGTTAATGTCACAAGAAGTTTGTATTTACCTTAAT
GTTTTGATTCAAAAAACGACGTTGACGTTTACGTTATACTGCaactgaat
aaagaaaaaaaagaaattcatacaATATTTGACAAAGGGTAGGGGAAAGA
ATATGTCAATAATCGAAACAAaactaaatgaaaaaataaaactaaaaaaa
aaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029964XLOC_029964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046965-exon-scaffold_119-1491911889:53625..56429TCONS_00046965-exon-scaffold_119-1491911889:53625..56429Clytia hemisphaericaexon
TCONS_00046965-exon-scaffold_119-1510915933:53625..56429TCONS_00046965-exon-scaffold_119-1510915933:53625..56429Clytia hemisphaericaexon
TCONS_00046965-exon-scaffold_119-1575043694:53625..56429TCONS_00046965-exon-scaffold_119-1575043694:53625..56429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:53625..56429 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.350731	0.280617	0.577379	0.798406	0.083387	0.717887	0.266408	0.427565	0.653121	0.557349	0	0	0	0	0	0	0	0	0	0	0.64993	0.750918	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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